| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477171
Identifier: 113477171
GI number: 113477171
Start: 5685988
End: 5686614
Strand: Reverse
Name: 113477171
Synonym: Tery_3700
Alternate gene names: NA
Gene position: 5686614-5685988 (Counterclockwise)
Preceding gene: 113477175
Following gene: 113477169
Centisome position: 73.37
GC content: 42.26
Gene sequence:
>627_bases ATGAGTACTATTTCACCTAAGAACCAGACAATACAGCCGAGAGGATGGTATTCCTTAACTCCCTTATGGCAAGGAGGAGA AGAAGTTGTTCGCCAAGGTTTACCTCATTCGCTACTTTCACCCCCATGGCAAATATTACTTCTGGGAGATGGCTCCCCAA CTCGTCACTTGCAGCTATTAACAACTGAACCAACAGAAGTTGATGTAATTGATATGTCCTCAATTGGGATGAACCTGGAT AATGCTCCTGATTTAATTCATACTGTACCTGGCCCAAGATTACGGCGACAAGTATGGCTAAGAACAGCTTCTGGACAAAG ATTGGCTTATGCTTCATCTTGGTGGGAAGCGAGTCATGTAGATGAGTATTTGCAAAATCGGTCTTTACCAATTTGGGCAA GTTTAGCTCGTTTGCGTACAGAATTGTATCGAGATGTCCAGGGAATTTATTATGGGCATTCTAGAGAATTAGAGTTTGCT TTTGGTGAGTCAGGGCCTTTTTGGGGACGACATTATCTATTTTGGCATCATGGCCAACCACTGACATTAATTTATGAGGT GTTTTCGCCTTATCTCAACAAATATTTGGGACAAACAAGCATTACGGACAGGGATTTTCCGGAGTAA
Upstream 100 bases:
>100_bases GAGATAAAAAGAATAAACTTTAGTATTTCATTTATAGACTTTAGCCAGAGGCACTAATAACTGATAACTGATAACTGATA ACTAATAACTAATAATTCAA
Downstream 100 bases:
>100_bases TAGTTGTTAGTTTTTTCATAAGTATAAATGTTAAGACTTTATTAAAAAATTAGAATTATCAAAGATTGTATGAAGTATTT TATTTTTAATGTAAGTAAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 208; Mature: 207
Protein sequence:
>208_residues MSTISPKNQTIQPRGWYSLTPLWQGGEEVVRQGLPHSLLSPPWQILLLGDGSPTRHLQLLTTEPTEVDVIDMSSIGMNLD NAPDLIHTVPGPRLRRQVWLRTASGQRLAYASSWWEASHVDEYLQNRSLPIWASLARLRTELYRDVQGIYYGHSRELEFA FGESGPFWGRHYLFWHHGQPLTLIYEVFSPYLNKYLGQTSITDRDFPE
Sequences:
>Translated_208_residues MSTISPKNQTIQPRGWYSLTPLWQGGEEVVRQGLPHSLLSPPWQILLLGDGSPTRHLQLLTTEPTEVDVIDMSSIGMNLD NAPDLIHTVPGPRLRRQVWLRTASGQRLAYASSWWEASHVDEYLQNRSLPIWASLARLRTELYRDVQGIYYGHSRELEFA FGESGPFWGRHYLFWHHGQPLTLIYEVFSPYLNKYLGQTSITDRDFPE >Mature_207_residues STISPKNQTIQPRGWYSLTPLWQGGEEVVRQGLPHSLLSPPWQILLLGDGSPTRHLQLLTTEPTEVDVIDMSSIGMNLDN APDLIHTVPGPRLRRQVWLRTASGQRLAYASSWWEASHVDEYLQNRSLPIWASLARLRTELYRDVQGIYYGHSRELEFAF GESGPFWGRHYLFWHHGQPLTLIYEVFSPYLNKYLGQTSITDRDFPE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23988; Mature: 23857
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTISPKNQTIQPRGWYSLTPLWQGGEEVVRQGLPHSLLSPPWQILLLGDGSPTRHLQLL CCCCCCCCCEECCCCCEEECCCCCCCHHHHHCCCCHHHHCCCEEEEEEECCCCCCEEEEE TTEPTEVDVIDMSSIGMNLDNAPDLIHTVPGPRLRRQVWLRTASGQRLAYASSWWEASHV ECCCCEEEEEEHHHCCCCCCCCCCCEECCCCHHHHHHHHEECCCCCEEEEHHCCCCHHHH DEYLQNRSLPIWASLARLRTELYRDVQGIYYGHSRELEFAFGESGPFWGRHYLFWHHGQP HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEEECCCC LTLIYEVFSPYLNKYLGQTSITDRDFPE HHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure STISPKNQTIQPRGWYSLTPLWQGGEEVVRQGLPHSLLSPPWQILLLGDGSPTRHLQLL CCCCCCCCEECCCCCEEECCCCCCCHHHHHCCCCHHHHCCCEEEEEEECCCCCCEEEEE TTEPTEVDVIDMSSIGMNLDNAPDLIHTVPGPRLRRQVWLRTASGQRLAYASSWWEASHV ECCCCEEEEEEHHHCCCCCCCCCCCEECCCCHHHHHHHHEECCCCCEEEEHHCCCCHHHH DEYLQNRSLPIWASLARLRTELYRDVQGIYYGHSRELEFAFGESGPFWGRHYLFWHHGQP HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEEECCCC LTLIYEVFSPYLNKYLGQTSITDRDFPE HHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA