| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113477343
Identifier: 113477343
GI number: 113477343
Start: 6020933
End: 6021556
Strand: Reverse
Name: 113477343
Synonym: Tery_3896
Alternate gene names: NA
Gene position: 6021556-6020933 (Counterclockwise)
Preceding gene: 113477345
Following gene: 113477342
Centisome position: 77.7
GC content: 36.7
Gene sequence:
>624_bases ATGTCTAAAGCTCCCCAGTTTGTCCTAGAAAATATTTTTGCTTTTTCGCCAAATCGGGATACTCTAGGAGGAACTTCTTA TTTTATTGTAGAGAATCAAAACAACATTCTGATTGATTGTCCTGCTAATAATGAAACAAATCAAAAATTTATAATGGCAC AAGGAGGAATAAAGTGGTTGTATATTACCAATCGTAGTGCTATTGGCAAGGCAAAAGCAATTCAAGCAGCTTTCAAATGT GAGATTCTAATTCAAGAACAAGAAGCTTATTTATTGCCTGGACTAAAACCAACGACTTTTGAGTATGAGTTTAATTTAAG TCCACATACTAGTGTTTTCTGGACTCCTGGTCATTCTCCAGGTTCATCTTGTCTATATTATTCGGGGAATGGAGGGGTAT TATTTACAGGTCGGCATTTATTGCCGAATCCTCAGGGGGAACCTGTCCCATTACGTATTCCTAAAACTTTCCATTGGCCT AGACAGGTTCAAAGTGTTAAATTTTTGATTGACCGATTTTCTTGTGAAACTTTAAAGTATATTTGCCCTGGTGCTAATAC TGGTGCCTTGAGAGGTAAGCGAGTAATTGACTCAGCTTATGATAAGTTAGTTTCTAGGAACTAA
Upstream 100 bases:
>100_bases AACAAAATTAAAATTAATAAAAAAAGCATAATATATTTGTTTTGCTGATATTGTCTATTTCTAATTAAGTAATCATACTG TCTTGATACAACAGCCCTTT
Downstream 100 bases:
>100_bases AAATTATAATACTCTATGGCAACTATCACCGCTTATCCCAATGCCCCAGATTTATCTGCTAGTGATTATTTAGTTATTGG TCTAGCAACCTGCTTTGTCA
Product: beta-lactamase-like protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 207; Mature: 206
Protein sequence:
>207_residues MSKAPQFVLENIFAFSPNRDTLGGTSYFIVENQNNILIDCPANNETNQKFIMAQGGIKWLYITNRSAIGKAKAIQAAFKC EILIQEQEAYLLPGLKPTTFEYEFNLSPHTSVFWTPGHSPGSSCLYYSGNGGVLFTGRHLLPNPQGEPVPLRIPKTFHWP RQVQSVKFLIDRFSCETLKYICPGANTGALRGKRVIDSAYDKLVSRN
Sequences:
>Translated_207_residues MSKAPQFVLENIFAFSPNRDTLGGTSYFIVENQNNILIDCPANNETNQKFIMAQGGIKWLYITNRSAIGKAKAIQAAFKC EILIQEQEAYLLPGLKPTTFEYEFNLSPHTSVFWTPGHSPGSSCLYYSGNGGVLFTGRHLLPNPQGEPVPLRIPKTFHWP RQVQSVKFLIDRFSCETLKYICPGANTGALRGKRVIDSAYDKLVSRN >Mature_206_residues SKAPQFVLENIFAFSPNRDTLGGTSYFIVENQNNILIDCPANNETNQKFIMAQGGIKWLYITNRSAIGKAKAIQAAFKCE ILIQEQEAYLLPGLKPTTFEYEFNLSPHTSVFWTPGHSPGSSCLYYSGNGGVLFTGRHLLPNPQGEPVPLRIPKTFHWPR QVQSVKFLIDRFSCETLKYICPGANTGALRGKRVIDSAYDKLVSRN
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23164; Mature: 23033
Theoretical pI: Translated: 9.17; Mature: 9.17
Prosite motif: PS00063 ALDOKETO_REDUCTASE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKAPQFVLENIFAFSPNRDTLGGTSYFIVENQNNILIDCPANNETNQKFIMAQGGIKWL CCCCHHHHHHHHEEECCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCEEEEEECCEEEE YITNRSAIGKAKAIQAAFKCEILIQEQEAYLLPGLKPTTFEYEFNLSPHTSVFWTPGHSP EEECCCCCCHHHHHHHEEEEEEEEEECCEEECCCCCCCEEEEEEECCCCCEEEECCCCCC GSSCLYYSGNGGVLFTGRHLLPNPQGEPVPLRIPKTFHWPRQVQSVKFLIDRFSCETLKY CCCEEEEECCCCEEEECCEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE ICPGANTGALRGKRVIDSAYDKLVSRN ECCCCCCCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure SKAPQFVLENIFAFSPNRDTLGGTSYFIVENQNNILIDCPANNETNQKFIMAQGGIKWL CCCHHHHHHHHEEECCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCEEEEEECCEEEE YITNRSAIGKAKAIQAAFKCEILIQEQEAYLLPGLKPTTFEYEFNLSPHTSVFWTPGHSP EEECCCCCCHHHHHHHEEEEEEEEEECCEEECCCCCCCEEEEEEECCCCCEEEECCCCCC GSSCLYYSGNGGVLFTGRHLLPNPQGEPVPLRIPKTFHWPRQVQSVKFLIDRFSCETLKY CCCEEEEECCCCEEEECCEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE ICPGANTGALRGKRVIDSAYDKLVSRN ECCCCCCCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA