Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113477538

Identifier: 113477538

GI number: 113477538

Start: 6352422

End: 6353438

Strand: Reverse

Name: 113477538

Synonym: Tery_4118

Alternate gene names: NA

Gene position: 6353438-6352422 (Counterclockwise)

Preceding gene: 113477539

Following gene: 113477537

Centisome position: 81.98

GC content: 41.1

Gene sequence:

>1017_bases
ATGTACAACTTGCAAAAACTACTAATAAAAGCCCTATCAAATAGCAAGCTACAAAAAGCCAGCAATTTAACAAGTGGTTT
CACAATGACTGAACTGCTAGTAGCAACAGCTGTGGCGAGCATAATTATTGTACCAATATTGACCTTTGCCGTAGATATGC
TCAACCGAGATGTGGGGGAGCAGGCAAAGGCTAACAGTGAGCAGGAGCTACAAACGGCTATTAGCTATATTGCTCAGGAT
ATGAGTCAAGCGTTTTATGTTTATGAGCCTGACTATGTTGGAGAACCAGGCAAAACTCCTCCTATCCCTAGCTATGATGA
TTTTATTAAGCAACTACCGCACTCTGAGGATGAGGACAAAGACCCTATCCTTGTTTTCTGGAAGCGAAAGTTTATAGAAC
ATTCTATACCTATTGACGATAAGGATACGTCTATTAATTGTCCGGCAGATGAAAATAAGTGTGACGACGGCTTTGTCCAG
TCGTTAGTTATTTATTATTTAATAGAAGAGCAGGATAAGAATAGCATCTGGTGTCAGCCATCTGGTAGTAGTTGCCCCAA
GCGCATAGCTAGGTTTGAAATACAGGATGGGGTAAAAGATTATTGGGGTAACTATTTCTGTGGTACTGACGGTCGCTCAG
AAGAATGCTCAGGAAGTAAAAAGAAATTTAAACGAGACTTGGGCTACACTTCCTATGATAACAGTAATCCTACTGGCTGG
ACTAAAAAAGAAGGTGAAGACTACAGTAACAGCCCGGTTGTATTAGTAAATTACATAGAAGACTTTACCCTAGACTCGGC
AAGTGACTATACAAAAGACTCTGAAATAAAGCAAACAGAATTAGCAAAAGGTAAAACGCTAGCTAGAGTCACAATTCTAG
GTAATGCTATGCGCCGCCGTCGAGATGGCTTCAGTTGCATAGAAGACAATTCGACAACTCCTCCAACGTATAAAAAATCT
CCATATTGTCCAAAAGCAACTGCACAAGTGGGACCGCGTAGTGGCTTTGGGGAATAG

Upstream 100 bases:

>100_bases
ATCGCGTGAAAGACAAACACTCAGAAAAACATTGTGGCACAGAATAAAAAGACGACTAACACGGATAATAACTCTTAAAA
AGTTTGGAAATGTATTTACA

Downstream 100 bases:

>100_bases
TACGAGTATAAATACCACAAAAAATCAAAAAGATTTTCAGACTATCTAGATAAAAAACTAATATGAAACCTCTGAATTTA
TTTAAAACGTTACTACGAAA

Product: prepilin-type cleavage/methylation-like protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MYNLQKLLIKALSNSKLQKASNLTSGFTMTELLVATAVASIIIVPILTFAVDMLNRDVGEQAKANSEQELQTAISYIAQD
MSQAFYVYEPDYVGEPGKTPPIPSYDDFIKQLPHSEDEDKDPILVFWKRKFIEHSIPIDDKDTSINCPADENKCDDGFVQ
SLVIYYLIEEQDKNSIWCQPSGSSCPKRIARFEIQDGVKDYWGNYFCGTDGRSEECSGSKKKFKRDLGYTSYDNSNPTGW
TKKEGEDYSNSPVVLVNYIEDFTLDSASDYTKDSEIKQTELAKGKTLARVTILGNAMRRRRDGFSCIEDNSTTPPTYKKS
PYCPKATAQVGPRSGFGE

Sequences:

>Translated_338_residues
MYNLQKLLIKALSNSKLQKASNLTSGFTMTELLVATAVASIIIVPILTFAVDMLNRDVGEQAKANSEQELQTAISYIAQD
MSQAFYVYEPDYVGEPGKTPPIPSYDDFIKQLPHSEDEDKDPILVFWKRKFIEHSIPIDDKDTSINCPADENKCDDGFVQ
SLVIYYLIEEQDKNSIWCQPSGSSCPKRIARFEIQDGVKDYWGNYFCGTDGRSEECSGSKKKFKRDLGYTSYDNSNPTGW
TKKEGEDYSNSPVVLVNYIEDFTLDSASDYTKDSEIKQTELAKGKTLARVTILGNAMRRRRDGFSCIEDNSTTPPTYKKS
PYCPKATAQVGPRSGFGE
>Mature_338_residues
MYNLQKLLIKALSNSKLQKASNLTSGFTMTELLVATAVASIIIVPILTFAVDMLNRDVGEQAKANSEQELQTAISYIAQD
MSQAFYVYEPDYVGEPGKTPPIPSYDDFIKQLPHSEDEDKDPILVFWKRKFIEHSIPIDDKDTSINCPADENKCDDGFVQ
SLVIYYLIEEQDKNSIWCQPSGSSCPKRIARFEIQDGVKDYWGNYFCGTDGRSEECSGSKKKFKRDLGYTSYDNSNPTGW
TKKEGEDYSNSPVVLVNYIEDFTLDSASDYTKDSEIKQTELAKGKTLARVTILGNAMRRRRDGFSCIEDNSTTPPTYKKS
PYCPKATAQVGPRSGFGE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37962; Mature: 37962

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNLQKLLIKALSNSKLQKASNLTSGFTMTELLVATAVASIIIVPILTFAVDMLNRDVGE
CCCHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
QAKANSEQELQTAISYIAQDMSQAFYVYEPDYVGEPGKTPPIPSYDDFIKQLPHSEDEDK
HHHCCCHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
DPILVFWKRKFIEHSIPIDDKDTSINCPADENKCDDGFVQSLVIYYLIEEQDKNSIWCQP
CCEEEEEEHHHHHHCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECC
SGSSCPKRIARFEIQDGVKDYWGNYFCGTDGRSEECSGSKKKFKRDLGYTSYDNSNPTGW
CCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHCCCHHHHHHHHCCCCCCCCCCCCCC
TKKEGEDYSNSPVVLVNYIEDFTLDSASDYTKDSEIKQTELAKGKTLARVTILGNAMRRR
CCCCCCCCCCCCEEEEEEHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEHHHHHHHHHHHH
RDGFSCIEDNSTTPPTYKKSPYCPKATAQVGPRSGFGE
HCCCCEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCC
>Mature Secondary Structure
MYNLQKLLIKALSNSKLQKASNLTSGFTMTELLVATAVASIIIVPILTFAVDMLNRDVGE
CCCHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
QAKANSEQELQTAISYIAQDMSQAFYVYEPDYVGEPGKTPPIPSYDDFIKQLPHSEDEDK
HHHCCCHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
DPILVFWKRKFIEHSIPIDDKDTSINCPADENKCDDGFVQSLVIYYLIEEQDKNSIWCQP
CCEEEEEEHHHHHHCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECC
SGSSCPKRIARFEIQDGVKDYWGNYFCGTDGRSEECSGSKKKFKRDLGYTSYDNSNPTGW
CCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHCCCHHHHHHHHCCCCCCCCCCCCCC
TKKEGEDYSNSPVVLVNYIEDFTLDSASDYTKDSEIKQTELAKGKTLARVTILGNAMRRR
CCCCCCCCCCCCEEEEEEHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEHHHHHHHHHHHH
RDGFSCIEDNSTTPPTYKKSPYCPKATAQVGPRSGFGE
HCCCCEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA