Click here to switch to the map view.

The map label for this gene is apcA [H]

Identifier: 113477126

GI number: 113477126

Start: 5609420

End: 5609905

Strand: Reverse

Name: apcA [H]

Synonym: Tery_3650

Alternate gene names: 113477126

Gene position: 5609905-5609420 (Counterclockwise)

Preceding gene: 113477129

Following gene: 113477125

Centisome position: 72.38

GC content: 40.12

Gene sequence:

>486_bases
ATGAGTATTGTTACTAAATCAATTGTTAATGCAGATGCCGAGGCTCGTTATTTGAGTCCCGGTGAATTAGAGAGAATCAA
AGACTTTGTCAAGGCTGGAGAAACCCGTGTTAGGATTGCTCAAGTTATGACTGAATCTCGTGAGAAAATTATTAAGGAAG
CTGGTCAACAACTATTCCAAAAGCGTCCGGATGTTGTCTCTCCTGGTGGTAATGCCTACGGTGAAGAGATGACTGCTACT
TGTTTACGGGATCTTGATTATTATTTGCGTTTAATTTCTTACGGTATTGTCTCTGGTGATGTTACTCCTATTGAAGAGAT
CGGACTTGTAGGCGTTCGTGAAATGTATAAGTCTTTAGGAACTCCTATTGAAGCTGTTGCTGAAGGTGTTCGTTGCATGA
AAACTGTCACTTGTTCACTTTTAGATTATGAAGCAGGTAGCGAAGCTGCTACTTACTTTGACTATGTTATCGGTGCTATG
AGTTAA

Upstream 100 bases:

>100_bases
ATTCAAATACATTGAGTCGAAGAACTCCATGTTGCCTGACTATGGACAACGTTAGGAGTATGTCAAGCAACCTTTTACCT
TAACTTTATAGGAAGAGAGC

Downstream 100 bases:

>100_bases
GGCTAAATATCTTTATAGATGTTAGATAAAAATAGATGTTAGATAAAATTTGATGATCAAGGAATATTTGAACAATTTAA
AACTTCCTGAAATATCAAGT

Product: phycobilisome protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MSIVTKSIVNADAEARYLSPGELERIKDFVKAGETRVRIAQVMTESREKIIKEAGQQLFQKRPDVVSPGGNAYGEEMTAT
CLRDLDYYLRLISYGIVSGDVTPIEEIGLVGVREMYKSLGTPIEAVAEGVRCMKTVTCSLLDYEAGSEAATYFDYVIGAM
S

Sequences:

>Translated_161_residues
MSIVTKSIVNADAEARYLSPGELERIKDFVKAGETRVRIAQVMTESREKIIKEAGQQLFQKRPDVVSPGGNAYGEEMTAT
CLRDLDYYLRLISYGIVSGDVTPIEEIGLVGVREMYKSLGTPIEAVAEGVRCMKTVTCSLLDYEAGSEAATYFDYVIGAM
S
>Mature_160_residues
SIVTKSIVNADAEARYLSPGELERIKDFVKAGETRVRIAQVMTESREKIIKEAGQQLFQKRPDVVSPGGNAYGEEMTATC
LRDLDYYLRLISYGIVSGDVTPIEEIGLVGVREMYKSLGTPIEAVAEGVRCMKTVTCSLLDYEAGSEAATYFDYVIGAMS

Specific function: Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex. Allophycocyanin has a maximum absorption at approximately 650 nanometers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Forms the core of the phycobilisome [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009050
- InterPro:   IPR012128 [H]

Pfam domain/function: PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 17677; Mature: 17546

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIVTKSIVNADAEARYLSPGELERIKDFVKAGETRVRIAQVMTESREKIIKEAGQQLFQ
CCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KRPDVVSPGGNAYGEEMTATCLRDLDYYLRLISYGIVSGDVTPIEEIGLVGVREMYKSLG
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC
TPIEAVAEGVRCMKTVTCSLLDYEAGSEAATYFDYVIGAMS
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
SIVTKSIVNADAEARYLSPGELERIKDFVKAGETRVRIAQVMTESREKIIKEAGQQLFQ
CCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KRPDVVSPGGNAYGEEMTATCLRDLDYYLRLISYGIVSGDVTPIEEIGLVGVREMYKSLG
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC
TPIEAVAEGVRCMKTVTCSLLDYEAGSEAATYFDYVIGAMS
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA