| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476545
Identifier: 113476545
GI number: 113476545
Start: 4627682
End: 4629046
Strand: Reverse
Name: 113476545
Synonym: Tery_2975
Alternate gene names: NA
Gene position: 4629046-4627682 (Counterclockwise)
Preceding gene: 113476546
Following gene: 113476544
Centisome position: 59.73
GC content: 32.45
Gene sequence:
>1365_bases ATGGGACTAATATTATTTATTCAAGTACGTGCTTATGCATTGTTCCAAAATATCGGAACTATTGCATTATTATTGATTTT TTTACCATTTAATTTATTAAGGGTAATACCTTTACTACTCTGGAATTTAATCAGTCTACCATTTACCAAAAAATTAGTGG CAGATAATCCCAAAAATATCTTAATCACGGGCGCAAAAATGACAAAATGCTTGCAACTTGCCCGTTCATTTCATGCAGCA GGTCATAAAGCTTTTATATTAGAAACAAATAAATATTGGTTATCAGGAAATAGATTTTCTAATGCCGTTACAGGTTTCTA TACAATACCTGCTCCAAATAAAGATTGGGATGGTTATTGTCAGGGATTATTAGAGATTGTAAAAAAAGAAAACATAGATG TATTTATTCCAGTATCTAGCCCAGTAGGAAGTTACTATGAATCTTTAGCAAAACCACTTTTATCTGAATATTGTGAAGTT TTGCACTTTGACGTAGAAGTAACTCAAATGTTAGATAACAAGTTCACATTTATGGAAAAAGCTAAAAGTTTTGGTTTATC TGTACCAAAATCTTTTTTAATTACAGACCCAAAACAAATTCTCAATTTTGACTTTGCTGCTGATGGGAGTAGATATATTC TTAAAAGTATTCCTTACGATTCAGTACGTCGTTTAGACTTGACAAAATTGCCCATGAATTCAAGGGCAGAAATGGAACAA TTTGTTGGAAATTTGCCTATTAGTGAAGAGAAACCATGGATTATGCAAGAGTTTGTTAAAGGCAAAGAATATTGTACTCA TAGCACTGTTAGAAAAGGGAAAATCAGACTGTATTGCTGTTGCGAATCATCAGAATTTCAAGTCAATTATGCTCATGTTG ATAATCCACAAATTTACGATTGGGTAGAAAAATTTGTTAGAGAATTAAATATTACTGGTCAAATTTCATTTGATTTTATT CAGACAGAGGATGGTCGAGTTTTTCCCATAGAATGTAATCCCAGAACTCATTCAGCAATTACAACTTTTCATGACCATCC AGGGGTAGCAGATGCTTATTTAAAAGATAGTCAAAATGATAATGAAAACCCAATATTACCGGGACTAAATAGTCAACCTA CTTATTGGACTTACCATGAATTATGGAGGCTAACAGGAGTTAGGTCATTAGAGCAATTGAAAGCTTGGATTAGAAGAATT AATCAAGGAAAAGATGCTATTTTTCAAGTGAATGACCCCTTACCATTTTTGATGGTTCACCACTGGCAAATTTTCTTATT ACTACTCAATAATTTACGCAAATTTAAAGGTTGGGTAAGAATTGACTTTAATATTGGAAAACTGGTAGAGTTGGGAGGGG ATTAA
Upstream 100 bases:
>100_bases AGTTGAACTTGGAAAGCTTTCAGGCTAATGATCACCTTCTTTTCACCAAAGCATAAATGAAGACTCATAAAATATTGTTA TCTCTACAAAACTACTAAAG
Downstream 100 bases:
>100_bases AGGTCACTATTTAGCTATTTGTCTTTTCTAGACAAGATACTTATTTATTTGCAAGCAGCGTTTACAAGTCAGCTAAAAAC TCAAGGCTACATAAGCTGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 454; Mature: 453
Protein sequence:
>454_residues MGLILFIQVRAYALFQNIGTIALLLIFLPFNLLRVIPLLLWNLISLPFTKKLVADNPKNILITGAKMTKCLQLARSFHAA GHKAFILETNKYWLSGNRFSNAVTGFYTIPAPNKDWDGYCQGLLEIVKKENIDVFIPVSSPVGSYYESLAKPLLSEYCEV LHFDVEVTQMLDNKFTFMEKAKSFGLSVPKSFLITDPKQILNFDFAADGSRYILKSIPYDSVRRLDLTKLPMNSRAEMEQ FVGNLPISEEKPWIMQEFVKGKEYCTHSTVRKGKIRLYCCCESSEFQVNYAHVDNPQIYDWVEKFVRELNITGQISFDFI QTEDGRVFPIECNPRTHSAITTFHDHPGVADAYLKDSQNDNENPILPGLNSQPTYWTYHELWRLTGVRSLEQLKAWIRRI NQGKDAIFQVNDPLPFLMVHHWQIFLLLLNNLRKFKGWVRIDFNIGKLVELGGD
Sequences:
>Translated_454_residues MGLILFIQVRAYALFQNIGTIALLLIFLPFNLLRVIPLLLWNLISLPFTKKLVADNPKNILITGAKMTKCLQLARSFHAA GHKAFILETNKYWLSGNRFSNAVTGFYTIPAPNKDWDGYCQGLLEIVKKENIDVFIPVSSPVGSYYESLAKPLLSEYCEV LHFDVEVTQMLDNKFTFMEKAKSFGLSVPKSFLITDPKQILNFDFAADGSRYILKSIPYDSVRRLDLTKLPMNSRAEMEQ FVGNLPISEEKPWIMQEFVKGKEYCTHSTVRKGKIRLYCCCESSEFQVNYAHVDNPQIYDWVEKFVRELNITGQISFDFI QTEDGRVFPIECNPRTHSAITTFHDHPGVADAYLKDSQNDNENPILPGLNSQPTYWTYHELWRLTGVRSLEQLKAWIRRI NQGKDAIFQVNDPLPFLMVHHWQIFLLLLNNLRKFKGWVRIDFNIGKLVELGGD >Mature_453_residues GLILFIQVRAYALFQNIGTIALLLIFLPFNLLRVIPLLLWNLISLPFTKKLVADNPKNILITGAKMTKCLQLARSFHAAG HKAFILETNKYWLSGNRFSNAVTGFYTIPAPNKDWDGYCQGLLEIVKKENIDVFIPVSSPVGSYYESLAKPLLSEYCEVL HFDVEVTQMLDNKFTFMEKAKSFGLSVPKSFLITDPKQILNFDFAADGSRYILKSIPYDSVRRLDLTKLPMNSRAEMEQF VGNLPISEEKPWIMQEFVKGKEYCTHSTVRKGKIRLYCCCESSEFQVNYAHVDNPQIYDWVEKFVRELNITGQISFDFIQ TEDGRVFPIECNPRTHSAITTFHDHPGVADAYLKDSQNDNENPILPGLNSQPTYWTYHELWRLTGVRSLEQLKAWIRRIN QGKDAIFQVNDPLPFLMVHHWQIFLLLLNNLRKFKGWVRIDFNIGKLVELGGD
Specific function: Unknown
COG id: COG0458
COG function: function code EF; Carbamoylphosphate synthase large subunit (split gene in MJ)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Drosophila melanogaster, GI21355169, Length=440, Percent_Identity=27.7272727272727, Blast_Score=116, Evalue=3e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52321; Mature: 52190
Theoretical pI: Translated: 8.01; Mature: 8.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLILFIQVRAYALFQNIGTIALLLIFLPFNLLRVIPLLLWNLISLPFTKKLVADNPKNI CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEE LITGAKMTKCLQLARSFHAAGHKAFILETNKYWLSGNRFSNAVTGFYTIPAPNKDWDGYC EEECHHHHHHHHHHHHHHCCCCEEEEEECCCEEECCCCCCCCEEEEEECCCCCCCHHHHH QGLLEIVKKENIDVFIPVSSPVGSYYESLAKPLLSEYCEVLHFDVEVTQMLDNKFTFMEK HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHH AKSFGLSVPKSFLITDPKQILNFDFAADGSRYILKSIPYDSVRRLDLTKLPMNSRAEMEQ HHHCCCCCCCHHEECCHHHHHEECCCCCCCHHHHHCCCHHHHHHCCEEECCCCCHHHHHH FVGNLPISEEKPWIMQEFVKGKEYCTHSTVRKGKIRLYCCCESSEFQVNYAHVDNPQIYD HHCCCCCCCCCCHHHHHHHCHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEECCCCHHHH WVEKFVRELNITGQISFDFIQTEDGRVFPIECNPRTHSAITTFHDHPGVADAYLKDSQND HHHHHHHHCCCCEEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHCCCCCC NENPILPGLNSQPTYWTYHELWRLTGVRSLEQLKAWIRRINQGKDAIFQVNDPLPFLMVH CCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHH HWQIFLLLLNNLRKFKGWVRIDFNIGKLVELGGD HHHHHHHHHHHHHHHCCEEEEEECCCEEEECCCC >Mature Secondary Structure GLILFIQVRAYALFQNIGTIALLLIFLPFNLLRVIPLLLWNLISLPFTKKLVADNPKNI CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEE LITGAKMTKCLQLARSFHAAGHKAFILETNKYWLSGNRFSNAVTGFYTIPAPNKDWDGYC EEECHHHHHHHHHHHHHHCCCCEEEEEECCCEEECCCCCCCCEEEEEECCCCCCCHHHHH QGLLEIVKKENIDVFIPVSSPVGSYYESLAKPLLSEYCEVLHFDVEVTQMLDNKFTFMEK HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHH AKSFGLSVPKSFLITDPKQILNFDFAADGSRYILKSIPYDSVRRLDLTKLPMNSRAEMEQ HHHCCCCCCCHHEECCHHHHHEECCCCCCCHHHHHCCCHHHHHHCCEEECCCCCHHHHHH FVGNLPISEEKPWIMQEFVKGKEYCTHSTVRKGKIRLYCCCESSEFQVNYAHVDNPQIYD HHCCCCCCCCCCHHHHHHHCHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEECCCCHHHH WVEKFVRELNITGQISFDFIQTEDGRVFPIECNPRTHSAITTFHDHPGVADAYLKDSQND HHHHHHHHCCCCEEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHCCCCCC NENPILPGLNSQPTYWTYHELWRLTGVRSLEQLKAWIRRINQGKDAIFQVNDPLPFLMVH CCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHH HWQIFLLLLNNLRKFKGWVRIDFNIGKLVELGGD HHHHHHHHHHHHHHHCCEEEEEECCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA