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The map label for this gene is xyn11A [H]

Identifier: 113476386

GI number: 113476386

Start: 4339110

End: 4340075

Strand: Reverse

Name: xyn11A [H]

Synonym: Tery_2798

Alternate gene names: 113476386

Gene position: 4340075-4339110 (Counterclockwise)

Preceding gene: 113476387

Following gene: 113476385

Centisome position: 56.0

GC content: 33.23

Gene sequence:

>966_bases
ATGACAAATTTAGATAGATTATCTAAGCCGGGAAAACCTTTAACAACAATTATAGCAGCAGGAGGCAGTTTTTTAATTGG
GATACTAATACCAGATATATCTGCGAAACTACACTTAAACACAAGAGAAATCCCACCAGTAACTAGCAGTGCAATTAATC
AACAAGCAAATAGTAAAGAAAACAAATTAGAAATAACTAAAATCAGTCCTATCCTGGCTAAAAACATTGATACAACTCGA
CAGAAACTTAGGGAATTAGAATTAAAAATTTTTCAATTTAGTGTACCTAAAAGGTTTCAAGGAAAAACTGTTCAAAATAT
TACTCTTAAAAACAAACAAAAAGTTATTGCCTTAACTTTTGATGACGGTCCATGGAAGAAAACTACAGAACAAATATTAG
ATATTCTGAAAACACATAACATTAAAGCAACTTTTTTCGTAGTCGGCCAATATTTAAACGAACATCAAGAAATAGGGAAA
AAAATTGTAGAAGCAGGTCATGTTATTGCGAATCATACATGGAACCACCCCGATCAAAAAAGTAAAATTAATCAAAAGCG
TATTGAAAGTGAAATTGAAAGTACAGCAAAGCTTATATATCAAGTCACAGGTAAGAAGACTAAACTATTTCGCCCTCCTG
GTGGTGTTCTTGAGAATGGTTTAGCTGACTATGTAAAAGAACGGAAACATACTGTAGTCTTATGGTCTGCTGATTCTGTA
GACTGGTATTACAGGTCAGCTCCAGAAATTACCAAAAGGGTTTTGAATAAAGCTAGCAACGGTGGTATTGTATTACTACA
TGATGGTGGAGGCCCAAGAAAGCATGTTGTAGAAGCTTTACCCAAGATCATCTCTGGTTTGAAAAAACAAGGTTATGAGT
TTGTAACAATACCAGAACTTCTCACAATTAAAGATAGAGAATTAAATAAGCAAGAGTTAGCAAAACAACAAAATCAAAAC
CAATAA

Upstream 100 bases:

>100_bases
TAAACAGTAATTATGAAAGTAAAATCATCTAAAAAATAGGTCAAAATTTCTATTTTCAAAATTTCTGCTCAAAAATTACA
AAATAGTAAGAAAGAAAAAG

Downstream 100 bases:

>100_bases
CAATTAAAGAAGTTGATAGGTTTTAGGTTTAAGAGCATGGTAATTTAAACCAACCCCAAGCAATTAATGATAGTCTATTT
TTTTTCCTGTGAAAGGTATG

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Endo-1,4-beta-xylanase 11A; Xylanase xyn11A; Xylanase xynT; Acetylated xylan deacetylase [H]

Number of amino acids: Translated: 321; Mature: 320

Protein sequence:

>321_residues
MTNLDRLSKPGKPLTTIIAAGGSFLIGILIPDISAKLHLNTREIPPVTSSAINQQANSKENKLEITKISPILAKNIDTTR
QKLRELELKIFQFSVPKRFQGKTVQNITLKNKQKVIALTFDDGPWKKTTEQILDILKTHNIKATFFVVGQYLNEHQEIGK
KIVEAGHVIANHTWNHPDQKSKINQKRIESEIESTAKLIYQVTGKKTKLFRPPGGVLENGLADYVKERKHTVVLWSADSV
DWYYRSAPEITKRVLNKASNGGIVLLHDGGGPRKHVVEALPKIISGLKKQGYEFVTIPELLTIKDRELNKQELAKQQNQN
Q

Sequences:

>Translated_321_residues
MTNLDRLSKPGKPLTTIIAAGGSFLIGILIPDISAKLHLNTREIPPVTSSAINQQANSKENKLEITKISPILAKNIDTTR
QKLRELELKIFQFSVPKRFQGKTVQNITLKNKQKVIALTFDDGPWKKTTEQILDILKTHNIKATFFVVGQYLNEHQEIGK
KIVEAGHVIANHTWNHPDQKSKINQKRIESEIESTAKLIYQVTGKKTKLFRPPGGVLENGLADYVKERKHTVVLWSADSV
DWYYRSAPEITKRVLNKASNGGIVLLHDGGGPRKHVVEALPKIISGLKKQGYEFVTIPELLTIKDRELNKQELAKQQNQN
Q
>Mature_320_residues
TNLDRLSKPGKPLTTIIAAGGSFLIGILIPDISAKLHLNTREIPPVTSSAINQQANSKENKLEITKISPILAKNIDTTRQ
KLRELELKIFQFSVPKRFQGKTVQNITLKNKQKVIALTFDDGPWKKTTEQILDILKTHNIKATFFVVGQYLNEHQEIGKK
IVEAGHVIANHTWNHPDQKSKINQKRIESEIESTAKLIYQVTGKKTKLFRPPGGVLENGLADYVKERKHTVVLWSADSVD
WYYRSAPEITKRVLNKASNGGIVLLHDGGGPRKHVVEALPKIISGLKKQGYEFVTIPELLTIKDRELNKQELAKQQNQNQ

Specific function: Endo-acting xylanase which specifically cleaves internal linkages on the xylan backbone, releasing xylooligosaccharides. Is also probably able, via its C-terminal domain, to remove acetyl groups from acetylated xylan, and thus it is probably capable of hy

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 polysaccharide deacetylase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323338, Length=176, Percent_Identity=35.7954545454545, Blast_Score=84, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6323339, Length=161, Percent_Identity=32.9192546583851, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005084
- InterPro:   IPR008985
- InterPro:   IPR008979
- InterPro:   IPR011330
- InterPro:   IPR001137
- InterPro:   IPR013319
- InterPro:   IPR018208
- InterPro:   IPR002509 [H]

Pfam domain/function: PF03422 CBM_6; PF00457 Glyco_hydro_11; PF01522 Polysacc_deac_1 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 36167; Mature: 36036

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: PS01008 DNAA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
0.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNLDRLSKPGKPLTTIIAAGGSFLIGILIPDISAKLHLNTREIPPVTSSAINQQANSKE
CCCCHHCCCCCCCHHHEEECCCCEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCC
NKLEITKISPILAKNIDTTRQKLRELELKIFQFSVPKRFQGKTVQNITLKNKQKVIALTF
CCEEEEEECHHHHHCCHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEEECCCCEEEEEEE
DDGPWKKTTEQILDILKTHNIKATFFVVGQYLNEHQEIGKKIVEAGHVIANHTWNHPDQK
CCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCHH
SKINQKRIESEIESTAKLIYQVTGKKTKLFRPPGGVLENGLADYVKERKHTVVLWSADSV
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCC
DWYYRSAPEITKRVLNKASNGGIVLLHDGGGPRKHVVEALPKIISGLKKQGYEFVTIPEL
CHHCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEECCHH
LTIKDRELNKQELAKQQNQNQ
EEECCCCCCHHHHHHHHCCCC
>Mature Secondary Structure 
TNLDRLSKPGKPLTTIIAAGGSFLIGILIPDISAKLHLNTREIPPVTSSAINQQANSKE
CCCHHCCCCCCCHHHEEECCCCEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCC
NKLEITKISPILAKNIDTTRQKLRELELKIFQFSVPKRFQGKTVQNITLKNKQKVIALTF
CCEEEEEECHHHHHCCHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEEECCCCEEEEEEE
DDGPWKKTTEQILDILKTHNIKATFFVVGQYLNEHQEIGKKIVEAGHVIANHTWNHPDQK
CCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCHH
SKINQKRIESEIESTAKLIYQVTGKKTKLFRPPGGVLENGLADYVKERKHTVVLWSADSV
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCC
DWYYRSAPEITKRVLNKASNGGIVLLHDGGGPRKHVVEALPKIISGLKKQGYEFVTIPEL
CHHCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEECCHH
LTIKDRELNKQELAKQQNQNQ
EEECCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA