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The map label for this gene is rpoC1

Identifier: 113476514

GI number: 113476514

Start: 4564109

End: 4566127

Strand: Reverse

Name: rpoC1

Synonym: Tery_2938

Alternate gene names: 113476514

Gene position: 4566127-4564109 (Counterclockwise)

Preceding gene: 113476515

Following gene: 113476513

Centisome position: 58.92

GC content: 39.18

Gene sequence:

>2019_bases
ATGCCAAAACTTGAACAAAGATTCGATTATGTGAAAATTGGGTTAGCTTCTCCAGACAGAATTCGTGGATGGGGAGAAAG
AACTCTGCCAAATGGTACTGTGGTAGGAGAAGTAACTAAACCAGAAACTATCAATTACCGGACTCTAAAACCAGAAATGG
ATGGGTTATTTTGCGAACGTATTTTTGGTCCGGCGAAAGACTGGGAATGTCATTGTGGAAAATATAAGCGAGTCCGACAT
CGGGGAATTGTTTGTGAAAGATGTGGAGTGGAAGTAACTGAGTCACGGGTGCGTCGTCACCGCATGGGACATATTAAGTT
AGCAGCACCAGTAACTCATGTTTGGTACCTCAAAGGTATTCCGAGTTACATGGCAATTTTATTAGATATGCCATTGCGGG
ATGTGGAGCAAATTGTTTACTTCAATGCTTATGTGGTATTGGAACCAGGAAATCACGAAAGTTTAAGTTATAAACAACTG
TTAAGTGAAGATGTTTGGTTAGAAATTGAAGACCAAATTTATAGTGAAGATTCTGAAATAGTAGGGGTTGATGTTGGTAT
TGGTGCTGAGGCTTTGCAGGTTTTGTTAGCAAATCTGGATCTAGAAGTAGAAGCGGAAAAACTACGGGAAGAAATTGCTA
ATTCTAAAGGGCAAAAACGAGCGAAGTTAATCAAGCGTTTACGGGTAATTGACAACTTTATTGCTACAGGTTCAAGACCA
GAATGGATGGTTTTGGATGCAATTCCTGTTATTCCTCCAGACCTACGTCCGATGGTACAGTTGGATGGGGGTAGGTTTGC
CACTAGTGATTTGAACGATCTTTACCGACGAGTAATTAATAGAAATAATCGTTTGGCGAGGTTACAGGAAATATTGGCTC
CAGAGATTATCATCCGCAATGAAAAACGAATGTTGCAAGAAGCAGTTGATGCTTTGATTGATAATGGTCGTAGGGGTAGA
ACTGTGGTAGGTGCAAATAACAGGCCTCTAAAATCTTTGAGCGATATTATTGAAGGAAAACAGGGTCGTTTTCGGCAAAA
CTTGTTAGGTAAACGGGTTGATTATTCAGGGAGATCCGTAATTGTTGTTGGACCTAAGTTGGCTATTAATCAATGTGGTT
TACCACGAGAAATGGCAATTGAGTTGTTTCAACCATTTGTGATTCATCGGTTAATTCGTCAGGGATTAGTGAATAATATT
AAGGCTGCCAAAAAACTAATTCAAAAAGGAGACCCCAACGTCTGGGATGTACTAGAAGAAGTTATAGACGGCCATCCAGT
AATGTTAAATCGCGCTCCAACTTTGCATAGATTAGGGATTCAAGCTTTTGAACCTATTTTAGTCGAAGGTAGAGCAATTC
AGCTACATCCTTTAGTATGTCCAGCATTTAATGCTGATTTTGATGGAGACCAAATGGCGGTTCATGTGCCACTGTCTTTG
GAGTCGCAAGCGGAGGCTAGGTTATTGATGTTGGCATCGAATAATGTTTTGTCTCCGGCAACTGGTCGCCCAATTATTAC
GCCTTCTCAAGATATGGTGTTGGGTTGTTATTATCTAACGGCAGAAAACCATAAACTCCAAGGTAGTAAAGCACTTTATT
TTGCTAACCCTGATGATGTAATTTTAGCTTATCAACAAGATAAGATAGATTTGCATACTTATGTTTATTTGAGGTTAGCT
CCTGATGTGGAGATTGAAACTGATAAACCAGAAGAAATACCTCCTGATATACAACAAATATCTGATGAACTAGTGGTTCA
TACTTATTGGATGCCATTGGATAGTAAAGTATTACCTAATACTTTAGGAGAGTTGAAATCAGAGCAAAAGTGCGAAAATG
GGGATTTGGTGAAGGCTTATAATCTTTATAGAATCCATTATAGTCAAGAGGGAGAGATTAAGAAAGTTTATATTAAATCT
CGCCAAGTTCGGCAGAGTAATGGATTAGTGACTACACAGTTTGTTGTGACAACGCCTGGTCGAATAATTATCAATCAAAC
AATTCAAAGTGTGCTTTAG

Upstream 100 bases:

>100_bases
ACAAACCTCAGTATTTCAAGCCTCTAGCCTTAGCTGTCGGTAATATTAATTAAACTCTGACGCAGGAGGCTAACTGATAA
CTGATACATGAATAACTGAA

Downstream 100 bases:

>100_bases
TTCATGGCAGAACTTACAGACCTAAACAGGAAACCGAAACCGGGTGCACTGTATGGCCTGATTTTTGTAACTATGCGAAA
TTTCCTTGATTAACCTGGTT

Product: DNA-directed RNA polymerase subunit gamma

Products: NA

Alternate protein names: RNAP subunit gamma; RNA polymerase subunit gamma; Transcriptase subunit gamma

Number of amino acids: Translated: 672; Mature: 671

Protein sequence:

>672_residues
MPKLEQRFDYVKIGLASPDRIRGWGERTLPNGTVVGEVTKPETINYRTLKPEMDGLFCERIFGPAKDWECHCGKYKRVRH
RGIVCERCGVEVTESRVRRHRMGHIKLAAPVTHVWYLKGIPSYMAILLDMPLRDVEQIVYFNAYVVLEPGNHESLSYKQL
LSEDVWLEIEDQIYSEDSEIVGVDVGIGAEALQVLLANLDLEVEAEKLREEIANSKGQKRAKLIKRLRVIDNFIATGSRP
EWMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIIRNEKRMLQEAVDALIDNGRRGR
TVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPKLAINQCGLPREMAIELFQPFVIHRLIRQGLVNNI
KAAKKLIQKGDPNVWDVLEEVIDGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLSL
ESQAEARLLMLASNNVLSPATGRPIITPSQDMVLGCYYLTAENHKLQGSKALYFANPDDVILAYQQDKIDLHTYVYLRLA
PDVEIETDKPEEIPPDIQQISDELVVHTYWMPLDSKVLPNTLGELKSEQKCENGDLVKAYNLYRIHYSQEGEIKKVYIKS
RQVRQSNGLVTTQFVVTTPGRIIINQTIQSVL

Sequences:

>Translated_672_residues
MPKLEQRFDYVKIGLASPDRIRGWGERTLPNGTVVGEVTKPETINYRTLKPEMDGLFCERIFGPAKDWECHCGKYKRVRH
RGIVCERCGVEVTESRVRRHRMGHIKLAAPVTHVWYLKGIPSYMAILLDMPLRDVEQIVYFNAYVVLEPGNHESLSYKQL
LSEDVWLEIEDQIYSEDSEIVGVDVGIGAEALQVLLANLDLEVEAEKLREEIANSKGQKRAKLIKRLRVIDNFIATGSRP
EWMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIIRNEKRMLQEAVDALIDNGRRGR
TVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPKLAINQCGLPREMAIELFQPFVIHRLIRQGLVNNI
KAAKKLIQKGDPNVWDVLEEVIDGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLSL
ESQAEARLLMLASNNVLSPATGRPIITPSQDMVLGCYYLTAENHKLQGSKALYFANPDDVILAYQQDKIDLHTYVYLRLA
PDVEIETDKPEEIPPDIQQISDELVVHTYWMPLDSKVLPNTLGELKSEQKCENGDLVKAYNLYRIHYSQEGEIKKVYIKS
RQVRQSNGLVTTQFVVTTPGRIIINQTIQSVL
>Mature_671_residues
PKLEQRFDYVKIGLASPDRIRGWGERTLPNGTVVGEVTKPETINYRTLKPEMDGLFCERIFGPAKDWECHCGKYKRVRHR
GIVCERCGVEVTESRVRRHRMGHIKLAAPVTHVWYLKGIPSYMAILLDMPLRDVEQIVYFNAYVVLEPGNHESLSYKQLL
SEDVWLEIEDQIYSEDSEIVGVDVGIGAEALQVLLANLDLEVEAEKLREEIANSKGQKRAKLIKRLRVIDNFIATGSRPE
WMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIIRNEKRMLQEAVDALIDNGRRGRT
VVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPKLAINQCGLPREMAIELFQPFVIHRLIRQGLVNNIK
AAKKLIQKGDPNVWDVLEEVIDGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLSLE
SQAEARLLMLASNNVLSPATGRPIITPSQDMVLGCYYLTAENHKLQGSKALYFANPDDVILAYQQDKIDLHTYVYLRLAP
DVEIETDKPEEIPPDIQQISDELVVHTYWMPLDSKVLPNTLGELKSEQKCENGDLVKAYNLYRIHYSQEGEIKKVYIKSR
QVRQSNGLVTTQFVVTTPGRIIINQTIQSVL

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

COG id: COG0086

COG function: function code K; DNA-directed RNA polymerase, beta' subunit/160 kD subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase beta' chain family. RpoC1 subfamily

Homologues:

Organism=Homo sapiens, GI4505939, Length=560, Percent_Identity=26.6071428571429, Blast_Score=166, Evalue=9e-41,
Organism=Homo sapiens, GI39725938, Length=341, Percent_Identity=29.9120234604106, Blast_Score=129, Evalue=7e-30,
Organism=Homo sapiens, GI103471997, Length=229, Percent_Identity=32.7510917030568, Blast_Score=102, Evalue=2e-21,
Organism=Escherichia coli, GI2367335, Length=569, Percent_Identity=59.7539543057997, Blast_Score=726, Evalue=0.0,
Organism=Caenorhabditis elegans, GI71987878, Length=309, Percent_Identity=31.7152103559871, Blast_Score=152, Evalue=5e-37,
Organism=Caenorhabditis elegans, GI25145495, Length=337, Percent_Identity=30.5637982195846, Blast_Score=147, Evalue=2e-35,
Organism=Saccharomyces cerevisiae, GI6320061, Length=561, Percent_Identity=26.0249554367201, Blast_Score=149, Evalue=2e-36,
Organism=Saccharomyces cerevisiae, GI6324690, Length=378, Percent_Identity=30.952380952381, Blast_Score=144, Evalue=5e-35,
Organism=Drosophila melanogaster, GI17530899, Length=561, Percent_Identity=26.7379679144385, Blast_Score=157, Evalue=2e-38,
Organism=Drosophila melanogaster, GI281360912, Length=529, Percent_Identity=24.7637051039698, Blast_Score=127, Evalue=2e-29,
Organism=Drosophila melanogaster, GI17647875, Length=337, Percent_Identity=27.5964391691395, Blast_Score=106, Evalue=7e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOC1_TRIEI (Q110H2)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_722575.1
- ProteinModelPortal:   Q110H2
- SMR:   Q110H2
- STRING:   Q110H2
- GeneID:   4245280
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_2938
- NMPDR:   fig|203124.1.peg.5949
- eggNOG:   COG0086
- HOGENOM:   HBG285548
- OMA:   HVWYLKG
- ProtClustDB:   PRK02625
- BioCyc:   TERY203124:TERY_2938-MONOMER
- HAMAP:   MF_01323
- InterPro:   IPR000722
- InterPro:   IPR006592
- InterPro:   IPR007080
- InterPro:   IPR007066
- InterPro:   IPR012755
- SMART:   SM00663
- TIGRFAMs:   TIGR02387

Pfam domain/function: PF04997 RNA_pol_Rpb1_1; PF00623 RNA_pol_Rpb1_2; PF04983 RNA_pol_Rpb1_3

EC number: =2.7.7.6

Molecular weight: Translated: 76186; Mature: 76055

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKLEQRFDYVKIGLASPDRIRGWGERTLPNGTVVGEVTKPETINYRTLKPEMDGLFCER
CCCHHHHCCEEEEECCCCHHHCCCCCCCCCCCCEEEECCCCCCCCEEEECCCCCCHHHHH
IFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGHIKLAAPVTHVWYLKGI
HCCCCCCCCCCCCHHHHHHHCCCEEHHCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHCC
PSYMAILLDMPLRDVEQIVYFNAYVVLEPGNHESLSYKQLLSEDVWLEIEDQIYSEDSEI
HHHHHHHHCCCHHHHHHEEEEEEEEEEECCCCCCCHHHHHHCCCCEEEECHHHCCCCCCE
VGVDVGIGAEALQVLLANLDLEVEAEKLREEIANSKGQKRAKLIKRLRVIDNFIATGSRP
EEEECCCCHHHHHHHHHHCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
EWMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIIRN
CEEEEECCCCCCCCCCCEEEECCCEEECCHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEC
EKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSV
HHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCCEE
IVVGPKLAINQCGLPREMAIELFQPFVIHRLIRQGLVNNIKAAKKLIQKGDPNVWDVLEE
EEECCCEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
VIDGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLSL
HHCCCCEEEECCCCHHHHCHHHHCCEEECCCEEEEEEEECCCCCCCCCCCEEEEEEECCC
ESQAEARLLMLASNNVLSPATGRPIITPSQDMVLGCYYLTAENHKLQGSKALYFANPDDV
CCCCCEEEEEEECCCEECCCCCCCEECCCCCEEEEEEEEEECCCEECCCEEEEEECCCCE
ILAYQQDKIDLHTYVYLRLAPDVEIETDKPEEIPPDIQQISDELVVHTYWMPLDSKVLPN
EEEEECCCEEEEEEEEEEECCCCEECCCCCCCCCCHHHHHHHHEEEEEEECCCCCCCCHH
TLGELKSEQKCENGDLVKAYNLYRIHYSQEGEIKKVYIKSRQVRQSNGLVTTQFVVTTPG
HHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCEEEEEEHHHHHHHCCCEEEEEEEEECCC
RIIINQTIQSVL
EEEEHHHHHHHC
>Mature Secondary Structure 
PKLEQRFDYVKIGLASPDRIRGWGERTLPNGTVVGEVTKPETINYRTLKPEMDGLFCER
CCHHHHCCEEEEECCCCHHHCCCCCCCCCCCCEEEECCCCCCCCEEEECCCCCCHHHHH
IFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGHIKLAAPVTHVWYLKGI
HCCCCCCCCCCCCHHHHHHHCCCEEHHCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHCC
PSYMAILLDMPLRDVEQIVYFNAYVVLEPGNHESLSYKQLLSEDVWLEIEDQIYSEDSEI
HHHHHHHHCCCHHHHHHEEEEEEEEEEECCCCCCCHHHHHHCCCCEEEECHHHCCCCCCE
VGVDVGIGAEALQVLLANLDLEVEAEKLREEIANSKGQKRAKLIKRLRVIDNFIATGSRP
EEEECCCCHHHHHHHHHHCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
EWMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIIRN
CEEEEECCCCCCCCCCCEEEECCCEEECCHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEC
EKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSV
HHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCCEE
IVVGPKLAINQCGLPREMAIELFQPFVIHRLIRQGLVNNIKAAKKLIQKGDPNVWDVLEE
EEECCCEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
VIDGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLSL
HHCCCCEEEECCCCHHHHCHHHHCCEEECCCEEEEEEEECCCCCCCCCCCEEEEEEECCC
ESQAEARLLMLASNNVLSPATGRPIITPSQDMVLGCYYLTAENHKLQGSKALYFANPDDV
CCCCCEEEEEEECCCEECCCCCCCEECCCCCEEEEEEEEEECCCEECCCEEEEEECCCCE
ILAYQQDKIDLHTYVYLRLAPDVEIETDKPEEIPPDIQQISDELVVHTYWMPLDSKVLPN
EEEEECCCEEEEEEEEEEECCCCEECCCCCCCCCCHHHHHHHHEEEEEEECCCCCCCCHH
TLGELKSEQKCENGDLVKAYNLYRIHYSQEGEIKKVYIKSRQVRQSNGLVTTQFVVTTPG
HHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCEEEEEEHHHHHHHCCCEEEEEEEEECCC
RIIINQTIQSVL
EEEEHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA