| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476450
Identifier: 113476450
GI number: 113476450
Start: 4468895
End: 4469809
Strand: Reverse
Name: 113476450
Synonym: Tery_2865
Alternate gene names: NA
Gene position: 4469809-4468895 (Counterclockwise)
Preceding gene: 113476451
Following gene: 113476448
Centisome position: 57.67
GC content: 39.23
Gene sequence:
>915_bases ATGTATATGGAAACTAAATCTTCTACTATAGTGCCTACCCAAGATAATATTGATTCTGCAGAGTTGTCTGAAAATAGAAG AGATTTTCTAGTCAAGTTCTGGGGAGTTCGGGGTAGTGTTCCGACTCCTGGAAAAGATACTGTTCGATATGGAGGAAATA CTTCCTGCATAGAAATGCAAATTGCTAATAATCGTTTGATATTTGATGGAGGTACTGGAATACGAGAATTAGGGAAAGAA CTGATGCAGGAAATGCCAATTGAAGCTTATGTCTTTTTTACTCATTATCATTGGGATCACATTCAAGGTTTCCCATTGTT CACTCCGGCTTTTACTAGAGGAAATTGTTTTCACATCTATGGGGCAATTCCTCCTAAAGGGGAGTCAATGAAAAAGCATT TTATGGATAGAGTTTTACATAATAACTCTCCTATTCCTCTCAAGGATATGCAGGCGGACTTGCGATTTTATGAACTTGAG CATGGGCAAAAAATGATGCTCCATAATATAGAGATTGAAACGGGTTCTCTGAATCATCCTAATAAGGCGATAGGATACAG GGTGACATGGAATGGAAGGAGTGCGGTTTATTGTTCTGATACAGAGCATTTTCCTGAAGGTTTGGATGAAAACGTAGTCT ATTTAGCTCGAGGTGCTGATGTTCTAATTTATGATGCTATGTACACTGATGATGAGTATCATAACCCCAAGTCCTCTAAA GTGGGTTGGGGACATTCTACTTGGCAGGAAGCAATCAAAGTTGCTAAAGCTGCCGGAGTAAAGCAACTAGTAATTTTTCA CCATGAACCAGGTCATAGTGATGATTTTCTGGATGGGATGGCAGAAAAAGTTAAAGCAGCTTTTCCTATGGCAGTTATGG CCATAGAAGGTTTAGTGCTACCAGTAGGAATTTGA
Upstream 100 bases:
>100_bases TTACCTAGGGCTGTACCTATGGTAGAAGCAATGGTAGCTATAGTTCTATGTGATCATTTATTGCGTCATTATGGACAATG TAATACCTTAAAGTCAGAAA
Downstream 100 bases:
>100_bases TATGAGAAATTACTTTAATACAAATTTAATAATTTATTGCGATATTCTTTGCTTATCGGATGATTATCTCCTAAGATGTG AAATATTGCTAGCATTGCTT
Product: beta-lactamase-like protein
Products: NA
Alternate protein names: Beta-Lactamase Domain Protein; Metal-Dependent Hydrolase; Metallo-Beta-Lactamase Family Protein; Beta-Lactamase Superfamily Hydrolase; Beta-Lactamase-Like; Beta-Lactamase-Like Protein; Metallo-Beta-Lactamase Superfamily Protein; Metal Dependant Beta Lactamase Protein; Metallo-Beta-Lactamase Superfamily; Phytochrome Sensor Protein; Metal-Dependent Hydrolase Of Beta-Lactamase Superfamily I; Metallo-Beta-Lactamase; GAF Domain/HD Domain Protein; Seceted Metal-Dependent Hydrolase; Beta-Lactamase Family Hydrolase; Conserved Beta-Lactamase Domain Protein; RNAse Z; Sulphohydrolase/Glycosulfatase Zn-Dependent Hydrolase
Number of amino acids: Translated: 304; Mature: 304
Protein sequence:
>304_residues MYMETKSSTIVPTQDNIDSAELSENRRDFLVKFWGVRGSVPTPGKDTVRYGGNTSCIEMQIANNRLIFDGGTGIRELGKE LMQEMPIEAYVFFTHYHWDHIQGFPLFTPAFTRGNCFHIYGAIPPKGESMKKHFMDRVLHNNSPIPLKDMQADLRFYELE HGQKMMLHNIEIETGSLNHPNKAIGYRVTWNGRSAVYCSDTEHFPEGLDENVVYLARGADVLIYDAMYTDDEYHNPKSSK VGWGHSTWQEAIKVAKAAGVKQLVIFHHEPGHSDDFLDGMAEKVKAAFPMAVMAIEGLVLPVGI
Sequences:
>Translated_304_residues MYMETKSSTIVPTQDNIDSAELSENRRDFLVKFWGVRGSVPTPGKDTVRYGGNTSCIEMQIANNRLIFDGGTGIRELGKE LMQEMPIEAYVFFTHYHWDHIQGFPLFTPAFTRGNCFHIYGAIPPKGESMKKHFMDRVLHNNSPIPLKDMQADLRFYELE HGQKMMLHNIEIETGSLNHPNKAIGYRVTWNGRSAVYCSDTEHFPEGLDENVVYLARGADVLIYDAMYTDDEYHNPKSSK VGWGHSTWQEAIKVAKAAGVKQLVIFHHEPGHSDDFLDGMAEKVKAAFPMAVMAIEGLVLPVGI >Mature_304_residues MYMETKSSTIVPTQDNIDSAELSENRRDFLVKFWGVRGSVPTPGKDTVRYGGNTSCIEMQIANNRLIFDGGTGIRELGKE LMQEMPIEAYVFFTHYHWDHIQGFPLFTPAFTRGNCFHIYGAIPPKGESMKKHFMDRVLHNNSPIPLKDMQADLRFYELE HGQKMMLHNIEIETGSLNHPNKAIGYRVTWNGRSAVYCSDTEHFPEGLDENVVYLARGADVLIYDAMYTDDEYHNPKSSK VGWGHSTWQEAIKVAKAAGVKQLVIFHHEPGHSDDFLDGMAEKVKAAFPMAVMAIEGLVLPVGI
Specific function: Unknown
COG id: COG1235
COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily I
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34341; Mature: 34341
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYMETKSSTIVPTQDNIDSAELSENRRDFLVKFWGVRGSVPTPGKDTVRYGGNTSCIEMQ CCEECCCCEEECCCCCCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEECCCCEEEEEE IANNRLIFDGGTGIRELGKELMQEMPIEAYVFFTHYHWDHIQGFPLFTPAFTRGNCFHIY EECCEEEEECCCCHHHHHHHHHHHCCCEEEEEEEEEEHHHCCCCCCCCCCCCCCCEEEEE GAIPPKGESMKKHFMDRVLHNNSPIPLKDMQADLRFYELEHGQKMMLHNIEIETGSLNHP ECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCEEEEECCCCEEEEEEEEEECCCCCCC NKAIGYRVTWNGRSAVYCSDTEHFPEGLDENVVYLARGADVLIYDAMYTDDEYHNPKSSK CCCEEEEEEECCCEEEEECCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCC VGWGHSTWQEAIKVAKAAGVKQLVIFHHEPGHSDDFLDGMAEKVKAAFPMAVMAIEGLVL CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHCCEEE PVGI ECCC >Mature Secondary Structure MYMETKSSTIVPTQDNIDSAELSENRRDFLVKFWGVRGSVPTPGKDTVRYGGNTSCIEMQ CCEECCCCEEECCCCCCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEECCCCEEEEEE IANNRLIFDGGTGIRELGKELMQEMPIEAYVFFTHYHWDHIQGFPLFTPAFTRGNCFHIY EECCEEEEECCCCHHHHHHHHHHHCCCEEEEEEEEEEHHHCCCCCCCCCCCCCCCEEEEE GAIPPKGESMKKHFMDRVLHNNSPIPLKDMQADLRFYELEHGQKMMLHNIEIETGSLNHP ECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCEEEEECCCCEEEEEEEEEECCCCCCC NKAIGYRVTWNGRSAVYCSDTEHFPEGLDENVVYLARGADVLIYDAMYTDDEYHNPKSSK CCCEEEEEEECCCEEEEECCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCC VGWGHSTWQEAIKVAKAAGVKQLVIFHHEPGHSDDFLDGMAEKVKAAFPMAVMAIEGLVL CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHCCEEE PVGI ECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA