Click here to switch to the map view.

The map label for this gene is cc4 [H]

Identifier: 114331373

GI number: 114331373

Start: 1452644

End: 1453363

Strand: Reverse

Name: cc4 [H]

Synonym: Neut_1382

Alternate gene names: 114331373

Gene position: 1453363-1452644 (Counterclockwise)

Preceding gene: 114331375

Following gene: 114331372

Centisome position: 54.62

GC content: 48.61

Gene sequence:

>720_bases
ATGAAATTTATTGTTTTTATTCTATTATGGGCGATCGTCGGCTCGGCCAATGCACTAGAGCTGGGGGCATCTGAAATTCC
TGATACGCTGGAGCAGCGTGTCAAGCCTTGTATTATTTGCCATGGTGATGAGGACAGAGCAGGGCGGGATGCATATTATC
CGCGTATCGCGGGTAAACCTGCTGGTTATCTATTCAATCAGTTGCGCAATTTCCGTGATGGGCGACGTTATTACCAAGCA
ATGGCGATTTTGCTGGAAAATATGTCTGATGACTATCTGCTTGAAATTGCCCATTATTTCTCCTCCCTGAAATATCCCTA
TCCACAACCGACAGCAAACACACTTTCACCCGATGAAACACAGGCAGTGGAAACGCTGATTCATTCGGGCGACCCTGACC
GGGATATTCCCGCCTGTAGTGCCTGTCACGGTAAGGCATTAACAGGGACGAAACCCTTTATTCCCAGTTTGCTGGGTTTG
CCGCATGCCTATCTGGCTGCTCAATTTGGCGGCTGGCGCAACGGTGGAATCATGCGTGGACAAACACCAGATTGTATGTC
TGAAATAGCCAAAAAAATGACGCAGAAGGAAGTAAATGCGTTGGCCATGTGGCTGCCTACCCAGCCAGTAACGGGTGAGC
CCGCAGAAATGGAAGAGCTGACTCCGGAACTTATGCAGCGTTGTCATACGATTTTATCTGGAGAGGGCTTTATCCAATGA

Upstream 100 bases:

>100_bases
GTTTCTATCCTGCAAAATGGCCTGATTCCAATCTGGACTTTCAGATAAAAATGCAGGAGTATTTCGTTTATTTTGATAAC
TTTTCACCAGTTGAGTGTAA

Downstream 100 bases:

>100_bases
AATTATCAAATAAATTCAAATTTACCGGGAGACGGCAAACTATTATTTTTGCAGCGAGCCTACTGTTGCCATTGTCAGTT
GTTGCTGCAAACCAGTTTCC

Product: putative cytochrome c

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MKFIVFILLWAIVGSANALELGASEIPDTLEQRVKPCIICHGDEDRAGRDAYYPRIAGKPAGYLFNQLRNFRDGRRYYQA
MAILLENMSDDYLLEIAHYFSSLKYPYPQPTANTLSPDETQAVETLIHSGDPDRDIPACSACHGKALTGTKPFIPSLLGL
PHAYLAAQFGGWRNGGIMRGQTPDCMSEIAKKMTQKEVNALAMWLPTQPVTGEPAEMEELTPELMQRCHTILSGEGFIQ

Sequences:

>Translated_239_residues
MKFIVFILLWAIVGSANALELGASEIPDTLEQRVKPCIICHGDEDRAGRDAYYPRIAGKPAGYLFNQLRNFRDGRRYYQA
MAILLENMSDDYLLEIAHYFSSLKYPYPQPTANTLSPDETQAVETLIHSGDPDRDIPACSACHGKALTGTKPFIPSLLGL
PHAYLAAQFGGWRNGGIMRGQTPDCMSEIAKKMTQKEVNALAMWLPTQPVTGEPAEMEELTPELMQRCHTILSGEGFIQ
>Mature_239_residues
MKFIVFILLWAIVGSANALELGASEIPDTLEQRVKPCIICHGDEDRAGRDAYYPRIAGKPAGYLFNQLRNFRDGRRYYQA
MAILLENMSDDYLLEIAHYFSSLKYPYPQPTANTLSPDETQAVETLIHSGDPDRDIPACSACHGKALTGTKPFIPSLLGL
PHAYLAAQFGGWRNGGIMRGQTPDCMSEIAKKMTQKEVNALAMWLPTQPVTGEPAEMEELTPELMQRCHTILSGEGFIQ

Specific function: Diheme, high potential cytochrome c believed to be an intermediate electron donor to terminal oxidation systems [H]

COG id: COG2863

COG function: function code C; Cytochrome c553

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 26552; Mature: 26552

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: PS51007 CYTC L=RR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFIVFILLWAIVGSANALELGASEIPDTLEQRVKPCIICHGDEDRAGRDAYYPRIAGKP
CHHHHHHHHHHHHCCCCHHHCCHHCCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCC
AGYLFNQLRNFRDGRRYYQAMAILLENMSDDYLLEIAHYFSSLKYPYPQPTANTLSPDET
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
QAVETLIHSGDPDRDIPACSACHGKALTGTKPFIPSLLGLPHAYLAAQFGGWRNGGIMRG
HHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCCCCCCC
QTPDCMSEIAKKMTQKEVNALAMWLPTQPVTGEPAEMEELTPELMQRCHTILSGEGFIQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKFIVFILLWAIVGSANALELGASEIPDTLEQRVKPCIICHGDEDRAGRDAYYPRIAGKP
CHHHHHHHHHHHHCCCCHHHCCHHCCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCC
AGYLFNQLRNFRDGRRYYQAMAILLENMSDDYLLEIAHYFSSLKYPYPQPTANTLSPDET
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
QAVETLIHSGDPDRDIPACSACHGKALTGTKPFIPSLLGLPHAYLAAQFGGWRNGGIMRG
HHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCCCCCCC
QTPDCMSEIAKKMTQKEVNALAMWLPTQPVTGEPAEMEELTPELMQRCHTILSGEGFIQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]