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The map label for this gene is potB [H]

Identifier: 113476391

GI number: 113476391

Start: 4347060

End: 4347971

Strand: Reverse

Name: potB [H]

Synonym: Tery_2803

Alternate gene names: 113476391

Gene position: 4347971-4347060 (Counterclockwise)

Preceding gene: 113476392

Following gene: 113476390

Centisome position: 56.1

GC content: 34.76

Gene sequence:

>912_bases
ATGACTACACCTACTAAACCATATTTTCCGGTGCTTAATTCTCAGTCAAACAATAGTATAAGTCAAATATTTATTAAAAT
ATTAGGCCCTTTAATTTTATTAGGTCCGGCAGGTTTATGGTTATTGTTTTTATTATTATTGCCAACCTTAGTAATTTTTG
AGCTGAGTTTAGTAGAAAATATTCGACCAGGAGATTTAGTAATTCCTGACGGTATCGGTAACTATTTACGAGTTTTTGAA
GCCTTGAATTTAAAGGTAATTTGGCGTTCAATATATTTGGCTACGGGCACAACAATTTTATGTTTATTGTTAGGATTTCC
TGTGGCTTATTGGATTGCTATAATGTCGCCAAAACATTGGCGAAATCTACTTTTATTGGGTTTTATTTTGCCACTTTGGA
CCTCATCTTTATTACGTTCTTATGCCTGGATTACAATTTTACGCCCCACTGGTGTATTAAATTCATTTATTGGAATTATT
GGATTACCACCTTTGGAATTATTGAATCGAACTCCGGCAGTTTTGATTGGCATGAGTTATAGTTATTTACCTTATATTGT
GACGGTTCTTTATGCTTCTTTGGAAAAATTAGACCGGAGACTATTAGAGGCATCATATGATTTAGGTGCTACTCCTACAC
AAACTTTTTGGAAAGTGACAGTTCCCCAAAGTTTACCTGGTATTGCTGCTGGTTCTTTATTGGTTTTTATTAGTTCTTTG
GGAGATTTTGTTGACCCAGAATTATTGGGTGGCGCTTCCAGTATGACTGCCGCTAGATTAATTTATAACCAGTTTTTAGG
AGCTACTCAAAATTGGGGTTTTGGTTCGGCTTTAAGTATGGTTTTGATCTTAGGAGTGAGTATAGCCATTGCTCTTTTAC
TAAAATTTGGTGATGGTAAACCCTCTAAATAA

Upstream 100 bases:

>100_bases
CACCAAAAAAATTTTTAGGACATTGATAAAATTAAAATATTTATACAGTCAATAATTTTGACTTGAGCTAATTACTGATA
AACGATAATTGATAACTGAT

Downstream 100 bases:

>100_bases
AGTCATTTCAGTTATCAGTTATTAGTTATCAGTTATTATTAACATGAAAATCTAATATAAATTAAACGAATGCTTAATTT
ATTCATTAAAAAGCTGACAG

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; putrescine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MTTPTKPYFPVLNSQSNNSISQIFIKILGPLILLGPAGLWLLFLLLLPTLVIFELSLVENIRPGDLVIPDGIGNYLRVFE
ALNLKVIWRSIYLATGTTILCLLLGFPVAYWIAIMSPKHWRNLLLLGFILPLWTSSLLRSYAWITILRPTGVLNSFIGII
GLPPLELLNRTPAVLIGMSYSYLPYIVTVLYASLEKLDRRLLEASYDLGATPTQTFWKVTVPQSLPGIAAGSLLVFISSL
GDFVDPELLGGASSMTAARLIYNQFLGATQNWGFGSALSMVLILGVSIAIALLLKFGDGKPSK

Sequences:

>Translated_303_residues
MTTPTKPYFPVLNSQSNNSISQIFIKILGPLILLGPAGLWLLFLLLLPTLVIFELSLVENIRPGDLVIPDGIGNYLRVFE
ALNLKVIWRSIYLATGTTILCLLLGFPVAYWIAIMSPKHWRNLLLLGFILPLWTSSLLRSYAWITILRPTGVLNSFIGII
GLPPLELLNRTPAVLIGMSYSYLPYIVTVLYASLEKLDRRLLEASYDLGATPTQTFWKVTVPQSLPGIAAGSLLVFISSL
GDFVDPELLGGASSMTAARLIYNQFLGATQNWGFGSALSMVLILGVSIAIALLLKFGDGKPSK
>Mature_302_residues
TTPTKPYFPVLNSQSNNSISQIFIKILGPLILLGPAGLWLLFLLLLPTLVIFELSLVENIRPGDLVIPDGIGNYLRVFEA
LNLKVIWRSIYLATGTTILCLLLGFPVAYWIAIMSPKHWRNLLLLGFILPLWTSSLLRSYAWITILRPTGVLNSFIGIIG
LPPLELLNRTPAVLIGMSYSYLPYIVTVLYASLEKLDRRLLEASYDLGATPTQTFWKVTVPQSLPGIAAGSLLVFISSLG
DFVDPELLGGASSMTAARLIYNQFLGATQNWGFGSALSMVLILGVSIAIALLLKFGDGKPSK

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1176

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component I

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787080, Length=224, Percent_Identity=41.9642857142857, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1787369, Length=245, Percent_Identity=37.9591836734694, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI1787713, Length=239, Percent_Identity=32.6359832635983, Blast_Score=120, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33165; Mature: 33034

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPTKPYFPVLNSQSNNSISQIFIKILGPLILLGPAGLWLLFLLLLPTLVIFELSLVEN
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
IRPGDLVIPDGIGNYLRVFEALNLKVIWRSIYLATGTTILCLLLGFPVAYWIAIMSPKHW
CCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
RNLLLLGFILPLWTSSLLRSYAWITILRPTGVLNSFIGIIGLPPLELLNRTPAVLIGMSY
HHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHCCCHHHHHCCCCEEEEECCH
SYLPYIVTVLYASLEKLDRRLLEASYDLGATPTQTFWKVTVPQSLPGIAAGSLLVFISSL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
GDFVDPELLGGASSMTAARLIYNQFLGATQNWGFGSALSMVLILGVSIAIALLLKFGDGK
HHHCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
PSK
CCC
>Mature Secondary Structure 
TTPTKPYFPVLNSQSNNSISQIFIKILGPLILLGPAGLWLLFLLLLPTLVIFELSLVEN
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
IRPGDLVIPDGIGNYLRVFEALNLKVIWRSIYLATGTTILCLLLGFPVAYWIAIMSPKHW
CCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
RNLLLLGFILPLWTSSLLRSYAWITILRPTGVLNSFIGIIGLPPLELLNRTPAVLIGMSY
HHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHCCCHHHHHCCCCEEEEECCH
SYLPYIVTVLYASLEKLDRRLLEASYDLGATPTQTFWKVTVPQSLPGIAAGSLLVFISSL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
GDFVDPELLGGASSMTAARLIYNQFLGATQNWGFGSALSMVLILGVSIAIALLLKFGDGK
HHHCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
PSK
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; putrescine [Periplasm]; H2O [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]