| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477145
Identifier: 113477145
GI number: 113477145
Start: 5633961
End: 5635901
Strand: Reverse
Name: 113477145
Synonym: Tery_3672
Alternate gene names: NA
Gene position: 5635901-5633961 (Counterclockwise)
Preceding gene: 113477146
Following gene: 113477141
Centisome position: 72.72
GC content: 35.39
Gene sequence:
>1941_bases ATGTGTTATAATATACTAGTAAAAGTTTTCTTTGATCTATTTGATTTCATGACCACACCACCTAAACATACCTTATTAGC TGTGCTCAAAATAGCACTCTTATCTACTTCATATACATTATCTTTCATGGCAACAAGTTTTTCTTCAGTATATCCAGGCA ATAAGCAAATTAATAGCCTAGTATTTGCTCAAGAAAATGTTAAGACCAACCCTAACCTTACTGCTAACCTTGAGGAAAAC AATACAACTCAACCCACCGAACAAAAAACACAGGAAGATTCAGAAACTAGTGTAAACTCTAGATTCAAAATTATTAGAGA GGATCTCCAACAGGAAAGTTTAGAAATAATAAATTTTGCTGTCAAACAGATTAAGTTACTAATTTTAATCCTTTTACTGA TCATAATATATTTGCCAGTTTTCTGGTTGCGCCCCACAATGTTATTATTACTACCTAACCATTTGAAGATACCGAAAACA CCATTAAATCCAGAAATTAAACTACTTGGTGGTCTCTTATCCTTTCTCAAGTATAACTCTAGGGTACTAGATGCTTGGGT TAATAAACATCTGGCAACTTGGCAAAAAAAGTTTCTAGAAAAATCTATTGTTAATGAGCAAAAAAATTATGTTCCTCTTC CTGTTCAATTAAATGGTACAGAAATTGAAGAACTCACATGGGAAACCTTGATTAATTCTTATCACCAAGAAAAGCGAATG CGACTGTTAATTTGGGGCGAGGGAGGCTCAGGAAAAACAACTATTGCTTGTCAAATTGCTAAATGGGCAATGAAAAAGCC GGAAAAAGATCAAGCCGTACATAAACATTTGATGTTACCAGTTTTAATTAACCGGGAAATTGATCAGACTGAAGATGATG ATACCATACCGATAATAGAAACAATTTTGAGCGAAATTCAGGAGTTGAGCGACAAGGAAAAAATAGCAGATCAATTCTTA ATTGAACAACTCTTGCGAAAGCGCCGAATTTTCTTGATAGTAGATCGTTATTCAGAGATGAGCCCAGAAACTCAAGAAAA AATTAATCCTGATGACAAAGAATTTCCGGCAAATGCTTTGGTTTTTGTTTCTAGAATAGAGGAAAAGTTCTTGGGTATTG ATGCCAAAATTAAGACGAACCGGTTTGATGGTGAAAAGTTGGTTCACTTTCTCAAGGAGTATTTGAAGAAGTGCGGTAAA TGGCATTTGTTTGAAGCAGATCAAGAAGAATTTTTGCAAGAATGCGCTCAACTTGCAGGCACTTTTAAGAACCAAAAGAC TATTACTCCTTTGTTAGCAAAGTTTTATGCTGAAAAAATGGTTAATAGTAAGGAGAATAATTTTACCTTGAAGCCTTCAC TCGACAATATTCCCGATCTCATGCTTAAGCACTTACAAAAGTTAAACGCTAAAGGTGAAATAGAGACTAGGAGTGAATAT CCTAAAGTTACAGAGGATGCTCAACTCATTGCTTGGAAATGTGTGGAGCAAAATTATAGACCATCCTATATAGAACGGGA AAAAGTAGTTAAAGCTTTTGAGCAGTTAGGGAGAGATGATGCAGTACTATGTCTTGAGTACTTTCAGAAACAATTGCAAC TGCTTAGGCCTATTGGATATGGTGAAATTCAAGACAGAAACCAAATTCGCTTTACCCTCGAACCCTTAGCAGAATATCTG GCTGCACTATATTTGCTCAAGGAGAATAAGGATGATCACGAAAAGTGGCAGGAATTCCTGGTAACAGCCGAAGAAAAGTT GGGTCACGAAAAAATTCAAGGCTTTTTGTTGGCAGTTAGAGACTGTTGCTTAGCAAAAGGATCAGAAGTTAATGTGCCTA GTTTTGTAGTAGATGAAATTGGGAAACTAACAAAAGATGAACATTTAAGGATGAGTTATGCTACTGTAAATTCACAAAAT CAACTAGTGAAAATTCGGTAG
Upstream 100 bases:
>100_bases TTCTTCTAAAACTAGACATTGAGAAAGAACAAAACAGAGCAAGCTGCCTTAAATTTCCGTGGTAACGGGATCTCTTTGTA CGTATTCACTTACAGCTAAT
Downstream 100 bases:
>100_bases AATAGCGCTATAAAATTTATTCATTGAAACTTGAAAAGATGATTTTTAGAGGAATAAAACACAAGAGTTTGCCTACAGAT ATACTGATTAATATGGATAA
Product: hypothetical protein
Products: NA
Alternate protein names: PBS Lyase HEAT Domain Protein Repeat-Containing Protein
Number of amino acids: Translated: 646; Mature: 646
Protein sequence:
>646_residues MCYNILVKVFFDLFDFMTTPPKHTLLAVLKIALLSTSYTLSFMATSFSSVYPGNKQINSLVFAQENVKTNPNLTANLEEN NTTQPTEQKTQEDSETSVNSRFKIIREDLQQESLEIINFAVKQIKLLILILLLIIIYLPVFWLRPTMLLLLPNHLKIPKT PLNPEIKLLGGLLSFLKYNSRVLDAWVNKHLATWQKKFLEKSIVNEQKNYVPLPVQLNGTEIEELTWETLINSYHQEKRM RLLIWGEGGSGKTTIACQIAKWAMKKPEKDQAVHKHLMLPVLINREIDQTEDDDTIPIIETILSEIQELSDKEKIADQFL IEQLLRKRRIFLIVDRYSEMSPETQEKINPDDKEFPANALVFVSRIEEKFLGIDAKIKTNRFDGEKLVHFLKEYLKKCGK WHLFEADQEEFLQECAQLAGTFKNQKTITPLLAKFYAEKMVNSKENNFTLKPSLDNIPDLMLKHLQKLNAKGEIETRSEY PKVTEDAQLIAWKCVEQNYRPSYIEREKVVKAFEQLGRDDAVLCLEYFQKQLQLLRPIGYGEIQDRNQIRFTLEPLAEYL AALYLLKENKDDHEKWQEFLVTAEEKLGHEKIQGFLLAVRDCCLAKGSEVNVPSFVVDEIGKLTKDEHLRMSYATVNSQN QLVKIR
Sequences:
>Translated_646_residues MCYNILVKVFFDLFDFMTTPPKHTLLAVLKIALLSTSYTLSFMATSFSSVYPGNKQINSLVFAQENVKTNPNLTANLEEN NTTQPTEQKTQEDSETSVNSRFKIIREDLQQESLEIINFAVKQIKLLILILLLIIIYLPVFWLRPTMLLLLPNHLKIPKT PLNPEIKLLGGLLSFLKYNSRVLDAWVNKHLATWQKKFLEKSIVNEQKNYVPLPVQLNGTEIEELTWETLINSYHQEKRM RLLIWGEGGSGKTTIACQIAKWAMKKPEKDQAVHKHLMLPVLINREIDQTEDDDTIPIIETILSEIQELSDKEKIADQFL IEQLLRKRRIFLIVDRYSEMSPETQEKINPDDKEFPANALVFVSRIEEKFLGIDAKIKTNRFDGEKLVHFLKEYLKKCGK WHLFEADQEEFLQECAQLAGTFKNQKTITPLLAKFYAEKMVNSKENNFTLKPSLDNIPDLMLKHLQKLNAKGEIETRSEY PKVTEDAQLIAWKCVEQNYRPSYIEREKVVKAFEQLGRDDAVLCLEYFQKQLQLLRPIGYGEIQDRNQIRFTLEPLAEYL AALYLLKENKDDHEKWQEFLVTAEEKLGHEKIQGFLLAVRDCCLAKGSEVNVPSFVVDEIGKLTKDEHLRMSYATVNSQN QLVKIR >Mature_646_residues MCYNILVKVFFDLFDFMTTPPKHTLLAVLKIALLSTSYTLSFMATSFSSVYPGNKQINSLVFAQENVKTNPNLTANLEEN NTTQPTEQKTQEDSETSVNSRFKIIREDLQQESLEIINFAVKQIKLLILILLLIIIYLPVFWLRPTMLLLLPNHLKIPKT PLNPEIKLLGGLLSFLKYNSRVLDAWVNKHLATWQKKFLEKSIVNEQKNYVPLPVQLNGTEIEELTWETLINSYHQEKRM RLLIWGEGGSGKTTIACQIAKWAMKKPEKDQAVHKHLMLPVLINREIDQTEDDDTIPIIETILSEIQELSDKEKIADQFL IEQLLRKRRIFLIVDRYSEMSPETQEKINPDDKEFPANALVFVSRIEEKFLGIDAKIKTNRFDGEKLVHFLKEYLKKCGK WHLFEADQEEFLQECAQLAGTFKNQKTITPLLAKFYAEKMVNSKENNFTLKPSLDNIPDLMLKHLQKLNAKGEIETRSEY PKVTEDAQLIAWKCVEQNYRPSYIEREKVVKAFEQLGRDDAVLCLEYFQKQLQLLRPIGYGEIQDRNQIRFTLEPLAEYL AALYLLKENKDDHEKWQEFLVTAEEKLGHEKIQGFLLAVRDCCLAKGSEVNVPSFVVDEIGKLTKDEHLRMSYATVNSQN QLVKIR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 75000; Mature: 75000
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCYNILVKVFFDLFDFMTTPPKHTLLAVLKIALLSTSYTLSFMATSFSSVYPGNKQINSL CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH VFAQENVKTNPNLTANLEENNTTQPTEQKTQEDSETSVNSRFKIIREDLQQESLEIINFA HEECCCCCCCCCEEEEECCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VKQIKLLILILLLIIIYLPVFWLRPTMLLLLPNHLKIPKTPLNPEIKLLGGLLSFLKYNS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCH RVLDAWVNKHLATWQKKFLEKSIVNEQKNYVPLPVQLNGTEIEELTWETLINSYHQEKRM HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCE RLLIWGEGGSGKTTIACQIAKWAMKKPEKDQAVHKHLMLPVLINREIDQTEDDDTIPIIE EEEEEECCCCCCEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH TILSEIQELSDKEKIADQFLIEQLLRKRRIFLIVDRYSEMSPETQEKINPDDKEFPANAL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCCCCCCCHHH VFVSRIEEKFLGIDAKIKTNRFDGEKLVHFLKEYLKKCGKWHLFEADQEEFLQECAQLAG HHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHH TFKNQKTITPLLAKFYAEKMVNSKENNFTLKPSLDNIPDLMLKHLQKLNAKGEIETRSEY HHCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCC PKVTEDAQLIAWKCVEQNYRPSYIEREKVVKAFEQLGRDDAVLCLEYFQKQLQLLRPIGY CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC GEIQDRNQIRFTLEPLAEYLAALYLLKENKDDHEKWQEFLVTAEEKLGHEKIQGFLLAVR CCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHH DCCLAKGSEVNVPSFVVDEIGKLTKDEHLRMSYATVNSQNQLVKIR HHHHCCCCCCCCCHHHHHHHHHHCCCHHHEEEEEEECCCCCEEEEC >Mature Secondary Structure MCYNILVKVFFDLFDFMTTPPKHTLLAVLKIALLSTSYTLSFMATSFSSVYPGNKQINSL CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH VFAQENVKTNPNLTANLEENNTTQPTEQKTQEDSETSVNSRFKIIREDLQQESLEIINFA HEECCCCCCCCCEEEEECCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VKQIKLLILILLLIIIYLPVFWLRPTMLLLLPNHLKIPKTPLNPEIKLLGGLLSFLKYNS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCH RVLDAWVNKHLATWQKKFLEKSIVNEQKNYVPLPVQLNGTEIEELTWETLINSYHQEKRM HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCE RLLIWGEGGSGKTTIACQIAKWAMKKPEKDQAVHKHLMLPVLINREIDQTEDDDTIPIIE EEEEEECCCCCCEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH TILSEIQELSDKEKIADQFLIEQLLRKRRIFLIVDRYSEMSPETQEKINPDDKEFPANAL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCCCCCCCHHH VFVSRIEEKFLGIDAKIKTNRFDGEKLVHFLKEYLKKCGKWHLFEADQEEFLQECAQLAG HHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHH TFKNQKTITPLLAKFYAEKMVNSKENNFTLKPSLDNIPDLMLKHLQKLNAKGEIETRSEY HHCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCC PKVTEDAQLIAWKCVEQNYRPSYIEREKVVKAFEQLGRDDAVLCLEYFQKQLQLLRPIGY CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC GEIQDRNQIRFTLEPLAEYLAALYLLKENKDDHEKWQEFLVTAEEKLGHEKIQGFLLAVR CCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHH DCCLAKGSEVNVPSFVVDEIGKLTKDEHLRMSYATVNSQNQLVKIR HHHHCCCCCCCCCHHHHHHHHHHCCCHHHEEEEEEECCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA