| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476395
Identifier: 113476395
GI number: 113476395
Start: 4352351
End: 4354093
Strand: Reverse
Name: 113476395
Synonym: Tery_2807
Alternate gene names: NA
Gene position: 4354093-4352351 (Counterclockwise)
Preceding gene: 113476403
Following gene: 113476394
Centisome position: 56.18
GC content: 35.0
Gene sequence:
>1743_bases ATGAAAATTATCAAAAGTACTTGGAGTTATTTATTTTGGCTTGGACCAATTTCAGCTATTATCGGTGTATCAGCAGGATT TGTGTCAGGAAATTGGGAACCTATACCATTAATATTGATAGGTATTTCCATAATAATAACTGGCTTATGGATTTTTTATC AAGCTTATTCTAGAGAACAAAACCCAAACATAACTTGGTGGAGTGGTCGGGCAACTGAAGCAGGTACAAATGCAATTTTT GCAACTATTTCAGTCCTGATAATTTTGGGGATAATTAACTTTCTAGCAGTTCGTTATCAAACAAGAATAGACCTGACTGA AAACCAAAAATTTACATTATCACCACAAACTATAGAAATACTAGAAAATCTCCAAAAGCCAGTCAAACTTTGGATATTTG ACCGAGGAGAAAATCCCCAATATACTCAGTTAATAGAAAATTATCAAAGACAAGGAAATGGTAAATTTATATTTGAGTTA GTAGACCCTCAAACACAACCAGGAAAAGCCAATCAATTTGGAGTAAAACAGTTAGGAGAAATTCATCTAGAAGTGGGGGA GAAAAAAGAAGTTATTATTAGTAAACAACTAGAGCTTCTAACAGAATCTAAACTCACAAATAGTATCGAAAAAATACTTG GTAGCCGAATTTTAAAAATCTACTTTATTCAAGGTCATGGGGAACGAGAATTAAAAGAAGGCCAAAAAGGTTTTTCTGAA GCTGTTAATGCTCTTGAAAGTAAGAATTACATAGTAGAATCTATCAATTTGGCAAGCATTTCTCAAGTACCAGAAGATGC AGATGTTGTAATTATTGCTGGTGCTCAAAGAAAATTTTTAGAAGCAGAAGTTATTGCTTTACAAGAGTATTTAGAAAAAG GTGGCGGTGTTTTGATAATGTTAGACCCAAGCACCGATCCAGGATTAAATAATTTATTTGAAGAGTGGGGTGTATTAGTT GACGATCGCCTAGCAATAGATGACCCCAAAATTGGTAGATTAGTCGGTCTTGACCCCTGGGTGGTATTAGTTACAATGTA TGGAGAACATCCTATTACCCAAGATTTTGGTAATGGCATTTCATTATATCCCTTTGCCCGACCCATAGAAACTGAGGCCA TAGATGGGATAAAGGAAAGTCCTATAATTTGGACTGGTAACCAAAGTTGGGCAGAAACAGATTTAAGGGGTGAGTTAAGA TTTAATGAAGGTCGCGATCGTATTGGACCATTATCTTTAGGTGTAGCTTTGACTCGTTCTTCTACTGGGGAAAAAAATCA GGAAACAGAATTAGAATTGACTCCTATTCCTTCACTTCCTGGTCAACCACCTAATGAACCTACTACAACTTATACTTCAG AATTAGAAGCAGAAAAAAAGACAACTTCAGCAGAGGTTATTTCCCCACTTCCTGGTCAACCACCAGATGAATTAGATTCT AGTAAAATAGAGGTAAAATTAGAAAATAAATTAGAAGAAGCACGTTTAATAGTATTAGGAAATTCTCAATTTGCTACCAA TGGTTGGTTTCAACAACAACTAAATGGAGACGTATTTCTTAATTCAATTTCTTGGTTAAGTAAACCAGAACAAGAAACAC TTTCTATTAGTCCGAAAAAAACTACAAATCGTCGTATTGCAATGAGTTTAGTAAAAGCCAGATTTTTAAGCTGGATGGCA ATTGTAATCTTGCCAATTTTAGCCTTGACAATTGGTGGAATAATTTGGTGGCAGCGACGATAA
Upstream 100 bases:
>100_bases ATCATTTATTGCAGAAATCTCTCAATCTATTTATAATATTGTTTCGATGTTATTCCTAATTTACTATTCAAGAGAATTTA GACATTGAAAAAAAGATAAT
Downstream 100 bases:
>100_bases AAAGTCAAAATTTAGCTCCCCCCTAATACCATTTATCATTATCAAAAACTTTTCTACTTGAGTATTGATTAGGGGTAGGG ACGTTGCGTGTTATGTCCCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 580; Mature: 580
Protein sequence:
>580_residues MKIIKSTWSYLFWLGPISAIIGVSAGFVSGNWEPIPLILIGISIIITGLWIFYQAYSREQNPNITWWSGRATEAGTNAIF ATISVLIILGIINFLAVRYQTRIDLTENQKFTLSPQTIEILENLQKPVKLWIFDRGENPQYTQLIENYQRQGNGKFIFEL VDPQTQPGKANQFGVKQLGEIHLEVGEKKEVIISKQLELLTESKLTNSIEKILGSRILKIYFIQGHGERELKEGQKGFSE AVNALESKNYIVESINLASISQVPEDADVVIIAGAQRKFLEAEVIALQEYLEKGGGVLIMLDPSTDPGLNNLFEEWGVLV DDRLAIDDPKIGRLVGLDPWVVLVTMYGEHPITQDFGNGISLYPFARPIETEAIDGIKESPIIWTGNQSWAETDLRGELR FNEGRDRIGPLSLGVALTRSSTGEKNQETELELTPIPSLPGQPPNEPTTTYTSELEAEKKTTSAEVISPLPGQPPDELDS SKIEVKLENKLEEARLIVLGNSQFATNGWFQQQLNGDVFLNSISWLSKPEQETLSISPKKTTNRRIAMSLVKARFLSWMA IVILPILALTIGGIIWWQRR
Sequences:
>Translated_580_residues MKIIKSTWSYLFWLGPISAIIGVSAGFVSGNWEPIPLILIGISIIITGLWIFYQAYSREQNPNITWWSGRATEAGTNAIF ATISVLIILGIINFLAVRYQTRIDLTENQKFTLSPQTIEILENLQKPVKLWIFDRGENPQYTQLIENYQRQGNGKFIFEL VDPQTQPGKANQFGVKQLGEIHLEVGEKKEVIISKQLELLTESKLTNSIEKILGSRILKIYFIQGHGERELKEGQKGFSE AVNALESKNYIVESINLASISQVPEDADVVIIAGAQRKFLEAEVIALQEYLEKGGGVLIMLDPSTDPGLNNLFEEWGVLV DDRLAIDDPKIGRLVGLDPWVVLVTMYGEHPITQDFGNGISLYPFARPIETEAIDGIKESPIIWTGNQSWAETDLRGELR FNEGRDRIGPLSLGVALTRSSTGEKNQETELELTPIPSLPGQPPNEPTTTYTSELEAEKKTTSAEVISPLPGQPPDELDS SKIEVKLENKLEEARLIVLGNSQFATNGWFQQQLNGDVFLNSISWLSKPEQETLSISPKKTTNRRIAMSLVKARFLSWMA IVILPILALTIGGIIWWQRR >Mature_580_residues MKIIKSTWSYLFWLGPISAIIGVSAGFVSGNWEPIPLILIGISIIITGLWIFYQAYSREQNPNITWWSGRATEAGTNAIF ATISVLIILGIINFLAVRYQTRIDLTENQKFTLSPQTIEILENLQKPVKLWIFDRGENPQYTQLIENYQRQGNGKFIFEL VDPQTQPGKANQFGVKQLGEIHLEVGEKKEVIISKQLELLTESKLTNSIEKILGSRILKIYFIQGHGERELKEGQKGFSE AVNALESKNYIVESINLASISQVPEDADVVIIAGAQRKFLEAEVIALQEYLEKGGGVLIMLDPSTDPGLNNLFEEWGVLV DDRLAIDDPKIGRLVGLDPWVVLVTMYGEHPITQDFGNGISLYPFARPIETEAIDGIKESPIIWTGNQSWAETDLRGELR FNEGRDRIGPLSLGVALTRSSTGEKNQETELELTPIPSLPGQPPNEPTTTYTSELEAEKKTTSAEVISPLPGQPPDELDS SKIEVKLENKLEEARLIVLGNSQFATNGWFQQQLNGDVFLNSISWLSKPEQETLSISPKKTTNRRIAMSLVKARFLSWMA IVILPILALTIGGIIWWQRR
Specific function: Unknown
COG id: COG3225
COG function: function code N; ABC-type uncharacterized transport system involved in gliding motility, auxiliary component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64880; Mature: 64880
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIIKSTWSYLFWLGPISAIIGVSAGFVSGNWEPIPLILIGISIIITGLWIFYQAYSREQ CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC NPNITWWSGRATEAGTNAIFATISVLIILGIINFLAVRYQTRIDLTENQKFTLSPQTIEI CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEECCHHHHH LENLQKPVKLWIFDRGENPQYTQLIENYQRQGNGKFIFELVDPQTQPGKANQFGVKQLGE HHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHH IHLEVGEKKEVIISKQLELLTESKLTNSIEKILGSRILKIYFIQGHGERELKEGQKGFSE EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCHHHHHHHHHHHHH AVNALESKNYIVESINLASISQVPEDADVVIIAGAQRKFLEAEVIALQEYLEKGGGVLIM HHHHHHCCCCEEEECCHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEE LDPSTDPGLNNLFEEWGVLVDDRLAIDDPKIGRLVGLDPWVVLVTMYGEHPITQDFGNGI ECCCCCCCHHHHHHHCCCEECCEEECCCCCCCEEECCCCCEEEEEECCCCCCCHHHCCCE SLYPFARPIETEAIDGIKESPIIWTGNQSWAETDLRGELRFNEGRDRIGPLSLGVALTRS EECCCCCCCCHHHHCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCEEECEEEECC STGEKNQETELELTPIPSLPGQPPNEPTTTYTSELEAEKKTTSAEVISPLPGQPPDELDS CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHCCCCCCCCCCCCC SKIEVKLENKLEEARLIVLGNSQFATNGWFQQQLNGDVFLNSISWLSKPEQETLSISPKK CEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHCCCCEEEECHHHHCCCCCHHEECCCCC TTNRRIAMSLVKARFLSWMAIVILPILALTIGGIIWWQRR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECC >Mature Secondary Structure MKIIKSTWSYLFWLGPISAIIGVSAGFVSGNWEPIPLILIGISIIITGLWIFYQAYSREQ CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC NPNITWWSGRATEAGTNAIFATISVLIILGIINFLAVRYQTRIDLTENQKFTLSPQTIEI CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEECCHHHHH LENLQKPVKLWIFDRGENPQYTQLIENYQRQGNGKFIFELVDPQTQPGKANQFGVKQLGE HHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHH IHLEVGEKKEVIISKQLELLTESKLTNSIEKILGSRILKIYFIQGHGERELKEGQKGFSE EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCHHHHHHHHHHHHH AVNALESKNYIVESINLASISQVPEDADVVIIAGAQRKFLEAEVIALQEYLEKGGGVLIM HHHHHHCCCCEEEECCHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEE LDPSTDPGLNNLFEEWGVLVDDRLAIDDPKIGRLVGLDPWVVLVTMYGEHPITQDFGNGI ECCCCCCCHHHHHHHCCCEECCEEECCCCCCCEEECCCCCEEEEEECCCCCCCHHHCCCE SLYPFARPIETEAIDGIKESPIIWTGNQSWAETDLRGELRFNEGRDRIGPLSLGVALTRS EECCCCCCCCHHHHCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCEEECEEEECC STGEKNQETELELTPIPSLPGQPPNEPTTTYTSELEAEKKTTSAEVISPLPGQPPDELDS CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHCCCCCCCCCCCCC SKIEVKLENKLEEARLIVLGNSQFATNGWFQQQLNGDVFLNSISWLSKPEQETLSISPKK CEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHCCCCEEEECHHHHCCCCCHHEECCCCC TTNRRIAMSLVKARFLSWMAIVILPILALTIGGIIWWQRR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA