Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113477145

Identifier: 113477145

GI number: 113477145

Start: 5633961

End: 5635901

Strand: Reverse

Name: 113477145

Synonym: Tery_3672

Alternate gene names: NA

Gene position: 5635901-5633961 (Counterclockwise)

Preceding gene: 113477146

Following gene: 113477141

Centisome position: 72.72

GC content: 35.39

Gene sequence:

>1941_bases
ATGTGTTATAATATACTAGTAAAAGTTTTCTTTGATCTATTTGATTTCATGACCACACCACCTAAACATACCTTATTAGC
TGTGCTCAAAATAGCACTCTTATCTACTTCATATACATTATCTTTCATGGCAACAAGTTTTTCTTCAGTATATCCAGGCA
ATAAGCAAATTAATAGCCTAGTATTTGCTCAAGAAAATGTTAAGACCAACCCTAACCTTACTGCTAACCTTGAGGAAAAC
AATACAACTCAACCCACCGAACAAAAAACACAGGAAGATTCAGAAACTAGTGTAAACTCTAGATTCAAAATTATTAGAGA
GGATCTCCAACAGGAAAGTTTAGAAATAATAAATTTTGCTGTCAAACAGATTAAGTTACTAATTTTAATCCTTTTACTGA
TCATAATATATTTGCCAGTTTTCTGGTTGCGCCCCACAATGTTATTATTACTACCTAACCATTTGAAGATACCGAAAACA
CCATTAAATCCAGAAATTAAACTACTTGGTGGTCTCTTATCCTTTCTCAAGTATAACTCTAGGGTACTAGATGCTTGGGT
TAATAAACATCTGGCAACTTGGCAAAAAAAGTTTCTAGAAAAATCTATTGTTAATGAGCAAAAAAATTATGTTCCTCTTC
CTGTTCAATTAAATGGTACAGAAATTGAAGAACTCACATGGGAAACCTTGATTAATTCTTATCACCAAGAAAAGCGAATG
CGACTGTTAATTTGGGGCGAGGGAGGCTCAGGAAAAACAACTATTGCTTGTCAAATTGCTAAATGGGCAATGAAAAAGCC
GGAAAAAGATCAAGCCGTACATAAACATTTGATGTTACCAGTTTTAATTAACCGGGAAATTGATCAGACTGAAGATGATG
ATACCATACCGATAATAGAAACAATTTTGAGCGAAATTCAGGAGTTGAGCGACAAGGAAAAAATAGCAGATCAATTCTTA
ATTGAACAACTCTTGCGAAAGCGCCGAATTTTCTTGATAGTAGATCGTTATTCAGAGATGAGCCCAGAAACTCAAGAAAA
AATTAATCCTGATGACAAAGAATTTCCGGCAAATGCTTTGGTTTTTGTTTCTAGAATAGAGGAAAAGTTCTTGGGTATTG
ATGCCAAAATTAAGACGAACCGGTTTGATGGTGAAAAGTTGGTTCACTTTCTCAAGGAGTATTTGAAGAAGTGCGGTAAA
TGGCATTTGTTTGAAGCAGATCAAGAAGAATTTTTGCAAGAATGCGCTCAACTTGCAGGCACTTTTAAGAACCAAAAGAC
TATTACTCCTTTGTTAGCAAAGTTTTATGCTGAAAAAATGGTTAATAGTAAGGAGAATAATTTTACCTTGAAGCCTTCAC
TCGACAATATTCCCGATCTCATGCTTAAGCACTTACAAAAGTTAAACGCTAAAGGTGAAATAGAGACTAGGAGTGAATAT
CCTAAAGTTACAGAGGATGCTCAACTCATTGCTTGGAAATGTGTGGAGCAAAATTATAGACCATCCTATATAGAACGGGA
AAAAGTAGTTAAAGCTTTTGAGCAGTTAGGGAGAGATGATGCAGTACTATGTCTTGAGTACTTTCAGAAACAATTGCAAC
TGCTTAGGCCTATTGGATATGGTGAAATTCAAGACAGAAACCAAATTCGCTTTACCCTCGAACCCTTAGCAGAATATCTG
GCTGCACTATATTTGCTCAAGGAGAATAAGGATGATCACGAAAAGTGGCAGGAATTCCTGGTAACAGCCGAAGAAAAGTT
GGGTCACGAAAAAATTCAAGGCTTTTTGTTGGCAGTTAGAGACTGTTGCTTAGCAAAAGGATCAGAAGTTAATGTGCCTA
GTTTTGTAGTAGATGAAATTGGGAAACTAACAAAAGATGAACATTTAAGGATGAGTTATGCTACTGTAAATTCACAAAAT
CAACTAGTGAAAATTCGGTAG

Upstream 100 bases:

>100_bases
TTCTTCTAAAACTAGACATTGAGAAAGAACAAAACAGAGCAAGCTGCCTTAAATTTCCGTGGTAACGGGATCTCTTTGTA
CGTATTCACTTACAGCTAAT

Downstream 100 bases:

>100_bases
AATAGCGCTATAAAATTTATTCATTGAAACTTGAAAAGATGATTTTTAGAGGAATAAAACACAAGAGTTTGCCTACAGAT
ATACTGATTAATATGGATAA

Product: hypothetical protein

Products: NA

Alternate protein names: PBS Lyase HEAT Domain Protein Repeat-Containing Protein

Number of amino acids: Translated: 646; Mature: 646

Protein sequence:

>646_residues
MCYNILVKVFFDLFDFMTTPPKHTLLAVLKIALLSTSYTLSFMATSFSSVYPGNKQINSLVFAQENVKTNPNLTANLEEN
NTTQPTEQKTQEDSETSVNSRFKIIREDLQQESLEIINFAVKQIKLLILILLLIIIYLPVFWLRPTMLLLLPNHLKIPKT
PLNPEIKLLGGLLSFLKYNSRVLDAWVNKHLATWQKKFLEKSIVNEQKNYVPLPVQLNGTEIEELTWETLINSYHQEKRM
RLLIWGEGGSGKTTIACQIAKWAMKKPEKDQAVHKHLMLPVLINREIDQTEDDDTIPIIETILSEIQELSDKEKIADQFL
IEQLLRKRRIFLIVDRYSEMSPETQEKINPDDKEFPANALVFVSRIEEKFLGIDAKIKTNRFDGEKLVHFLKEYLKKCGK
WHLFEADQEEFLQECAQLAGTFKNQKTITPLLAKFYAEKMVNSKENNFTLKPSLDNIPDLMLKHLQKLNAKGEIETRSEY
PKVTEDAQLIAWKCVEQNYRPSYIEREKVVKAFEQLGRDDAVLCLEYFQKQLQLLRPIGYGEIQDRNQIRFTLEPLAEYL
AALYLLKENKDDHEKWQEFLVTAEEKLGHEKIQGFLLAVRDCCLAKGSEVNVPSFVVDEIGKLTKDEHLRMSYATVNSQN
QLVKIR

Sequences:

>Translated_646_residues
MCYNILVKVFFDLFDFMTTPPKHTLLAVLKIALLSTSYTLSFMATSFSSVYPGNKQINSLVFAQENVKTNPNLTANLEEN
NTTQPTEQKTQEDSETSVNSRFKIIREDLQQESLEIINFAVKQIKLLILILLLIIIYLPVFWLRPTMLLLLPNHLKIPKT
PLNPEIKLLGGLLSFLKYNSRVLDAWVNKHLATWQKKFLEKSIVNEQKNYVPLPVQLNGTEIEELTWETLINSYHQEKRM
RLLIWGEGGSGKTTIACQIAKWAMKKPEKDQAVHKHLMLPVLINREIDQTEDDDTIPIIETILSEIQELSDKEKIADQFL
IEQLLRKRRIFLIVDRYSEMSPETQEKINPDDKEFPANALVFVSRIEEKFLGIDAKIKTNRFDGEKLVHFLKEYLKKCGK
WHLFEADQEEFLQECAQLAGTFKNQKTITPLLAKFYAEKMVNSKENNFTLKPSLDNIPDLMLKHLQKLNAKGEIETRSEY
PKVTEDAQLIAWKCVEQNYRPSYIEREKVVKAFEQLGRDDAVLCLEYFQKQLQLLRPIGYGEIQDRNQIRFTLEPLAEYL
AALYLLKENKDDHEKWQEFLVTAEEKLGHEKIQGFLLAVRDCCLAKGSEVNVPSFVVDEIGKLTKDEHLRMSYATVNSQN
QLVKIR
>Mature_646_residues
MCYNILVKVFFDLFDFMTTPPKHTLLAVLKIALLSTSYTLSFMATSFSSVYPGNKQINSLVFAQENVKTNPNLTANLEEN
NTTQPTEQKTQEDSETSVNSRFKIIREDLQQESLEIINFAVKQIKLLILILLLIIIYLPVFWLRPTMLLLLPNHLKIPKT
PLNPEIKLLGGLLSFLKYNSRVLDAWVNKHLATWQKKFLEKSIVNEQKNYVPLPVQLNGTEIEELTWETLINSYHQEKRM
RLLIWGEGGSGKTTIACQIAKWAMKKPEKDQAVHKHLMLPVLINREIDQTEDDDTIPIIETILSEIQELSDKEKIADQFL
IEQLLRKRRIFLIVDRYSEMSPETQEKINPDDKEFPANALVFVSRIEEKFLGIDAKIKTNRFDGEKLVHFLKEYLKKCGK
WHLFEADQEEFLQECAQLAGTFKNQKTITPLLAKFYAEKMVNSKENNFTLKPSLDNIPDLMLKHLQKLNAKGEIETRSEY
PKVTEDAQLIAWKCVEQNYRPSYIEREKVVKAFEQLGRDDAVLCLEYFQKQLQLLRPIGYGEIQDRNQIRFTLEPLAEYL
AALYLLKENKDDHEKWQEFLVTAEEKLGHEKIQGFLLAVRDCCLAKGSEVNVPSFVVDEIGKLTKDEHLRMSYATVNSQN
QLVKIR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 75000; Mature: 75000

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCYNILVKVFFDLFDFMTTPPKHTLLAVLKIALLSTSYTLSFMATSFSSVYPGNKQINSL
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
VFAQENVKTNPNLTANLEENNTTQPTEQKTQEDSETSVNSRFKIIREDLQQESLEIINFA
HEECCCCCCCCCEEEEECCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKQIKLLILILLLIIIYLPVFWLRPTMLLLLPNHLKIPKTPLNPEIKLLGGLLSFLKYNS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCH
RVLDAWVNKHLATWQKKFLEKSIVNEQKNYVPLPVQLNGTEIEELTWETLINSYHQEKRM
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCE
RLLIWGEGGSGKTTIACQIAKWAMKKPEKDQAVHKHLMLPVLINREIDQTEDDDTIPIIE
EEEEEECCCCCCEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
TILSEIQELSDKEKIADQFLIEQLLRKRRIFLIVDRYSEMSPETQEKINPDDKEFPANAL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCCCCCCCHHH
VFVSRIEEKFLGIDAKIKTNRFDGEKLVHFLKEYLKKCGKWHLFEADQEEFLQECAQLAG
HHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHH
TFKNQKTITPLLAKFYAEKMVNSKENNFTLKPSLDNIPDLMLKHLQKLNAKGEIETRSEY
HHCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
PKVTEDAQLIAWKCVEQNYRPSYIEREKVVKAFEQLGRDDAVLCLEYFQKQLQLLRPIGY
CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
GEIQDRNQIRFTLEPLAEYLAALYLLKENKDDHEKWQEFLVTAEEKLGHEKIQGFLLAVR
CCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
DCCLAKGSEVNVPSFVVDEIGKLTKDEHLRMSYATVNSQNQLVKIR
HHHHCCCCCCCCCHHHHHHHHHHCCCHHHEEEEEEECCCCCEEEEC
>Mature Secondary Structure
MCYNILVKVFFDLFDFMTTPPKHTLLAVLKIALLSTSYTLSFMATSFSSVYPGNKQINSL
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
VFAQENVKTNPNLTANLEENNTTQPTEQKTQEDSETSVNSRFKIIREDLQQESLEIINFA
HEECCCCCCCCCEEEEECCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKQIKLLILILLLIIIYLPVFWLRPTMLLLLPNHLKIPKTPLNPEIKLLGGLLSFLKYNS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCH
RVLDAWVNKHLATWQKKFLEKSIVNEQKNYVPLPVQLNGTEIEELTWETLINSYHQEKRM
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCE
RLLIWGEGGSGKTTIACQIAKWAMKKPEKDQAVHKHLMLPVLINREIDQTEDDDTIPIIE
EEEEEECCCCCCEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
TILSEIQELSDKEKIADQFLIEQLLRKRRIFLIVDRYSEMSPETQEKINPDDKEFPANAL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCCCCCCCHHH
VFVSRIEEKFLGIDAKIKTNRFDGEKLVHFLKEYLKKCGKWHLFEADQEEFLQECAQLAG
HHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHH
TFKNQKTITPLLAKFYAEKMVNSKENNFTLKPSLDNIPDLMLKHLQKLNAKGEIETRSEY
HHCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
PKVTEDAQLIAWKCVEQNYRPSYIEREKVVKAFEQLGRDDAVLCLEYFQKQLQLLRPIGY
CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
GEIQDRNQIRFTLEPLAEYLAALYLLKENKDDHEKWQEFLVTAEEKLGHEKIQGFLLAVR
CCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
DCCLAKGSEVNVPSFVVDEIGKLTKDEHLRMSYATVNSQNQLVKIR
HHHHCCCCCCCCCHHHHHHHHHHCCCHHHEEEEEEECCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA