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The map label for this gene is pds [H]

Identifier: 113477073

GI number: 113477073

Start: 5504267

End: 5506213

Strand: Reverse

Name: pds [H]

Synonym: Tery_3577

Alternate gene names: 113477073

Gene position: 5506213-5504267 (Counterclockwise)

Preceding gene: 113477074

Following gene: 113477070

Centisome position: 71.05

GC content: 32.72

Gene sequence:

>1947_bases
ATGAATCAATTAACTAATCTGAAATCATTTACATCAGTTTCGCGACGAACAATACTCAAATTATTAACTATTGGAGCTAC
TACTGGTTTACTAGGTTATACTCGATTCTCTAAACCTCAACCAAGGGTTTTTACCCAAGATAATCTAGATTTACCACAAT
ATTTAAACAATGATAAAAGTGTAGTAGTAGTTGGGGGTGGATTAGCAGGATTAGCTTGTGCTTATGAACTTACTCAGCGA
GGTTTTACAGTTACTTTATTAGAAAGATCCCCACAACTAGGAGGAAAAATTGCTAGTTGGTCTGTTGATGTAGGAGGAGA
AAAGTTTATAATGGAACATGGTTTTCATGGTTTTTTTCCTCAATATTACAATCTGAATAGTTTGGTAGAAGAATTGAATA
TTACAGATAATTTTCAATCTTTAGAGTTCTATTCTGTGGTGTTTAGAAAAGGGAAATATAACCCAGAAGTATTTCATCCT
AATAGTTCTGTGTTTCCTTGGAATATAGTAGATTTAGCAATTTCTTCTTCTAATAGATTTAGCTGGGGAATTAATTTAGC
CAAGCCTAAACATTGGGAAGTATTTCGTGCTATAGGTGGCTTTAATTTAGAGAAAACTTATCATAAATTTGACAATTTAT
CTGTTGCTGAATGGGTCGAAAAAGATTTTCCTCAAGGATTATATGATTTGTATTTTTTGCCTTTTGCTAAATCAAGTCTT
AATGCTCCAAACAAGTTGAGCGTTGCCGAATTAATGCAATTTTTTCACTTCTATTTTTTTGGTAATCCAGAAGGTTTAGC
TTTTAATGGTACTAGACAAGATATGGGTACAAGTTTAGTACAACCAGTTGCTAAAGAAATTGAGAATAAGGGAGGTAAAA
TTTTTACTGATGTTGGTGTTAGTGGAATTAATTTGCAAAACAATAAGATTAGTTCAATTAGTTATCAGTTAGGAGAGGTG
AAAAGTTTGATTCCTTTTTGGGTAGAACGTAATTTAGAAATCAATCAAGAAAAAGTTAATTATTTTGGTTCAAGTGATCG
CCTCTTTGCGGTTAAATATAATTCAAATGAGGCTATTTCTTTGACTTGTACTCATCAAGGTTGTACTGTTATCTTAGCAG
AAGATGGAAATTTTTACTGCCCTTGTCACGGAGCAGTTTATGATAGAAAAGGAAAAGTATTGACAGGTCCGGCAAAACAA
AATTTATCGCGCTATAAAATTACTCAACGCCAAGAAAATCAAGTTCAGTTAGTTAGCATAAAGGAAAATAAATCAGAAAT
TATATCCACAGAAATTAAAGCTGATTATTATGTATTTGCTACAGATGTTCCGGGAGTTCAACACTTATTTAATTTGATGG
AAGGAGAAGTAAATCAAAATGTAAAATCTCAGGTACAAAAATTAAATATAGCTGACCCCTTTGCAGTTTGTCGTTTTTGG
TTTGACCGAGACTTTGACTGGAAACATAGCAATTTTACTTCTCTATCCGGTTATCAATTAATTGATAGTATTACTCTCTA
TCATCGCATTCAAAAACAGTTCATTCAATGGCATAAAAAAACAGGTGGTAGTGTTGTGGAGTTACACGCCTATTGTTACA
AAGAAAAACAGTTTCCTACTCAAGAAATTTTACTCACAACTTTTGCACAAGAATTATATGAAATTGTACCAGAATTAAAG
GAAGCTAATTTGCTGCATCAAGAGTTAGTAAACCAGAAAAATTTTTCCGGTTATCCTCCAGGTAGTTATCAACAACGTCC
AGAAATTAACAGTGGTATTTCTAATTTAATGTTTGCTGGAGATTGGGTAAAAATGCCATTTCCTTGTGGTTTAATGGAAA
GAGCTACTAGTAGTGGGTTATTAGCAGCAAATGAAATTCTTTCTAGAGAAGGTTTACAAAGACGAAAATTATTCTCAGTC
AACCCTGAAGGTATTCTCAAAGTTTGA

Upstream 100 bases:

>100_bases
ATTATAGATTTTTATAGGCAAAAATTATGCACTAAATTACAATATATCAGGACGCTAATCGGCCAAATAAAAATTTCTAA
CAGTCATCAAATTATTGCTG

Downstream 100 bases:

>100_bases
TTCTAGGGAGTAGGGATCTCTATTCCCTCAAACAAAATCAGATCATGTAGGCCTGGATAATTCTATATTCTCAAAAACTT
TTCTCCATTACCCAATAGCA

Product: UDP-galactopyranose mutase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 648; Mature: 648

Protein sequence:

>648_residues
MNQLTNLKSFTSVSRRTILKLLTIGATTGLLGYTRFSKPQPRVFTQDNLDLPQYLNNDKSVVVVGGGLAGLACAYELTQR
GFTVTLLERSPQLGGKIASWSVDVGGEKFIMEHGFHGFFPQYYNLNSLVEELNITDNFQSLEFYSVVFRKGKYNPEVFHP
NSSVFPWNIVDLAISSSNRFSWGINLAKPKHWEVFRAIGGFNLEKTYHKFDNLSVAEWVEKDFPQGLYDLYFLPFAKSSL
NAPNKLSVAELMQFFHFYFFGNPEGLAFNGTRQDMGTSLVQPVAKEIENKGGKIFTDVGVSGINLQNNKISSISYQLGEV
KSLIPFWVERNLEINQEKVNYFGSSDRLFAVKYNSNEAISLTCTHQGCTVILAEDGNFYCPCHGAVYDRKGKVLTGPAKQ
NLSRYKITQRQENQVQLVSIKENKSEIISTEIKADYYVFATDVPGVQHLFNLMEGEVNQNVKSQVQKLNIADPFAVCRFW
FDRDFDWKHSNFTSLSGYQLIDSITLYHRIQKQFIQWHKKTGGSVVELHAYCYKEKQFPTQEILLTTFAQELYEIVPELK
EANLLHQELVNQKNFSGYPPGSYQQRPEINSGISNLMFAGDWVKMPFPCGLMERATSSGLLAANEILSREGLQRRKLFSV
NPEGILKV

Sequences:

>Translated_648_residues
MNQLTNLKSFTSVSRRTILKLLTIGATTGLLGYTRFSKPQPRVFTQDNLDLPQYLNNDKSVVVVGGGLAGLACAYELTQR
GFTVTLLERSPQLGGKIASWSVDVGGEKFIMEHGFHGFFPQYYNLNSLVEELNITDNFQSLEFYSVVFRKGKYNPEVFHP
NSSVFPWNIVDLAISSSNRFSWGINLAKPKHWEVFRAIGGFNLEKTYHKFDNLSVAEWVEKDFPQGLYDLYFLPFAKSSL
NAPNKLSVAELMQFFHFYFFGNPEGLAFNGTRQDMGTSLVQPVAKEIENKGGKIFTDVGVSGINLQNNKISSISYQLGEV
KSLIPFWVERNLEINQEKVNYFGSSDRLFAVKYNSNEAISLTCTHQGCTVILAEDGNFYCPCHGAVYDRKGKVLTGPAKQ
NLSRYKITQRQENQVQLVSIKENKSEIISTEIKADYYVFATDVPGVQHLFNLMEGEVNQNVKSQVQKLNIADPFAVCRFW
FDRDFDWKHSNFTSLSGYQLIDSITLYHRIQKQFIQWHKKTGGSVVELHAYCYKEKQFPTQEILLTTFAQELYEIVPELK
EANLLHQELVNQKNFSGYPPGSYQQRPEINSGISNLMFAGDWVKMPFPCGLMERATSSGLLAANEILSREGLQRRKLFSV
NPEGILKV
>Mature_648_residues
MNQLTNLKSFTSVSRRTILKLLTIGATTGLLGYTRFSKPQPRVFTQDNLDLPQYLNNDKSVVVVGGGLAGLACAYELTQR
GFTVTLLERSPQLGGKIASWSVDVGGEKFIMEHGFHGFFPQYYNLNSLVEELNITDNFQSLEFYSVVFRKGKYNPEVFHP
NSSVFPWNIVDLAISSSNRFSWGINLAKPKHWEVFRAIGGFNLEKTYHKFDNLSVAEWVEKDFPQGLYDLYFLPFAKSSL
NAPNKLSVAELMQFFHFYFFGNPEGLAFNGTRQDMGTSLVQPVAKEIENKGGKIFTDVGVSGINLQNNKISSISYQLGEV
KSLIPFWVERNLEINQEKVNYFGSSDRLFAVKYNSNEAISLTCTHQGCTVILAEDGNFYCPCHGAVYDRKGKVLTGPAKQ
NLSRYKITQRQENQVQLVSIKENKSEIISTEIKADYYVFATDVPGVQHLFNLMEGEVNQNVKSQVQKLNIADPFAVCRFW
FDRDFDWKHSNFTSLSGYQLIDSITLYHRIQKQFIQWHKKTGGSVVELHAYCYKEKQFPTQEILLTTFAQELYEIVPELK
EANLLHQELVNQKNFSGYPPGSYQQRPEINSGISNLMFAGDWVKMPFPCGLMERATSSGLLAANEILSREGLQRRKLFSV
NPEGILKV

Specific function: This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene [H]

COG id: COG3349

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR014102 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 73604; Mature: 73604

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: PS00200 RIESKE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQLTNLKSFTSVSRRTILKLLTIGATTGLLGYTRFSKPQPRVFTQDNLDLPQYLNNDKS
CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEECCCCCCCHHHHCCCCE
VVVVGGGLAGLACAYELTQRGFTVTLLERSPQLGGKIASWSVDVGGEKFIMEHGFHGFFP
EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEECCCCHHHHHCCCCCCCC
QYYNLNSLVEELNITDNFQSLEFYSVVFRKGKYNPEVFHPNSSVFPWNIVDLAISSSNRF
CCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEECCCCCCCCEEEEEEEEECCCCE
SWGINLAKPKHWEVFRAIGGFNLEKTYHKFDNLSVAEWVEKDFPQGLYDLYFLPFAKSSL
EEEEECCCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHCCHHHCC
NAPNKLSVAELMQFFHFYFFGNPEGLAFNGTRQDMGTSLVQPVAKEIENKGGKIFTDVGV
CCCCCCCHHHHHHHHHHHEECCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC
SGINLQNNKISSISYQLGEVKSLIPFWVERNLEINQEKVNYFGSSDRLFAVKYNSNEAIS
CEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCEEEEEECCCCEEE
LTCTHQGCTVILAEDGNFYCPCHGAVYDRKGKVLTGPAKQNLSRYKITQRQENQVQLVSI
EEEECCCCEEEEECCCCEEECCCCCEECCCCCEEECHHHHCHHHHCCCCCCCCCEEEEEE
KENKSEIISTEIKADYYVFATDVPGVQHLFNLMEGEVNQNVKSQVQKLNIADPFAVCRFW
ECCCHHHHHHEECCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHH
FDRDFDWKHSNFTSLSGYQLIDSITLYHRIQKQFIQWHKKTGGSVVELHAYCYKEKQFPT
HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCH
QEILLTTFAQELYEIVPELKEANLLHQELVNQKNFSGYPPGSYQQRPEINSGISNLMFAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCHHHHEECC
DWVKMPFPCGLMERATSSGLLAANEILSREGLQRRKLFSVNPEGILKV
CCEECCCCCCHHHHCCCCCCHHHHHHHHHCCCCHHHEEECCCCCCEEC
>Mature Secondary Structure
MNQLTNLKSFTSVSRRTILKLLTIGATTGLLGYTRFSKPQPRVFTQDNLDLPQYLNNDKS
CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEECCCCCCCHHHHCCCCE
VVVVGGGLAGLACAYELTQRGFTVTLLERSPQLGGKIASWSVDVGGEKFIMEHGFHGFFP
EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEECCCCHHHHHCCCCCCCC
QYYNLNSLVEELNITDNFQSLEFYSVVFRKGKYNPEVFHPNSSVFPWNIVDLAISSSNRF
CCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEECCCCCCCCEEEEEEEEECCCCE
SWGINLAKPKHWEVFRAIGGFNLEKTYHKFDNLSVAEWVEKDFPQGLYDLYFLPFAKSSL
EEEEECCCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHCCHHHCC
NAPNKLSVAELMQFFHFYFFGNPEGLAFNGTRQDMGTSLVQPVAKEIENKGGKIFTDVGV
CCCCCCCHHHHHHHHHHHEECCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC
SGINLQNNKISSISYQLGEVKSLIPFWVERNLEINQEKVNYFGSSDRLFAVKYNSNEAIS
CEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCEEEEEECCCCEEE
LTCTHQGCTVILAEDGNFYCPCHGAVYDRKGKVLTGPAKQNLSRYKITQRQENQVQLVSI
EEEECCCCEEEEECCCCEEECCCCCEECCCCCEEECHHHHCHHHHCCCCCCCCCEEEEEE
KENKSEIISTEIKADYYVFATDVPGVQHLFNLMEGEVNQNVKSQVQKLNIADPFAVCRFW
ECCCHHHHHHEECCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHH
FDRDFDWKHSNFTSLSGYQLIDSITLYHRIQKQFIQWHKKTGGSVVELHAYCYKEKQFPT
HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCH
QEILLTTFAQELYEIVPELKEANLLHQELVNQKNFSGYPPGSYQQRPEINSGISNLMFAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCHHHHEECC
DWVKMPFPCGLMERATSSGLLAANEILSREGLQRRKLFSVNPEGILKV
CCEECCCCCCHHHHCCCCCCHHHHHHHHHCCCCHHHEEECCCCCCEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1907510 [H]