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The map label for this gene is rlpA [C]

Identifier: 113476388

GI number: 113476388

Start: 4342197

End: 4343225

Strand: Reverse

Name: rlpA [C]

Synonym: Tery_2800

Alternate gene names: 113476388

Gene position: 4343225-4342197 (Counterclockwise)

Preceding gene: 113476390

Following gene: 113476387

Centisome position: 56.04

GC content: 38.39

Gene sequence:

>1029_bases
ATGAAGCACAAAATTTGGACTGGTCTTATGACTTTCCTAATGTTTTCTCATGTAGGTGCAACTTACTGTTATACCTATGT
TCTCCGGGAAGGCAAAACTGATCAGCCGAACGAACCAATAGATAGAAATTTAGAAACACATGATAATTTACCAAAAACCT
TTGCTAACAGCCAAACAGATATACTAAAAGTTAGAAAACTTAGGTTTAACACAAAAAAAGAGCCCAATAGCATTACTAAA
ATTAAAGCTCATGAACTGCTTGATCGCCAAGCGGCAACTCTCTATGTTCGCAATATTCCAGTTCTGACTTTTCTTGACTC
TGATAAAACTAATAAGAAGGCTGATCATCAAGGTTCAAACTCTGCGGCCAAAGCAGCTACTATTCAATGTTGCAATTCAA
ACAAACAAAAAGATCCCCTGTCGGAAGCATTAGTAGTTGCGTCCCGACTAGACCAATTTATTCAGGAAAGTCCCAATTTA
AAGATTACAGCAAAGTGGGATGCAGATACCAAAGGCTACATAATTCTGGCCAATGACCAAAAATTAGTAGAAATAAATGA
GCAGACTATCCTACCAGATACTACCAACGACTTAGCAATAGATACTTTACAAGCAACGAACCGCCTACGACGACAAGTTA
ATAATGCTCCTCCTTTAAAAGAAATAGGAGGTAAACCACAACTATTGCCACAACCGAAAGCAAAAAAAGTTGCTCCTAAA
CCAATTCAGTTCCAATTTCAAGGTTGGGCATCTTGGTATGGCCCTGGATTTCATGGTCGCTTAAGCGCTAATGGCGAGCG
TTTTAATCAATACGCAATGACTGCTGCTCATAAAACCCTACCTTTTGGAACAAAAGTACGAGTGACTAATTTACATAATG
GTAGTTCAGTTATTGTGCGAATTAATGACCGTGGTCCATTTATTCCAGGTAGAGTTATTGATTTATCCTCTGCTGCAGCA
GATGTTTTAGATATGATTCAAATTGGAGTTGCTCCTGTCAAAGTAGAGGTTATGGCTCGTGAATCATAA

Upstream 100 bases:

>100_bases
CATAATTAAACATCAAAGAGTTTGAATTATCCGGAAAAGTCATTCCTGGACTATACCAAGGTAAATACAACTCTAGATGT
GCTAATAAAAAAATAAATTT

Downstream 100 bases:

>100_bases
ATAAGGCTTGAGTTGGTAAAAGATCAGCAAATAAAAACCAATTTTTACCCTAAGTACGACTTTTAAATTTAATATATTTT
GGTGTTTGATGAGTCAAAGC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MKHKIWTGLMTFLMFSHVGATYCYTYVLREGKTDQPNEPIDRNLETHDNLPKTFANSQTDILKVRKLRFNTKKEPNSITK
IKAHELLDRQAATLYVRNIPVLTFLDSDKTNKKADHQGSNSAAKAATIQCCNSNKQKDPLSEALVVASRLDQFIQESPNL
KITAKWDADTKGYIILANDQKLVEINEQTILPDTTNDLAIDTLQATNRLRRQVNNAPPLKEIGGKPQLLPQPKAKKVAPK
PIQFQFQGWASWYGPGFHGRLSANGERFNQYAMTAAHKTLPFGTKVRVTNLHNGSSVIVRINDRGPFIPGRVIDLSSAAA
DVLDMIQIGVAPVKVEVMARES

Sequences:

>Translated_342_residues
MKHKIWTGLMTFLMFSHVGATYCYTYVLREGKTDQPNEPIDRNLETHDNLPKTFANSQTDILKVRKLRFNTKKEPNSITK
IKAHELLDRQAATLYVRNIPVLTFLDSDKTNKKADHQGSNSAAKAATIQCCNSNKQKDPLSEALVVASRLDQFIQESPNL
KITAKWDADTKGYIILANDQKLVEINEQTILPDTTNDLAIDTLQATNRLRRQVNNAPPLKEIGGKPQLLPQPKAKKVAPK
PIQFQFQGWASWYGPGFHGRLSANGERFNQYAMTAAHKTLPFGTKVRVTNLHNGSSVIVRINDRGPFIPGRVIDLSSAAA
DVLDMIQIGVAPVKVEVMARES
>Mature_342_residues
MKHKIWTGLMTFLMFSHVGATYCYTYVLREGKTDQPNEPIDRNLETHDNLPKTFANSQTDILKVRKLRFNTKKEPNSITK
IKAHELLDRQAATLYVRNIPVLTFLDSDKTNKKADHQGSNSAAKAATIQCCNSNKQKDPLSEALVVASRLDQFIQESPNL
KITAKWDADTKGYIILANDQKLVEINEQTILPDTTNDLAIDTLQATNRLRRQVNNAPPLKEIGGKPQLLPQPKAKKVAPK
PIQFQFQGWASWYGPGFHGRLSANGERFNQYAMTAAHKTLPFGTKVRVTNLHNGSSVIVRINDRGPFIPGRVIDLSSAAA
DVLDMIQIGVAPVKVEVMARES

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=92, Percent_Identity=46.7391304347826, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 38196; Mature: 38196

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHKIWTGLMTFLMFSHVGATYCYTYVLREGKTDQPNEPIDRNLETHDNLPKTFANSQTD
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHH
ILKVRKLRFNTKKEPNSITKIKAHELLDRQAATLYVRNIPVLTFLDSDKTNKKADHQGSN
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCEEEEECCCCCCCCCCCCCCC
SAAKAATIQCCNSNKQKDPLSEALVVASRLDQFIQESPNLKITAKWDADTKGYIILANDQ
CHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEECCC
KLVEINEQTILPDTTNDLAIDTLQATNRLRRQVNNAPPLKEIGGKPQLLPQPKAKKVAPK
EEEEECCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCC
PIQFQFQGWASWYGPGFHGRLSANGERFNQYAMTAAHKTLPFGTKVRVTNLHNGSSVIVR
CEEEEEECEEHHCCCCCCCEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEE
INDRGPFIPGRVIDLSSAAADVLDMIQIGVAPVKVEVMARES
ECCCCCCCCCEEEECCHHHHHHHHHHHHCCCEEEEEEEEECC
>Mature Secondary Structure
MKHKIWTGLMTFLMFSHVGATYCYTYVLREGKTDQPNEPIDRNLETHDNLPKTFANSQTD
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHH
ILKVRKLRFNTKKEPNSITKIKAHELLDRQAATLYVRNIPVLTFLDSDKTNKKADHQGSN
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCEEEEECCCCCCCCCCCCCCC
SAAKAATIQCCNSNKQKDPLSEALVVASRLDQFIQESPNLKITAKWDADTKGYIILANDQ
CHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEECCC
KLVEINEQTILPDTTNDLAIDTLQATNRLRRQVNNAPPLKEIGGKPQLLPQPKAKKVAPK
EEEEECCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCC
PIQFQFQGWASWYGPGFHGRLSANGERFNQYAMTAAHKTLPFGTKVRVTNLHNGSSVIVR
CEEEEEECEEHHCCCCCCCEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEE
INDRGPFIPGRVIDLSSAAADVLDMIQIGVAPVKVEVMARES
ECCCCCCCCCEEEECCHHHHHHHHHHHHCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]