| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477086
Identifier: 113477086
GI number: 113477086
Start: 5536705
End: 5537391
Strand: Reverse
Name: 113477086
Synonym: Tery_3598
Alternate gene names: NA
Gene position: 5537391-5536705 (Counterclockwise)
Preceding gene: 113477088
Following gene: 113477085
Centisome position: 71.45
GC content: 31.15
Gene sequence:
>687_bases ATGAAAATATTTAAAGTAAGTCGTAACACAATTTATAATTGGTTGAATTCATGGGAATCATCAAACTTGGTAGGACTATA TAACCAGCCTGGTCGTGGCAGAAAAAAGACCTTTAATTCAGTACAAGAACAACAGATAAAGGACTGGGTAAAAGCAACTC CTAAAAGTCTTGAAAAAGTCCCAGAAAAAATCCCAAAGCAATGGAAAATTAAAGTCAGTAAAAAAACAATTAAAAGAGTA ATAAAATTAGGAAAAATGGGATGGTACAGAATAAAAAGAAGAATAGGCGGTGAACCTATCCCCGGTTTTTACGAGAGGAA AGTTGAGAAGCTAGAACAATTGAAAAGGCAAGAGGAAAAAGGAGAAATAGAAATTAGGTATTTAGATGAAAGTGGGTTTT GTTTAATTCCCTATATTCCTTATGCTTGGCAAGAAACAAATCAAAAAATAGAAATCAAAAGTCAACAAAGTAAAAGACTA AATGTTTTAGGATTTCTTAGTAAATCTAATGAGCTAGAGGCTTACACTTTTAGCTGTAGTATAAATAGTGATGTTGTGAT AGCTTACATAGACAAATTTTGTGAAAAAGTAAATAAAAAGACAGTTTTAGTAATGGATAACTCTTCAATACATCAAAACA ATCTTTTCTGGGATCAAGAAGATGAATGGAGAGAAAAAGGTTTATAA
Upstream 100 bases:
>100_bases TGTTAGACAGAATTTACACTTCCAGAGCAAATATTATCAAGTAAGACAGAGAGCACATTGTATTCAACTAAGCTGGAAGG GATATAAGATATTGGAATTG
Downstream 100 bases:
>100_bases ATATTCTTTTTACCAACTTATTCTACACAGTTAAATATTATAGAAATTTGGTGGCGTTTTATCAAATATAAATGGTTAGA AAGCGAAGCTTATGAGAGTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 228; Mature: 228
Protein sequence:
>228_residues MKIFKVSRNTIYNWLNSWESSNLVGLYNQPGRGRKKTFNSVQEQQIKDWVKATPKSLEKVPEKIPKQWKIKVSKKTIKRV IKLGKMGWYRIKRRIGGEPIPGFYERKVEKLEQLKRQEEKGEIEIRYLDESGFCLIPYIPYAWQETNQKIEIKSQQSKRL NVLGFLSKSNELEAYTFSCSINSDVVIAYIDKFCEKVNKKTVLVMDNSSIHQNNLFWDQEDEWREKGL
Sequences:
>Translated_228_residues MKIFKVSRNTIYNWLNSWESSNLVGLYNQPGRGRKKTFNSVQEQQIKDWVKATPKSLEKVPEKIPKQWKIKVSKKTIKRV IKLGKMGWYRIKRRIGGEPIPGFYERKVEKLEQLKRQEEKGEIEIRYLDESGFCLIPYIPYAWQETNQKIEIKSQQSKRL NVLGFLSKSNELEAYTFSCSINSDVVIAYIDKFCEKVNKKTVLVMDNSSIHQNNLFWDQEDEWREKGL >Mature_228_residues MKIFKVSRNTIYNWLNSWESSNLVGLYNQPGRGRKKTFNSVQEQQIKDWVKATPKSLEKVPEKIPKQWKIKVSKKTIKRV IKLGKMGWYRIKRRIGGEPIPGFYERKVEKLEQLKRQEEKGEIEIRYLDESGFCLIPYIPYAWQETNQKIEIKSQQSKRL NVLGFLSKSNELEAYTFSCSINSDVVIAYIDKFCEKVNKKTVLVMDNSSIHQNNLFWDQEDEWREKGL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27018; Mature: 27018
Theoretical pI: Translated: 10.19; Mature: 10.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIFKVSRNTIYNWLNSWESSNLVGLYNQPGRGRKKTFNSVQEQQIKDWVKATPKSLEKV CEEEECHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH PEKIPKQWKIKVSKKTIKRVIKLGKMGWYRIKRRIGGEPIPGFYERKVEKLEQLKRQEEK HHHCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC GEIEIRYLDESGFCLIPYIPYAWQETNQKIEIKSQQSKRLNVLGFLSKSNELEAYTFSCS CCEEEEEECCCCCEEECCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCEEEEEEEE INSDVVIAYIDKFCEKVNKKTVLVMDNSSIHQNNLFWDQEDEWREKGL CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHCCC >Mature Secondary Structure MKIFKVSRNTIYNWLNSWESSNLVGLYNQPGRGRKKTFNSVQEQQIKDWVKATPKSLEKV CEEEECHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH PEKIPKQWKIKVSKKTIKRVIKLGKMGWYRIKRRIGGEPIPGFYERKVEKLEQLKRQEEK HHHCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC GEIEIRYLDESGFCLIPYIPYAWQETNQKIEIKSQQSKRLNVLGFLSKSNELEAYTFSCS CCEEEEEECCCCCEEECCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCEEEEEEEE INSDVVIAYIDKFCEKVNKKTVLVMDNSSIHQNNLFWDQEDEWREKGL CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA