Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
---|---|
Accession | NC_008312 |
Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113476964
Identifier: 113476964
GI number: 113476964
Start: 5294786
End: 5295823
Strand: Reverse
Name: 113476964
Synonym: Tery_3460
Alternate gene names: NA
Gene position: 5295823-5294786 (Counterclockwise)
Preceding gene: 113476967
Following gene: 113476963
Centisome position: 68.33
GC content: 30.92
Gene sequence:
>1038_bases ATGAATATTATAGATAAACTAAATGATTTTATTAATCAAACAAAAGAGTCTAAAGAAATTAAAAGGGCCTTGGCCGTAAA AATGACCTTGTCAGGAAAATCCTACCATGAAGTCAAAGAATTATTAAATGTTTCTCACAGTTTTATTAGTGAATGGAAAA ACCAAGCATTATTTCATGGTGTAGAAAGTTTAAGGCTTCAGTATCAAGGGAGACAAGGTTACTTAAAAACGGTCGAAAAA GAGAAAACAATTGAGTGGTTGAGAGCACAAGATTATCTTAGGTTATCAGATTTAAAAAACTACTTACAGGAGCAATATGA TGTGGTTTTTGAGTCTAATCAAAGTTACTATAACTTGTTTAAAGAAGCGGGCATAAGTTGGAAAAAAACTCAAAAAAAGA ATCCTGCTAAAAATGATGAATTAGTAGAAGTTAAAAGAAAAGAAATACAGGAATTTTTAGCTAAATGGCAACCAGAAATA GAAACTGGAAAGCTTACAGTGTTTATGATTGATGAATGTCATCTTCTATGGGGAGACATATTAGGTTATGCTTGGGGAAA AACAGATGAAAGAATAGAAATTGCAATTAAAAATGAAAAAGAAAGACAGACTTATTATGGAGCTTTAGACTATAAAACCA AGGAATTTCTTGTGCAAGAATATGAGAGTGGAAATACTAAAAATACTATTGAATTTATTAAATATTTGCAGAAGCAAAGA CCGGGCAACAAATTGGCAATATTTTGGGATGGGGCAACTTACCATAACTCTCAAGAATTTCGAGAATATTTAATGACAAT TAATCAATACTTATCAGAAGAAGAATTGTTGATAAATTGTACAAGATTTGCTCCCAATGCTCCGGAGCAAAATCCTGTTG AAGATATTTGGTTACAAACCAAAAATTTCAGTATTACTTTTTATCATCTTTGCAGTTCTTTTAAAGTAGTTAAGTGGCTA TTTAAGTTTTTTGCGGATGGTCAAATATTCAATTTCCCAAAACTTTTTCAGTATGAAATTTTGCCGCAACCTACTTAG
Upstream 100 bases:
>100_bases AAACTGTGGGGAGTTAATCCTATTACAGATATATAGCAATCCCATATTGGTCGCAACAGATATAATAGTAAGAATAACAG ATCTAAGAAAAAGACAAAAA
Downstream 100 bases:
>100_bases GATTGCTATAGTTTTTATAGATTCTCAAGTAGAAGACTATGAGAGTTTAGTGAATGGAGCTTTGTCTGGGGTCAAGGTGG TTATTCTCAACTCAATAGAA
Product: transposase
Products: NA
Alternate protein names: Transposase Family Protein; Transposase Of
Number of amino acids: Translated: 345; Mature: 345
Protein sequence:
>345_residues MNIIDKLNDFINQTKESKEIKRALAVKMTLSGKSYHEVKELLNVSHSFISEWKNQALFHGVESLRLQYQGRQGYLKTVEK EKTIEWLRAQDYLRLSDLKNYLQEQYDVVFESNQSYYNLFKEAGISWKKTQKKNPAKNDELVEVKRKEIQEFLAKWQPEI ETGKLTVFMIDECHLLWGDILGYAWGKTDERIEIAIKNEKERQTYYGALDYKTKEFLVQEYESGNTKNTIEFIKYLQKQR PGNKLAIFWDGATYHNSQEFREYLMTINQYLSEEELLINCTRFAPNAPEQNPVEDIWLQTKNFSITFYHLCSSFKVVKWL FKFFADGQIFNFPKLFQYEILPQPT
Sequences:
>Translated_345_residues MNIIDKLNDFINQTKESKEIKRALAVKMTLSGKSYHEVKELLNVSHSFISEWKNQALFHGVESLRLQYQGRQGYLKTVEK EKTIEWLRAQDYLRLSDLKNYLQEQYDVVFESNQSYYNLFKEAGISWKKTQKKNPAKNDELVEVKRKEIQEFLAKWQPEI ETGKLTVFMIDECHLLWGDILGYAWGKTDERIEIAIKNEKERQTYYGALDYKTKEFLVQEYESGNTKNTIEFIKYLQKQR PGNKLAIFWDGATYHNSQEFREYLMTINQYLSEEELLINCTRFAPNAPEQNPVEDIWLQTKNFSITFYHLCSSFKVVKWL FKFFADGQIFNFPKLFQYEILPQPT >Mature_345_residues MNIIDKLNDFINQTKESKEIKRALAVKMTLSGKSYHEVKELLNVSHSFISEWKNQALFHGVESLRLQYQGRQGYLKTVEK EKTIEWLRAQDYLRLSDLKNYLQEQYDVVFESNQSYYNLFKEAGISWKKTQKKNPAKNDELVEVKRKEIQEFLAKWQPEI ETGKLTVFMIDECHLLWGDILGYAWGKTDERIEIAIKNEKERQTYYGALDYKTKEFLVQEYESGNTKNTIEFIKYLQKQR PGNKLAIFWDGATYHNSQEFREYLMTINQYLSEEELLINCTRFAPNAPEQNPVEDIWLQTKNFSITFYHLCSSFKVVKWL FKFFADGQIFNFPKLFQYEILPQPT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41110; Mature: 41110
Theoretical pI: Translated: 7.13; Mature: 7.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIIDKLNDFINQTKESKEIKRALAVKMTLSGKSYHEVKELLNVSHSFISEWKNQALFHG CCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VESLRLQYQGRQGYLKTVEKEKTIEWLRAQDYLRLSDLKNYLQEQYDVVFESNQSYYNLF HHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH KEAGISWKKTQKKNPAKNDELVEVKRKEIQEFLAKWQPEIETGKLTVFMIDECHLLWGDI HHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHH LGYAWGKTDERIEIAIKNEKERQTYYGALDYKTKEFLVQEYESGNTKNTIEFIKYLQKQR HHHHCCCCCCEEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHC PGNKLAIFWDGATYHNSQEFREYLMTINQYLSEEELLINCTRFAPNAPEQNPVEDIWLQT CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHEEEEHHCCCCCCCCCCHHHHHEEC KNFSITFYHLCSSFKVVKWLFKFFADGQIFNFPKLFQYEILPQPT CCCCEEHHHHHHHHHHHHHHHHHHCCCCEECCCHHHEEECCCCCC >Mature Secondary Structure MNIIDKLNDFINQTKESKEIKRALAVKMTLSGKSYHEVKELLNVSHSFISEWKNQALFHG CCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VESLRLQYQGRQGYLKTVEKEKTIEWLRAQDYLRLSDLKNYLQEQYDVVFESNQSYYNLF HHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH KEAGISWKKTQKKNPAKNDELVEVKRKEIQEFLAKWQPEIETGKLTVFMIDECHLLWGDI HHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHH LGYAWGKTDERIEIAIKNEKERQTYYGALDYKTKEFLVQEYESGNTKNTIEFIKYLQKQR HHHHCCCCCCEEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHC PGNKLAIFWDGATYHNSQEFREYLMTINQYLSEEELLINCTRFAPNAPEQNPVEDIWLQT CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHEEEEHHCCCCCCCCCCHHHHHEEC KNFSITFYHLCSSFKVVKWLFKFFADGQIFNFPKLFQYEILPQPT CCCCEEHHHHHHHHHHHHHHHHHHCCCCEECCCHHHEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA