| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476365
Identifier: 113476365
GI number: 113476365
Start: 4294717
End: 4296081
Strand: Reverse
Name: 113476365
Synonym: Tery_2770
Alternate gene names: NA
Gene position: 4296081-4294717 (Counterclockwise)
Preceding gene: 113476366
Following gene: 113476364
Centisome position: 55.43
GC content: 33.99
Gene sequence:
>1365_bases ATGGCTGATATTAAAATTTTACACTTAATTAATCGTCTTAGTTTAGGACCGACTCCTGGACAACTTGAAAAGATTAAAAA TATTGGTGTAGAAAATTATATTCAATCTCAACTAGAACCTAATTCTATACCCTACCAAAAACTACTAATTCAAAAGCTAA AATATCTAGATACATTACCCCTAACTCCTAGTGAAATAATCAAAGAATTACAACAACTTCAACAACAGGGAAAAGAATTA AAATTAGATAGAATAGCATTAAATAGAATCAAACAACGTTTTGAGCAAAAGGTTTTTTTACAGGGGAGTAAAGGACGTTT TTTAAGGAATCTAGAAAGTCCGCGTCATTTAGAGGAGGTGATGGTAGATTTTTGGTATAATCACTTTAATGTTTTTGGTC GTCAAGGACTAAATCGTTTATATTTTAGCTGTTATGAACAGCAGGCAATTAGACCCTATGCTTTGGGAAAGTTTAGATTA TTATTAGGCGCTACTGCTCATCATCCAGCTATGTTAATTTATTTAGATAATTGGCAAAGCCGTAGAGGTAGAATAAATGA AAATTATGCTAGAGAATTATTAGAATTACATACTTTAGGTGTGGATGGAGGCTATAGTCAAGATGATGTTATGGCTTTAG CAAAAATTTTGACTGGTTGGGGTCTACCTCCTAATAACAAAAGAGCAGAAGATAAAGATGGATTTTATTTTGATCAAAAA CGTCACGAACCAGGAGATAAATTTTTTCTCGGACAAACAATTAAAGAGAATGGGATAGCTGAAGGTGAAACAGCTTTAGA TATTTTGGCTAGTCATCCTTCAACGGCTAGATATATTAGTTATAAATTAGCTCAAACTTTTGTTTTAGACCAACCATCTG AGTCTTTAGTAAAAGTTTTATCTCAGAGTTTTTTGGAGAGTGATGGGGATATTTCTCGGGTACTTAATACTCTGTTCAAT AGTTCAGAGTTTTGGCAACCAGAGGTATATAATTCTAAGTTTAAAAATCCTTATCGGTTTGTAGTTTCTGCGATGAGAGC TATTGGTAATGAGGTTGATAATTTTCGACCTATTAATGGGATTTTAGACCAGTTAGGAATGCCTATTTATGGTTGTATTA CTCCTGATGGTTATAAAAATACAAAAGATGCTTGGTTAGATTCGGATACCATGATTCGACGGAGTAGTTTAGCTGTGCCT TTATCTGGTGGTTTATTGGGTCGGGGTAAACCTATTAGTGCAGAAAAGTTAATGGGGACTTTGGGTAATAATTTTTCTGC TCAGACTCGTGGGGTAATTGATCAAAGTCCTGGTGATTTAAGGGCGGCTTTAATTTTTGGTAGTCCTGAGTTTATGAGGT ATTAA
Upstream 100 bases:
>100_bases CTCAGTTTGGATTTAAGATTCTTTTGAAAAACAGTTTATAAATAATATAATAAATAATAATTCATAATTCATAATTTATA ACTCATAATTCATAACTGAA
Downstream 100 bases:
>100_bases AAGAATCGGAATTTAATGTTTTCAAAACCATTTTATGAGAAAAGTTTGACATCTTTTCCCGGTGCCAAATCTAACAAATA TTCAAACTCTTCCATCGAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 454; Mature: 453
Protein sequence:
>454_residues MADIKILHLINRLSLGPTPGQLEKIKNIGVENYIQSQLEPNSIPYQKLLIQKLKYLDTLPLTPSEIIKELQQLQQQGKEL KLDRIALNRIKQRFEQKVFLQGSKGRFLRNLESPRHLEEVMVDFWYNHFNVFGRQGLNRLYFSCYEQQAIRPYALGKFRL LLGATAHHPAMLIYLDNWQSRRGRINENYARELLELHTLGVDGGYSQDDVMALAKILTGWGLPPNNKRAEDKDGFYFDQK RHEPGDKFFLGQTIKENGIAEGETALDILASHPSTARYISYKLAQTFVLDQPSESLVKVLSQSFLESDGDISRVLNTLFN SSEFWQPEVYNSKFKNPYRFVVSAMRAIGNEVDNFRPINGILDQLGMPIYGCITPDGYKNTKDAWLDSDTMIRRSSLAVP LSGGLLGRGKPISAEKLMGTLGNNFSAQTRGVIDQSPGDLRAALIFGSPEFMRY
Sequences:
>Translated_454_residues MADIKILHLINRLSLGPTPGQLEKIKNIGVENYIQSQLEPNSIPYQKLLIQKLKYLDTLPLTPSEIIKELQQLQQQGKEL KLDRIALNRIKQRFEQKVFLQGSKGRFLRNLESPRHLEEVMVDFWYNHFNVFGRQGLNRLYFSCYEQQAIRPYALGKFRL LLGATAHHPAMLIYLDNWQSRRGRINENYARELLELHTLGVDGGYSQDDVMALAKILTGWGLPPNNKRAEDKDGFYFDQK RHEPGDKFFLGQTIKENGIAEGETALDILASHPSTARYISYKLAQTFVLDQPSESLVKVLSQSFLESDGDISRVLNTLFN SSEFWQPEVYNSKFKNPYRFVVSAMRAIGNEVDNFRPINGILDQLGMPIYGCITPDGYKNTKDAWLDSDTMIRRSSLAVP LSGGLLGRGKPISAEKLMGTLGNNFSAQTRGVIDQSPGDLRAALIFGSPEFMRY >Mature_453_residues ADIKILHLINRLSLGPTPGQLEKIKNIGVENYIQSQLEPNSIPYQKLLIQKLKYLDTLPLTPSEIIKELQQLQQQGKELK LDRIALNRIKQRFEQKVFLQGSKGRFLRNLESPRHLEEVMVDFWYNHFNVFGRQGLNRLYFSCYEQQAIRPYALGKFRLL LGATAHHPAMLIYLDNWQSRRGRINENYARELLELHTLGVDGGYSQDDVMALAKILTGWGLPPNNKRAEDKDGFYFDQKR HEPGDKFFLGQTIKENGIAEGETALDILASHPSTARYISYKLAQTFVLDQPSESLVKVLSQSFLESDGDISRVLNTLFNS SEFWQPEVYNSKFKNPYRFVVSAMRAIGNEVDNFRPINGILDQLGMPIYGCITPDGYKNTKDAWLDSDTMIRRSSLAVPL SGGLLGRGKPISAEKLMGTLGNNFSAQTRGVIDQSPGDLRAALIFGSPEFMRY
Specific function: Unknown
COG id: COG5267
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51628; Mature: 51497
Theoretical pI: Translated: 9.18; Mature: 9.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADIKILHLINRLSLGPTPGQLEKIKNIGVENYIQSQLEPNSIPYQKLLIQKLKYLDTLP CCCHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC LTPSEIIKELQQLQQQGKELKLDRIALNRIKQRFEQKVFLQGSKGRFLRNLESPRHLEEV CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHCCCHHHHHHH MVDFWYNHFNVFGRQGLNRLYFSCYEQQAIRPYALGKFRLLLGATAHHPAMLIYLDNWQS HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCC RRGRINENYARELLELHTLGVDGGYSQDDVMALAKILTGWGLPPNNKRAEDKDGFYFDQK CCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCC RHEPGDKFFLGQTIKENGIAEGETALDILASHPSTARYISYKLAQTFVLDQPSESLVKVL CCCCCCCEEECCHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH SQSFLESDGDISRVLNTLFNSSEFWQPEVYNSKFKNPYRFVVSAMRAIGNEVDNFRPING HHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHH ILDQLGMPIYGCITPDGYKNTKDAWLDSDTMIRRSSLAVPLSGGLLGRGKPISAEKLMGT HHHHCCCCEEEEECCCCCCCCCHHCCCCHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHH LGNNFSAQTRGVIDQSPGDLRAALIFGSPEFMRY HCCCCCCHHCCCCCCCCCCEEEEEEECCHHHHCC >Mature Secondary Structure ADIKILHLINRLSLGPTPGQLEKIKNIGVENYIQSQLEPNSIPYQKLLIQKLKYLDTLP CCHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC LTPSEIIKELQQLQQQGKELKLDRIALNRIKQRFEQKVFLQGSKGRFLRNLESPRHLEEV CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHCCCHHHHHHH MVDFWYNHFNVFGRQGLNRLYFSCYEQQAIRPYALGKFRLLLGATAHHPAMLIYLDNWQS HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCC RRGRINENYARELLELHTLGVDGGYSQDDVMALAKILTGWGLPPNNKRAEDKDGFYFDQK CCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCC RHEPGDKFFLGQTIKENGIAEGETALDILASHPSTARYISYKLAQTFVLDQPSESLVKVL CCCCCCCEEECCHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH SQSFLESDGDISRVLNTLFNSSEFWQPEVYNSKFKNPYRFVVSAMRAIGNEVDNFRPING HHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHH ILDQLGMPIYGCITPDGYKNTKDAWLDSDTMIRRSSLAVPLSGGLLGRGKPISAEKLMGT HHHHCCCCEEEEECCCCCCCCCHHCCCCHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHH LGNNFSAQTRGVIDQSPGDLRAALIFGSPEFMRY HCCCCCCHHCCCCCCCCCCEEEEEEECCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA