Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113477086

Identifier: 113477086

GI number: 113477086

Start: 5536705

End: 5537391

Strand: Reverse

Name: 113477086

Synonym: Tery_3598

Alternate gene names: NA

Gene position: 5537391-5536705 (Counterclockwise)

Preceding gene: 113477088

Following gene: 113477085

Centisome position: 71.45

GC content: 31.15

Gene sequence:

>687_bases
ATGAAAATATTTAAAGTAAGTCGTAACACAATTTATAATTGGTTGAATTCATGGGAATCATCAAACTTGGTAGGACTATA
TAACCAGCCTGGTCGTGGCAGAAAAAAGACCTTTAATTCAGTACAAGAACAACAGATAAAGGACTGGGTAAAAGCAACTC
CTAAAAGTCTTGAAAAAGTCCCAGAAAAAATCCCAAAGCAATGGAAAATTAAAGTCAGTAAAAAAACAATTAAAAGAGTA
ATAAAATTAGGAAAAATGGGATGGTACAGAATAAAAAGAAGAATAGGCGGTGAACCTATCCCCGGTTTTTACGAGAGGAA
AGTTGAGAAGCTAGAACAATTGAAAAGGCAAGAGGAAAAAGGAGAAATAGAAATTAGGTATTTAGATGAAAGTGGGTTTT
GTTTAATTCCCTATATTCCTTATGCTTGGCAAGAAACAAATCAAAAAATAGAAATCAAAAGTCAACAAAGTAAAAGACTA
AATGTTTTAGGATTTCTTAGTAAATCTAATGAGCTAGAGGCTTACACTTTTAGCTGTAGTATAAATAGTGATGTTGTGAT
AGCTTACATAGACAAATTTTGTGAAAAAGTAAATAAAAAGACAGTTTTAGTAATGGATAACTCTTCAATACATCAAAACA
ATCTTTTCTGGGATCAAGAAGATGAATGGAGAGAAAAAGGTTTATAA

Upstream 100 bases:

>100_bases
TGTTAGACAGAATTTACACTTCCAGAGCAAATATTATCAAGTAAGACAGAGAGCACATTGTATTCAACTAAGCTGGAAGG
GATATAAGATATTGGAATTG

Downstream 100 bases:

>100_bases
ATATTCTTTTTACCAACTTATTCTACACAGTTAAATATTATAGAAATTTGGTGGCGTTTTATCAAATATAAATGGTTAGA
AAGCGAAGCTTATGAGAGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MKIFKVSRNTIYNWLNSWESSNLVGLYNQPGRGRKKTFNSVQEQQIKDWVKATPKSLEKVPEKIPKQWKIKVSKKTIKRV
IKLGKMGWYRIKRRIGGEPIPGFYERKVEKLEQLKRQEEKGEIEIRYLDESGFCLIPYIPYAWQETNQKIEIKSQQSKRL
NVLGFLSKSNELEAYTFSCSINSDVVIAYIDKFCEKVNKKTVLVMDNSSIHQNNLFWDQEDEWREKGL

Sequences:

>Translated_228_residues
MKIFKVSRNTIYNWLNSWESSNLVGLYNQPGRGRKKTFNSVQEQQIKDWVKATPKSLEKVPEKIPKQWKIKVSKKTIKRV
IKLGKMGWYRIKRRIGGEPIPGFYERKVEKLEQLKRQEEKGEIEIRYLDESGFCLIPYIPYAWQETNQKIEIKSQQSKRL
NVLGFLSKSNELEAYTFSCSINSDVVIAYIDKFCEKVNKKTVLVMDNSSIHQNNLFWDQEDEWREKGL
>Mature_228_residues
MKIFKVSRNTIYNWLNSWESSNLVGLYNQPGRGRKKTFNSVQEQQIKDWVKATPKSLEKVPEKIPKQWKIKVSKKTIKRV
IKLGKMGWYRIKRRIGGEPIPGFYERKVEKLEQLKRQEEKGEIEIRYLDESGFCLIPYIPYAWQETNQKIEIKSQQSKRL
NVLGFLSKSNELEAYTFSCSINSDVVIAYIDKFCEKVNKKTVLVMDNSSIHQNNLFWDQEDEWREKGL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27018; Mature: 27018

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIFKVSRNTIYNWLNSWESSNLVGLYNQPGRGRKKTFNSVQEQQIKDWVKATPKSLEKV
CEEEECHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
PEKIPKQWKIKVSKKTIKRVIKLGKMGWYRIKRRIGGEPIPGFYERKVEKLEQLKRQEEK
HHHCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
GEIEIRYLDESGFCLIPYIPYAWQETNQKIEIKSQQSKRLNVLGFLSKSNELEAYTFSCS
CCEEEEEECCCCCEEECCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCEEEEEEEE
INSDVVIAYIDKFCEKVNKKTVLVMDNSSIHQNNLFWDQEDEWREKGL
CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHCCC
>Mature Secondary Structure
MKIFKVSRNTIYNWLNSWESSNLVGLYNQPGRGRKKTFNSVQEQQIKDWVKATPKSLEKV
CEEEECHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
PEKIPKQWKIKVSKKTIKRVIKLGKMGWYRIKRRIGGEPIPGFYERKVEKLEQLKRQEEK
HHHCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
GEIEIRYLDESGFCLIPYIPYAWQETNQKIEIKSQQSKRLNVLGFLSKSNELEAYTFSCS
CCEEEEEECCCCCEEECCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCEEEEEEEE
INSDVVIAYIDKFCEKVNKKTVLVMDNSSIHQNNLFWDQEDEWREKGL
CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA