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The map label for this gene is ycfH [C]

Identifier: 113476516

GI number: 113476516

Start: 4571090

End: 4571911

Strand: Reverse

Name: ycfH [C]

Synonym: Tery_2940

Alternate gene names: 113476516

Gene position: 4571911-4571090 (Counterclockwise)

Preceding gene: 113476517

Following gene: 113476515

Centisome position: 58.99

GC content: 37.47

Gene sequence:

>822_bases
ATGGGGAGTAGTAAAATTAACTATAAAAGCCAAATGCAGCTAATTGATACTCACGTCCACATCAACTTTGATATATTCAA
TTCTGACTTGGAAAAGATCCGTAAACGTTGGGAAGAAGCAGGAGTAGTTCACCTAGTTCACTCCTGTGTAGAACCAGAGG
AGTTCCTTTCTATAAAAGCAATAGCAGATCGCTTTCCAGAACTTTCTTATGCAGTTGGCTTACATCCCTTAGATGCTCAC
AAGTGGACATCTGCCACTGCTAATCAAATTAAAAACTGGGGTATATCAGACCCTAGAGTAGTAGCTATAGGTGAAACGGG
ATTAGATTTTTACAAAGCAGATAATCAAGAGCAACAGAAATTTGTCTTCAAACAGCAATTAACTATAGCTCAAGAACTTA
ACAAGCCATTAATTATTCATTGTCGTGATGCAGCTAACTCAATGGCAGAGATTTTGTACGATTTTCAAGAAAATCACAGG
CCTGTTACAGGGGTTATGCACTGCTGGGGAGGTACTCCAGAAGAAACTAAAATGTTCTTAGATATAGGGTTTTATATTAG
CTTTAGTGGAATTGTGACATTTAAAAATGCTACACAAATTCAAGAATCAGCTAAAATAGTACCTGATGATCGCCTGTTAA
TAGAAACAGATTGTCCATTTCTCGCACCAGTGCCAAAGCGGGGCAAACGCAACGAACCTGCTTATGTAAAATATGTGGCC
AAAAAAGTTGCTGAACTTAGAGGTATAACATTAGAAAATTTAGCAGCACAAACCAGCAAAAATGCTTGCGAACTATTTGG
CTTTTCTATTCATTTTCAATAA

Upstream 100 bases:

>100_bases
AGTGCAGTATTATGTAATAGCCTCAAGGATGCGTCCAGTGGCAGCTAGTAGATGTGGAAAAACGCAGTTTTAACTCGTTA
AAAATCTCCGTAACTTTAGT

Downstream 100 bases:

>100_bases
CCCAGCTCCACTTATTTTAGAGGAGTAGGTTAATGATTTAATTATGATTATATTTATTGACAAATGAGTTTGAAACTAGA
TCGCCATTCTTCATACTAGG

Product: Sec-independent protein translocase TatD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MGSSKINYKSQMQLIDTHVHINFDIFNSDLEKIRKRWEEAGVVHLVHSCVEPEEFLSIKAIADRFPELSYAVGLHPLDAH
KWTSATANQIKNWGISDPRVVAIGETGLDFYKADNQEQQKFVFKQQLTIAQELNKPLIIHCRDAANSMAEILYDFQENHR
PVTGVMHCWGGTPEETKMFLDIGFYISFSGIVTFKNATQIQESAKIVPDDRLLIETDCPFLAPVPKRGKRNEPAYVKYVA
KKVAELRGITLENLAAQTSKNACELFGFSIHFQ

Sequences:

>Translated_273_residues
MGSSKINYKSQMQLIDTHVHINFDIFNSDLEKIRKRWEEAGVVHLVHSCVEPEEFLSIKAIADRFPELSYAVGLHPLDAH
KWTSATANQIKNWGISDPRVVAIGETGLDFYKADNQEQQKFVFKQQLTIAQELNKPLIIHCRDAANSMAEILYDFQENHR
PVTGVMHCWGGTPEETKMFLDIGFYISFSGIVTFKNATQIQESAKIVPDDRLLIETDCPFLAPVPKRGKRNEPAYVKYVA
KKVAELRGITLENLAAQTSKNACELFGFSIHFQ
>Mature_272_residues
GSSKINYKSQMQLIDTHVHINFDIFNSDLEKIRKRWEEAGVVHLVHSCVEPEEFLSIKAIADRFPELSYAVGLHPLDAHK
WTSATANQIKNWGISDPRVVAIGETGLDFYKADNQEQQKFVFKQQLTIAQELNKPLIIHCRDAANSMAEILYDFQENHRP
VTGVMHCWGGTPEETKMFLDIGFYISFSGIVTFKNATQIQESAKIVPDDRLLIETDCPFLAPVPKRGKRNEPAYVKYVAK
KVAELRGITLENLAAQTSKNACELFGFSIHFQ

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=266, Percent_Identity=27.0676691729323, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI110349734, Length=266, Percent_Identity=26.6917293233083, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI226061853, Length=271, Percent_Identity=26.1992619926199, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI225903424, Length=277, Percent_Identity=25.9927797833935, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI226061614, Length=259, Percent_Identity=26.2548262548263, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI14042943, Length=193, Percent_Identity=29.5336787564767, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI225903439, Length=193, Percent_Identity=29.5336787564767, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI226061595, Length=228, Percent_Identity=25, Blast_Score=69, Evalue=6e-12,
Organism=Escherichia coli, GI1787342, Length=266, Percent_Identity=37.218045112782, Blast_Score=175, Evalue=2e-45,
Organism=Escherichia coli, GI48994985, Length=262, Percent_Identity=32.4427480916031, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI87082439, Length=256, Percent_Identity=30.078125, Blast_Score=129, Evalue=3e-31,
Organism=Caenorhabditis elegans, GI17559024, Length=282, Percent_Identity=29.0780141843972, Blast_Score=119, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI71980746, Length=266, Percent_Identity=27.8195488721804, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17565396, Length=217, Percent_Identity=27.6497695852535, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17543026, Length=223, Percent_Identity=27.8026905829596, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24648690, Length=289, Percent_Identity=31.4878892733564, Blast_Score=108, Evalue=5e-24,
Organism=Drosophila melanogaster, GI221330018, Length=247, Percent_Identity=28.3400809716599, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24586117, Length=247, Percent_Identity=28.3400809716599, Blast_Score=82, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 30986; Mature: 30855

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSSKINYKSQMQLIDTHVHINFDIFNSDLEKIRKRWEEAGVVHLVHSCVEPEEFLSIKA
CCCCCCCHHHHHEEEEEEEEEEEEEECHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHH
IADRFPELSYAVGLHPLDAHKWTSATANQIKNWGISDPRVVAIGETGLDFYKADNQEQQK
HHHHCCCCCHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHCCCCHHHHH
FVFKQQLTIAQELNKPLIIHCRDAANSMAEILYDFQENHRPVTGVMHCWGGTPEETKMFL
HHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCEEHEEECCCCCHHCEEEE
DIGFYISFSGIVTFKNATQIQESAKIVPDDRLLIETDCPFLAPVPKRGKRNEPAYVKYVA
EEEEEEEEEEEEEECCHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHH
KKVAELRGITLENLAAQTSKNACELFGFSIHFQ
HHHHHHHCCHHHHHHHHCCCCCCHHEEEEEEEC
>Mature Secondary Structure 
GSSKINYKSQMQLIDTHVHINFDIFNSDLEKIRKRWEEAGVVHLVHSCVEPEEFLSIKA
CCCCCCHHHHHEEEEEEEEEEEEEECHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHH
IADRFPELSYAVGLHPLDAHKWTSATANQIKNWGISDPRVVAIGETGLDFYKADNQEQQK
HHHHCCCCCHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHCCCCHHHHH
FVFKQQLTIAQELNKPLIIHCRDAANSMAEILYDFQENHRPVTGVMHCWGGTPEETKMFL
HHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCEEHEEECCCCCHHCEEEE
DIGFYISFSGIVTFKNATQIQESAKIVPDDRLLIETDCPFLAPVPKRGKRNEPAYVKYVA
EEEEEEEEEEEEEECCHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHH
KKVAELRGITLENLAAQTSKNACELFGFSIHFQ
HHHHHHHCCHHHHHHHHCCCCCCHHEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]