Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113476395

Identifier: 113476395

GI number: 113476395

Start: 4352351

End: 4354093

Strand: Reverse

Name: 113476395

Synonym: Tery_2807

Alternate gene names: NA

Gene position: 4354093-4352351 (Counterclockwise)

Preceding gene: 113476403

Following gene: 113476394

Centisome position: 56.18

GC content: 35.0

Gene sequence:

>1743_bases
ATGAAAATTATCAAAAGTACTTGGAGTTATTTATTTTGGCTTGGACCAATTTCAGCTATTATCGGTGTATCAGCAGGATT
TGTGTCAGGAAATTGGGAACCTATACCATTAATATTGATAGGTATTTCCATAATAATAACTGGCTTATGGATTTTTTATC
AAGCTTATTCTAGAGAACAAAACCCAAACATAACTTGGTGGAGTGGTCGGGCAACTGAAGCAGGTACAAATGCAATTTTT
GCAACTATTTCAGTCCTGATAATTTTGGGGATAATTAACTTTCTAGCAGTTCGTTATCAAACAAGAATAGACCTGACTGA
AAACCAAAAATTTACATTATCACCACAAACTATAGAAATACTAGAAAATCTCCAAAAGCCAGTCAAACTTTGGATATTTG
ACCGAGGAGAAAATCCCCAATATACTCAGTTAATAGAAAATTATCAAAGACAAGGAAATGGTAAATTTATATTTGAGTTA
GTAGACCCTCAAACACAACCAGGAAAAGCCAATCAATTTGGAGTAAAACAGTTAGGAGAAATTCATCTAGAAGTGGGGGA
GAAAAAAGAAGTTATTATTAGTAAACAACTAGAGCTTCTAACAGAATCTAAACTCACAAATAGTATCGAAAAAATACTTG
GTAGCCGAATTTTAAAAATCTACTTTATTCAAGGTCATGGGGAACGAGAATTAAAAGAAGGCCAAAAAGGTTTTTCTGAA
GCTGTTAATGCTCTTGAAAGTAAGAATTACATAGTAGAATCTATCAATTTGGCAAGCATTTCTCAAGTACCAGAAGATGC
AGATGTTGTAATTATTGCTGGTGCTCAAAGAAAATTTTTAGAAGCAGAAGTTATTGCTTTACAAGAGTATTTAGAAAAAG
GTGGCGGTGTTTTGATAATGTTAGACCCAAGCACCGATCCAGGATTAAATAATTTATTTGAAGAGTGGGGTGTATTAGTT
GACGATCGCCTAGCAATAGATGACCCCAAAATTGGTAGATTAGTCGGTCTTGACCCCTGGGTGGTATTAGTTACAATGTA
TGGAGAACATCCTATTACCCAAGATTTTGGTAATGGCATTTCATTATATCCCTTTGCCCGACCCATAGAAACTGAGGCCA
TAGATGGGATAAAGGAAAGTCCTATAATTTGGACTGGTAACCAAAGTTGGGCAGAAACAGATTTAAGGGGTGAGTTAAGA
TTTAATGAAGGTCGCGATCGTATTGGACCATTATCTTTAGGTGTAGCTTTGACTCGTTCTTCTACTGGGGAAAAAAATCA
GGAAACAGAATTAGAATTGACTCCTATTCCTTCACTTCCTGGTCAACCACCTAATGAACCTACTACAACTTATACTTCAG
AATTAGAAGCAGAAAAAAAGACAACTTCAGCAGAGGTTATTTCCCCACTTCCTGGTCAACCACCAGATGAATTAGATTCT
AGTAAAATAGAGGTAAAATTAGAAAATAAATTAGAAGAAGCACGTTTAATAGTATTAGGAAATTCTCAATTTGCTACCAA
TGGTTGGTTTCAACAACAACTAAATGGAGACGTATTTCTTAATTCAATTTCTTGGTTAAGTAAACCAGAACAAGAAACAC
TTTCTATTAGTCCGAAAAAAACTACAAATCGTCGTATTGCAATGAGTTTAGTAAAAGCCAGATTTTTAAGCTGGATGGCA
ATTGTAATCTTGCCAATTTTAGCCTTGACAATTGGTGGAATAATTTGGTGGCAGCGACGATAA

Upstream 100 bases:

>100_bases
ATCATTTATTGCAGAAATCTCTCAATCTATTTATAATATTGTTTCGATGTTATTCCTAATTTACTATTCAAGAGAATTTA
GACATTGAAAAAAAGATAAT

Downstream 100 bases:

>100_bases
AAAGTCAAAATTTAGCTCCCCCCTAATACCATTTATCATTATCAAAAACTTTTCTACTTGAGTATTGATTAGGGGTAGGG
ACGTTGCGTGTTATGTCCCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 580; Mature: 580

Protein sequence:

>580_residues
MKIIKSTWSYLFWLGPISAIIGVSAGFVSGNWEPIPLILIGISIIITGLWIFYQAYSREQNPNITWWSGRATEAGTNAIF
ATISVLIILGIINFLAVRYQTRIDLTENQKFTLSPQTIEILENLQKPVKLWIFDRGENPQYTQLIENYQRQGNGKFIFEL
VDPQTQPGKANQFGVKQLGEIHLEVGEKKEVIISKQLELLTESKLTNSIEKILGSRILKIYFIQGHGERELKEGQKGFSE
AVNALESKNYIVESINLASISQVPEDADVVIIAGAQRKFLEAEVIALQEYLEKGGGVLIMLDPSTDPGLNNLFEEWGVLV
DDRLAIDDPKIGRLVGLDPWVVLVTMYGEHPITQDFGNGISLYPFARPIETEAIDGIKESPIIWTGNQSWAETDLRGELR
FNEGRDRIGPLSLGVALTRSSTGEKNQETELELTPIPSLPGQPPNEPTTTYTSELEAEKKTTSAEVISPLPGQPPDELDS
SKIEVKLENKLEEARLIVLGNSQFATNGWFQQQLNGDVFLNSISWLSKPEQETLSISPKKTTNRRIAMSLVKARFLSWMA
IVILPILALTIGGIIWWQRR

Sequences:

>Translated_580_residues
MKIIKSTWSYLFWLGPISAIIGVSAGFVSGNWEPIPLILIGISIIITGLWIFYQAYSREQNPNITWWSGRATEAGTNAIF
ATISVLIILGIINFLAVRYQTRIDLTENQKFTLSPQTIEILENLQKPVKLWIFDRGENPQYTQLIENYQRQGNGKFIFEL
VDPQTQPGKANQFGVKQLGEIHLEVGEKKEVIISKQLELLTESKLTNSIEKILGSRILKIYFIQGHGERELKEGQKGFSE
AVNALESKNYIVESINLASISQVPEDADVVIIAGAQRKFLEAEVIALQEYLEKGGGVLIMLDPSTDPGLNNLFEEWGVLV
DDRLAIDDPKIGRLVGLDPWVVLVTMYGEHPITQDFGNGISLYPFARPIETEAIDGIKESPIIWTGNQSWAETDLRGELR
FNEGRDRIGPLSLGVALTRSSTGEKNQETELELTPIPSLPGQPPNEPTTTYTSELEAEKKTTSAEVISPLPGQPPDELDS
SKIEVKLENKLEEARLIVLGNSQFATNGWFQQQLNGDVFLNSISWLSKPEQETLSISPKKTTNRRIAMSLVKARFLSWMA
IVILPILALTIGGIIWWQRR
>Mature_580_residues
MKIIKSTWSYLFWLGPISAIIGVSAGFVSGNWEPIPLILIGISIIITGLWIFYQAYSREQNPNITWWSGRATEAGTNAIF
ATISVLIILGIINFLAVRYQTRIDLTENQKFTLSPQTIEILENLQKPVKLWIFDRGENPQYTQLIENYQRQGNGKFIFEL
VDPQTQPGKANQFGVKQLGEIHLEVGEKKEVIISKQLELLTESKLTNSIEKILGSRILKIYFIQGHGERELKEGQKGFSE
AVNALESKNYIVESINLASISQVPEDADVVIIAGAQRKFLEAEVIALQEYLEKGGGVLIMLDPSTDPGLNNLFEEWGVLV
DDRLAIDDPKIGRLVGLDPWVVLVTMYGEHPITQDFGNGISLYPFARPIETEAIDGIKESPIIWTGNQSWAETDLRGELR
FNEGRDRIGPLSLGVALTRSSTGEKNQETELELTPIPSLPGQPPNEPTTTYTSELEAEKKTTSAEVISPLPGQPPDELDS
SKIEVKLENKLEEARLIVLGNSQFATNGWFQQQLNGDVFLNSISWLSKPEQETLSISPKKTTNRRIAMSLVKARFLSWMA
IVILPILALTIGGIIWWQRR

Specific function: Unknown

COG id: COG3225

COG function: function code N; ABC-type uncharacterized transport system involved in gliding motility, auxiliary component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 64880; Mature: 64880

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIIKSTWSYLFWLGPISAIIGVSAGFVSGNWEPIPLILIGISIIITGLWIFYQAYSREQ
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
NPNITWWSGRATEAGTNAIFATISVLIILGIINFLAVRYQTRIDLTENQKFTLSPQTIEI
CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEECCHHHHH
LENLQKPVKLWIFDRGENPQYTQLIENYQRQGNGKFIFELVDPQTQPGKANQFGVKQLGE
HHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHH
IHLEVGEKKEVIISKQLELLTESKLTNSIEKILGSRILKIYFIQGHGERELKEGQKGFSE
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCHHHHHHHHHHHHH
AVNALESKNYIVESINLASISQVPEDADVVIIAGAQRKFLEAEVIALQEYLEKGGGVLIM
HHHHHHCCCCEEEECCHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEE
LDPSTDPGLNNLFEEWGVLVDDRLAIDDPKIGRLVGLDPWVVLVTMYGEHPITQDFGNGI
ECCCCCCCHHHHHHHCCCEECCEEECCCCCCCEEECCCCCEEEEEECCCCCCCHHHCCCE
SLYPFARPIETEAIDGIKESPIIWTGNQSWAETDLRGELRFNEGRDRIGPLSLGVALTRS
EECCCCCCCCHHHHCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCEEECEEEECC
STGEKNQETELELTPIPSLPGQPPNEPTTTYTSELEAEKKTTSAEVISPLPGQPPDELDS
CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHCCCCCCCCCCCCC
SKIEVKLENKLEEARLIVLGNSQFATNGWFQQQLNGDVFLNSISWLSKPEQETLSISPKK
CEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHCCCCEEEECHHHHCCCCCHHEECCCCC
TTNRRIAMSLVKARFLSWMAIVILPILALTIGGIIWWQRR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECC
>Mature Secondary Structure
MKIIKSTWSYLFWLGPISAIIGVSAGFVSGNWEPIPLILIGISIIITGLWIFYQAYSREQ
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
NPNITWWSGRATEAGTNAIFATISVLIILGIINFLAVRYQTRIDLTENQKFTLSPQTIEI
CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEECCHHHHH
LENLQKPVKLWIFDRGENPQYTQLIENYQRQGNGKFIFELVDPQTQPGKANQFGVKQLGE
HHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHH
IHLEVGEKKEVIISKQLELLTESKLTNSIEKILGSRILKIYFIQGHGERELKEGQKGFSE
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCHHHHHHHHHHHHH
AVNALESKNYIVESINLASISQVPEDADVVIIAGAQRKFLEAEVIALQEYLEKGGGVLIM
HHHHHHCCCCEEEECCHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEE
LDPSTDPGLNNLFEEWGVLVDDRLAIDDPKIGRLVGLDPWVVLVTMYGEHPITQDFGNGI
ECCCCCCCHHHHHHHCCCEECCEEECCCCCCCEEECCCCCEEEEEECCCCCCCHHHCCCE
SLYPFARPIETEAIDGIKESPIIWTGNQSWAETDLRGELRFNEGRDRIGPLSLGVALTRS
EECCCCCCCCHHHHCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCEEECEEEECC
STGEKNQETELELTPIPSLPGQPPNEPTTTYTSELEAEKKTTSAEVISPLPGQPPDELDS
CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHCCCCCCCCCCCCC
SKIEVKLENKLEEARLIVLGNSQFATNGWFQQQLNGDVFLNSISWLSKPEQETLSISPKK
CEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHCCCCEEEECHHHHCCCCCHHEECCCCC
TTNRRIAMSLVKARFLSWMAIVILPILALTIGGIIWWQRR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA