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The map label for this gene is xylR [H]

Identifier: 113476460

GI number: 113476460

Start: 4478487

End: 4479398

Strand: Reverse

Name: xylR [H]

Synonym: Tery_2875

Alternate gene names: 113476460

Gene position: 4479398-4478487 (Counterclockwise)

Preceding gene: 113476461

Following gene: 113476459

Centisome position: 57.8

GC content: 37.39

Gene sequence:

>912_bases
ATGAACTCTCTAGTTATAGGCATTGATATAGGAGGAACATCTATCAAGTTGGGATGTTTCGGTAGGGATGGAGTATGTCA
TCAATCTTTAACTGTTCCAACTCCTCGACCTGCTACTCCAAAAGCAGTTATTGATCTAATAAAAGAGGTAATATCTATGA
TGATAAAAGAACCTCAAATATACAACTTAGGACCTATTCAAGGAATAGGTATTGGAGTACCAGGTCCTGTTGATGCTGAA
GGTAAAACTTCTATCATAGCAATTAATTTAACAGATTGGCAAGATGTTCCTCTCGCTAAATTGTTAGAGGAAAAAACTGG
TTTACCAGTAGTTATAGCTAATGATGCTAACTGTGCTGGTTTAGGAGAAGCTTGGTTAGGGGCAGGTAGTCAGTATAAAA
ATCTGATTATGCTTACCCTGGGTACTGGTGTCGGAGGAGCAATTATATTAAATAGCCAATTATTTGTGGGTCATCAAGGT
GCCGCTGGAGAGTTAGGCTTAATAACTTTAAACCTCGATGGACCTAAATGCAATAGTGGCAATAATGGTTCTTTGGAACA
ATATATTTCTGTTCAAGCAGTTCGTCGAGAGACAGGAAAAGAACCTTTAGAATTAGCCAATTTAGCTTTGGCTGGAGATA
AATTTGCTCTAGAATTTTGGCAAAATTACGGACGACTTTTAGGAGCTGGGTTAGCAAGTTTAATTTATATTTTAACTCCA
GAAGCAGTGATTATTGGTGGTGGAATAAGTGCTGCAGCAAAACTTTTTTTACCTGCGACTAAGGCAGAAGTTAAGCGACG
AGTTCTTCTGACTTCTTCTTTAAAGTTACAATTATTAATTGCTAAATTAGGTAATCAAGCTGGTGTTATTGGAGCTGCTA
AGTTAGCTTGGACTAAGTTTTCAGATCAATGA

Upstream 100 bases:

>100_bases
AATTAAGACTATTCAAGGCGAATATATGGTAGTTCGTCCTTCAGCTATAATTGCCATTCGGGTTGAACCAATATTTAATT
CTAGTATTGAAAGATATTAA

Downstream 100 bases:

>100_bases
TTTGAGATTTTTGAATTGGAAGGTAATAGGTAATAGTTGGTGGAGGAAGGAAATTTTGATAATAACTCAATACTGTTTAG
ACAAAAGATTACTATAAATC

Product: ROK domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MNSLVIGIDIGGTSIKLGCFGRDGVCHQSLTVPTPRPATPKAVIDLIKEVISMMIKEPQIYNLGPIQGIGIGVPGPVDAE
GKTSIIAINLTDWQDVPLAKLLEEKTGLPVVIANDANCAGLGEAWLGAGSQYKNLIMLTLGTGVGGAIILNSQLFVGHQG
AAGELGLITLNLDGPKCNSGNNGSLEQYISVQAVRRETGKEPLELANLALAGDKFALEFWQNYGRLLGAGLASLIYILTP
EAVIIGGGISAAAKLFLPATKAEVKRRVLLTSSLKLQLLIAKLGNQAGVIGAAKLAWTKFSDQ

Sequences:

>Translated_303_residues
MNSLVIGIDIGGTSIKLGCFGRDGVCHQSLTVPTPRPATPKAVIDLIKEVISMMIKEPQIYNLGPIQGIGIGVPGPVDAE
GKTSIIAINLTDWQDVPLAKLLEEKTGLPVVIANDANCAGLGEAWLGAGSQYKNLIMLTLGTGVGGAIILNSQLFVGHQG
AAGELGLITLNLDGPKCNSGNNGSLEQYISVQAVRRETGKEPLELANLALAGDKFALEFWQNYGRLLGAGLASLIYILTP
EAVIIGGGISAAAKLFLPATKAEVKRRVLLTSSLKLQLLIAKLGNQAGVIGAAKLAWTKFSDQ
>Mature_303_residues
MNSLVIGIDIGGTSIKLGCFGRDGVCHQSLTVPTPRPATPKAVIDLIKEVISMMIKEPQIYNLGPIQGIGIGVPGPVDAE
GKTSIIAINLTDWQDVPLAKLLEEKTGLPVVIANDANCAGLGEAWLGAGSQYKNLIMLTLGTGVGGAIILNSQLFVGHQG
AAGELGLITLNLDGPKCNSGNNGSLEQYISVQAVRRETGKEPLELANLALAGDKFALEFWQNYGRLLGAGLASLIYILTP
EAVIIGGGISAAAKLFLPATKAEVKRRVLLTSSLKLQLLIAKLGNQAGVIGAAKLAWTKFSDQ

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Homo sapiens, GI298566325, Length=267, Percent_Identity=29.2134831460674, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI298566315, Length=267, Percent_Identity=29.2134831460674, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI190014632, Length=267, Percent_Identity=29.2134831460674, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI4885285, Length=267, Percent_Identity=29.2134831460674, Blast_Score=87, Evalue=2e-17,
Organism=Escherichia coli, GI1787363, Length=315, Percent_Identity=31.4285714285714, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI87081733, Length=308, Percent_Identity=27.5974025974026, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787878, Length=263, Percent_Identity=25.4752851711027, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1786891, Length=239, Percent_Identity=26.7782426778243, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1790522, Length=318, Percent_Identity=28.3018867924528, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87082230, Length=250, Percent_Identity=26.4, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87082127, Length=102, Percent_Identity=31.3725490196078, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 31612; Mature: 31612

Theoretical pI: Translated: 7.93; Mature: 7.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSLVIGIDIGGTSIKLGCFGRDGVCHQSLTVPTPRPATPKAVIDLIKEVISMMIKEPQI
CCCEEEEEEECCCEEEEEECCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCE
YNLGPIQGIGIGVPGPVDAEGKTSIIAINLTDWQDVPLAKLLEEKTGLPVVIANDANCAG
ECCCCCCEECCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCEEEECCCCCCC
LGEAWLGAGSQYKNLIMLTLGTGVGGAIILNSQLFVGHQGAAGELGLITLNLDGPKCNSG
CCHHHHCCCCCCCEEEEEEECCCCCCEEEEECEEEEECCCCCCCEEEEEEECCCCCCCCC
NNGSLEQYISVQAVRRETGKEPLELANLALAGDKFALEFWQNYGRLLGAGLASLIYILTP
CCCCHHHHHHHHHHHHHCCCCHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
EAVIIGGGISAAAKLFLPATKAEVKRRVLLTSSLKLQLLIAKLGNQAGVIGAAKLAWTKF
CEEEEECCHHHHHHEECCCCHHHHHHEEEEECCCEEEEEEEHHCCCCCEEEEEEEEEEEC
SDQ
CCC
>Mature Secondary Structure
MNSLVIGIDIGGTSIKLGCFGRDGVCHQSLTVPTPRPATPKAVIDLIKEVISMMIKEPQI
CCCEEEEEEECCCEEEEEECCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCE
YNLGPIQGIGIGVPGPVDAEGKTSIIAINLTDWQDVPLAKLLEEKTGLPVVIANDANCAG
ECCCCCCEECCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCEEEECCCCCCC
LGEAWLGAGSQYKNLIMLTLGTGVGGAIILNSQLFVGHQGAAGELGLITLNLDGPKCNSG
CCHHHHCCCCCCCEEEEEEECCCCCCEEEEECEEEEECCCCCCCEEEEEEECCCCCCCCC
NNGSLEQYISVQAVRRETGKEPLELANLALAGDKFALEFWQNYGRLLGAGLASLIYILTP
CCCCHHHHHHHHHHHHHCCCCHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
EAVIIGGGISAAAKLFLPATKAEVKRRVLLTSSLKLQLLIAKLGNQAGVIGAAKLAWTKF
CEEEEECCHHHHHHEECCCCHHHHHHEEEEECCCEEEEEEEHHCCCCCEEEEEEEEEEEC
SDQ
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]