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The map label for this gene is secY [H]

Identifier: 113476561

GI number: 113476561

Start: 4647560

End: 4648900

Strand: Reverse

Name: secY [H]

Synonym: Tery_2994

Alternate gene names: 113476561

Gene position: 4648900-4647560 (Counterclockwise)

Preceding gene: 113476562

Following gene: 113476560

Centisome position: 59.98

GC content: 38.26

Gene sequence:

>1341_bases
ATGGACATTAGTAGAGATAAGGCACCAACTGCTCAAGAGACATTCTTGCAGATGGCCCAAGCAGCAGGATTGCGAGGGCG
ACTGCTAGTAACAATAGGTTTACTTCTATTAGTGCGTTTAGGTGTTTATCTACCAGTACCAGGAATAAATAGAGAAGCTT
TTCAAGCTAGAATTGGAGACCAGGCTTTAACAGGCTTCCTAGACCTTTTTTCTGGTGGTGGTTTTTCAGCATTAGGTATT
TTTGCATTAGGGATTATACCTTACATTAACGCATCAATTATTATTCAATTGATGACGGCAGCGCTACCAAGTTTAGAAAA
CTTGCAAAAAAATGAGGGTGAGGCAGGACGTCGAAAGATTTCTCAAATTACTCGCTATGTAGCACTGGGTTGGTCGGTTT
TACAAAGCTTTGGTTTAGCTATATATCTTAATAGCTCATCTGTAGATATTAATGGAGAACTGGTAACTGTATCAATTAAT
CCAGGATCTCTATTTATTGCTAAAACTATTTTGGCAATTACAGCAGGTTCAATGTTTGTGATGTGGATATCAGAACTAAT
TACAGAAAGAGGTATTGGAAATGGTGCATCCTTACTTATTTTTGTAAATATTGTTGCTGTACTGCCTCAGTCATTAGGTG
ACACTATTAAACTTTTTGAAGGAGGAGACCGAGCAATAGTTGGTCGGGCAATTATTTTGCTGCTGGTATTCCTCGTAATG
ATAGTAGGTATTGTATTTGTACAAGAGGGCAGTCGCAGGATACCTATACTTTCAGCTCGTCGTCAAGTGGGTAGAAAATT
ATATAGGGAAACAAAAAGCTATCTACCTTTACGGTTGAACCAAGGAGGGGTAATGCCAATTATTTTTGCCTCAGCAGTTC
TGATATTACCTGTATCCTTAGCTCAGTTTGCGAATAGCCCTATTATATCTCAGATTGCTACTGCTATAAGTCCTAGTGGT
CCTACACCCTGGCTATATGCTTTATTTTATTTCGTTTTGATCCTTTTCTTCAGTTACTTCTACGCTTCTCTAATTATGAA
CCCAGTGGATATGTCCCAAAATCTGAAGAAAATGGGGGCAAGTATTCCAGGTATTCGTCCAGGTAAAACGACCAGTGACT
ATATAGAGAAAGTTTTGAATAGGTTGACTTTCCTAGGAGCTATTTTTCTGGGTTTAGTAGCTATAGTTCCTACTATAGTA
GAAAGTGCTACTCGTGTACCTACATTTAGAGGATTAGGAGCTACTTCTCTATTAATTCTAGTAGGTGTAGCAATAGATAC
AGCCAAACAAATTCAAACTTATGTTATCTCTCAAAGATACGAAGGAATGGTTAAGCAATAG

Upstream 100 bases:

>100_bases
AATTCAACAAAGTAATAAAACAACCAATATATCTGGAAGCGGAGGATTATGCCCAACTCTGCTAAAATCAAAAATATAAA
AAATCAAATCTCAAATAGAT

Downstream 100 bases:

>100_bases
TGGTAAAACTGGTATTTTTAGGTCCACCAGGAGCGGGGAAAGGAACACAAGCATCTCTCATAGCAGATTTTTATAAAGTT
CCCCATATTTCTACTGGTGA

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MDISRDKAPTAQETFLQMAQAAGLRGRLLVTIGLLLLVRLGVYLPVPGINREAFQARIGDQALTGFLDLFSGGGFSALGI
FALGIIPYINASIIIQLMTAALPSLENLQKNEGEAGRRKISQITRYVALGWSVLQSFGLAIYLNSSSVDINGELVTVSIN
PGSLFIAKTILAITAGSMFVMWISELITERGIGNGASLLIFVNIVAVLPQSLGDTIKLFEGGDRAIVGRAIILLLVFLVM
IVGIVFVQEGSRRIPILSARRQVGRKLYRETKSYLPLRLNQGGVMPIIFASAVLILPVSLAQFANSPIISQIATAISPSG
PTPWLYALFYFVLILFFSYFYASLIMNPVDMSQNLKKMGASIPGIRPGKTTSDYIEKVLNRLTFLGAIFLGLVAIVPTIV
ESATRVPTFRGLGATSLLILVGVAIDTAKQIQTYVISQRYEGMVKQ

Sequences:

>Translated_446_residues
MDISRDKAPTAQETFLQMAQAAGLRGRLLVTIGLLLLVRLGVYLPVPGINREAFQARIGDQALTGFLDLFSGGGFSALGI
FALGIIPYINASIIIQLMTAALPSLENLQKNEGEAGRRKISQITRYVALGWSVLQSFGLAIYLNSSSVDINGELVTVSIN
PGSLFIAKTILAITAGSMFVMWISELITERGIGNGASLLIFVNIVAVLPQSLGDTIKLFEGGDRAIVGRAIILLLVFLVM
IVGIVFVQEGSRRIPILSARRQVGRKLYRETKSYLPLRLNQGGVMPIIFASAVLILPVSLAQFANSPIISQIATAISPSG
PTPWLYALFYFVLILFFSYFYASLIMNPVDMSQNLKKMGASIPGIRPGKTTSDYIEKVLNRLTFLGAIFLGLVAIVPTIV
ESATRVPTFRGLGATSLLILVGVAIDTAKQIQTYVISQRYEGMVKQ
>Mature_446_residues
MDISRDKAPTAQETFLQMAQAAGLRGRLLVTIGLLLLVRLGVYLPVPGINREAFQARIGDQALTGFLDLFSGGGFSALGI
FALGIIPYINASIIIQLMTAALPSLENLQKNEGEAGRRKISQITRYVALGWSVLQSFGLAIYLNSSSVDINGELVTVSIN
PGSLFIAKTILAITAGSMFVMWISELITERGIGNGASLLIFVNIVAVLPQSLGDTIKLFEGGDRAIVGRAIILLLVFLVM
IVGIVFVQEGSRRIPILSARRQVGRKLYRETKSYLPLRLNQGGVMPIIFASAVLILPVSLAQFANSPIISQIATAISPSG
PTPWLYALFYFVLILFFSYFYASLIMNPVDMSQNLKKMGASIPGIRPGKTTSDYIEKVLNRLTFLGAIFLGLVAIVPTIV
ESATRVPTFRGLGATSLLILVGVAIDTAKQIQTYVISQRYEGMVKQ

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=430, Percent_Identity=41.8604651162791, Blast_Score=284, Evalue=8e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 48218; Mature: 48218

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDISRDKAPTAQETFLQMAQAAGLRGRLLVTIGLLLLVRLGVYLPVPGINREAFQARIGD
CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
QALTGFLDLFSGGGFSALGIFALGIIPYINASIIIQLMTAALPSLENLQKNEGEAGRRKI
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHH
SQITRYVALGWSVLQSFGLAIYLNSSSVDINGELVTVSINPGSLFIAKTILAITAGSMFV
HHHHHHHHHHHHHHHHCCEEEEECCCCEEECCEEEEEEECCCHHHHHHHHHHHHCCHHHH
MWISELITERGIGNGASLLIFVNIVAVLPQSLGDTIKLFEGGDRAIVGRAIILLLVFLVM
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
IVGIVFVQEGSRRIPILSARRQVGRKLYRETKSYLPLRLNQGGVMPIIFASAVLILPVSL
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHH
AQFANSPIISQIATAISPSGPTPWLYALFYFVLILFFSYFYASLIMNPVDMSQNLKKMGA
HHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
SIPGIRPGKTTSDYIEKVLNRLTFLGAIFLGLVAIVPTIVESATRVPTFRGLGATSLLIL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
VGVAIDTAKQIQTYVISQRYEGMVKQ
HHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDISRDKAPTAQETFLQMAQAAGLRGRLLVTIGLLLLVRLGVYLPVPGINREAFQARIGD
CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
QALTGFLDLFSGGGFSALGIFALGIIPYINASIIIQLMTAALPSLENLQKNEGEAGRRKI
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHH
SQITRYVALGWSVLQSFGLAIYLNSSSVDINGELVTVSINPGSLFIAKTILAITAGSMFV
HHHHHHHHHHHHHHHHCCEEEEECCCCEEECCEEEEEEECCCHHHHHHHHHHHHCCHHHH
MWISELITERGIGNGASLLIFVNIVAVLPQSLGDTIKLFEGGDRAIVGRAIILLLVFLVM
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
IVGIVFVQEGSRRIPILSARRQVGRKLYRETKSYLPLRLNQGGVMPIIFASAVLILPVSL
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHH
AQFANSPIISQIATAISPSGPTPWLYALFYFVLILFFSYFYASLIMNPVDMSQNLKKMGA
HHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
SIPGIRPGKTTSDYIEKVLNRLTFLGAIFLGLVAIVPTIVESATRVPTFRGLGATSLLIL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
VGVAIDTAKQIQTYVISQRYEGMVKQ
HHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1420358 [H]