| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476363
Identifier: 113476363
GI number: 113476363
Start: 4289908
End: 4291026
Strand: Reverse
Name: 113476363
Synonym: Tery_2768
Alternate gene names: NA
Gene position: 4291026-4289908 (Counterclockwise)
Preceding gene: 113476364
Following gene: 113476362
Centisome position: 55.37
GC content: 31.9
Gene sequence:
>1119_bases ATGAGTGGGCTACCAGGAGAACTTTATAAAGAATGCAGGGATGTTCTTTTAGAATGCGACATTTTTACCAATTTTCAATA CTTGCGTAGTTTTTGCGGGGCAATTAAGGAATTAAATGTGGTATCAAATAAACTGAAAGAAGCTAATACACCAGGGTTAT TAGTGATGTTAAATCTGGATATTTTAATAAAAACAAGACATCAAGAATATGGGTGTATATTTATAATTTTTTTGGAAAAT TTGAGAGATGAATACTATGAAGAAGACGAGATGTGGCATAGAATTAATAATTTATGGAACAAGGTTAAAAAAGAATTAGA AAATCCATCTTTACCCTTAAATTCATCAACATCTTTAGGCAATAATAATAACAGCCAGTTGTTTCAATCAATAATTGATA TTGATTTTTCAGAACAAGAAGATACTGTTAGAAAAGCTATAAAATGCCAAAAATCACACAAACGAACGGGAGCTTTTCTG ATTGATGGGTATGATGAAAATTGTGGTCAGAAAGCTCTGCTTACTAGGCTATTACGTAAATTGCCAGAATTAAGTAATGG ACGTAAAATCCAAAGGGATTTAACTCGGATGAGCGATATTAGGGAATTATGGGGAAAAATTTCTTCTGAATTTTTTGGTT CAAATACTACAGACGAACAGGTTATTAATGCAATTTTACAATGTTTAGAAACTCAAAATTTAATTTTTATTTTTTCAGGA CTCCACCGTACTTTTACAGGTTTTTTACCAGATTTAATTAAAAAATTTTGGTGGCCAATAGTCGAAAAAGCTACTCACCA AAAAACTTATTTATTAATGTTTTTGGTTGATGATAAAGGAATAGTTTGTAAATCAGGAGTTTCCCTAACTTGGAAGTTTG AAAATTCAAAATATCCTAAGGACCCTTTATGCTTACCTGAAACTGGTAAATTTTCATACTATCATTTAGAAACATGGAAA AATAGTGTTGTACGAAAAAATATGGTACCTGAGAGTATATCTGTTGATGAATTACTCCAAAAATCTCAAGGAGGTGTTCC TGAGCTGGTTTATAGACAAATTTGTGATTACTGTGGCCGTAGTTGGGAAGGAGGGTTGGCCAAATGGTTGATTCAGTGA
Upstream 100 bases:
>100_bases ATCAAGATGGTTTTTAACTGGGTTTGCCAAAAAAATGCTATAGGTGTAGATTTCTATTATTATATATTAATAGTGTAATA CAATCTTTATAAAAAATTGT
Downstream 100 bases:
>100_bases TTCCTCGCCTCTATACGGGGGAAAGACAACCTTCGGAACAGGAGTGCGAACTGCATGGACTTGAACCTTATATACCTTCA CCAGAGTTGGTTGAGGCAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 372; Mature: 371
Protein sequence:
>372_residues MSGLPGELYKECRDVLLECDIFTNFQYLRSFCGAIKELNVVSNKLKEANTPGLLVMLNLDILIKTRHQEYGCIFIIFLEN LRDEYYEEDEMWHRINNLWNKVKKELENPSLPLNSSTSLGNNNNSQLFQSIIDIDFSEQEDTVRKAIKCQKSHKRTGAFL IDGYDENCGQKALLTRLLRKLPELSNGRKIQRDLTRMSDIRELWGKISSEFFGSNTTDEQVINAILQCLETQNLIFIFSG LHRTFTGFLPDLIKKFWWPIVEKATHQKTYLLMFLVDDKGIVCKSGVSLTWKFENSKYPKDPLCLPETGKFSYYHLETWK NSVVRKNMVPESISVDELLQKSQGGVPELVYRQICDYCGRSWEGGLAKWLIQ
Sequences:
>Translated_372_residues MSGLPGELYKECRDVLLECDIFTNFQYLRSFCGAIKELNVVSNKLKEANTPGLLVMLNLDILIKTRHQEYGCIFIIFLEN LRDEYYEEDEMWHRINNLWNKVKKELENPSLPLNSSTSLGNNNNSQLFQSIIDIDFSEQEDTVRKAIKCQKSHKRTGAFL IDGYDENCGQKALLTRLLRKLPELSNGRKIQRDLTRMSDIRELWGKISSEFFGSNTTDEQVINAILQCLETQNLIFIFSG LHRTFTGFLPDLIKKFWWPIVEKATHQKTYLLMFLVDDKGIVCKSGVSLTWKFENSKYPKDPLCLPETGKFSYYHLETWK NSVVRKNMVPESISVDELLQKSQGGVPELVYRQICDYCGRSWEGGLAKWLIQ >Mature_371_residues SGLPGELYKECRDVLLECDIFTNFQYLRSFCGAIKELNVVSNKLKEANTPGLLVMLNLDILIKTRHQEYGCIFIIFLENL RDEYYEEDEMWHRINNLWNKVKKELENPSLPLNSSTSLGNNNNSQLFQSIIDIDFSEQEDTVRKAIKCQKSHKRTGAFLI DGYDENCGQKALLTRLLRKLPELSNGRKIQRDLTRMSDIRELWGKISSEFFGSNTTDEQVINAILQCLETQNLIFIFSGL HRTFTGFLPDLIKKFWWPIVEKATHQKTYLLMFLVDDKGIVCKSGVSLTWKFENSKYPKDPLCLPETGKFSYYHLETWKN SVVRKNMVPESISVDELLQKSQGGVPELVYRQICDYCGRSWEGGLAKWLIQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43171; Mature: 43040
Theoretical pI: Translated: 7.03; Mature: 7.03
Prosite motif: PS00268 CECROPIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGLPGELYKECRDVLLECDIFTNFQYLRSFCGAIKELNVVSNKLKEANTPGLLVMLNLD CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECE ILIKTRHQEYGCIFIIFLENLRDEYYEEDEMWHRINNLWNKVKKELENPSLPLNSSTSLG EEEEECCCCCCEEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC NNNNSQLFQSIIDIDFSEQEDTVRKAIKCQKSHKRTGAFLIDGYDENCGQKALLTRLLRK CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH LPELSNGRKIQRDLTRMSDIRELWGKISSEFFGSNTTDEQVINAILQCLETQNLIFIFSG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEHH LHRTFTGFLPDLIKKFWWPIVEKATHQKTYLLMFLVDDKGIVCKSGVSLTWKFENSKYPK HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEECCCEEEEEECCCCCCC DPLCLPETGKFSYYHLETWKNSVVRKNMVPESISVDELLQKSQGGVPELVYRQICDYCGR CCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCC SWEGGLAKWLIQ CCCCCHHHHHCC >Mature Secondary Structure SGLPGELYKECRDVLLECDIFTNFQYLRSFCGAIKELNVVSNKLKEANTPGLLVMLNLD CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECE ILIKTRHQEYGCIFIIFLENLRDEYYEEDEMWHRINNLWNKVKKELENPSLPLNSSTSLG EEEEECCCCCCEEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC NNNNSQLFQSIIDIDFSEQEDTVRKAIKCQKSHKRTGAFLIDGYDENCGQKALLTRLLRK CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH LPELSNGRKIQRDLTRMSDIRELWGKISSEFFGSNTTDEQVINAILQCLETQNLIFIFSG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEHH LHRTFTGFLPDLIKKFWWPIVEKATHQKTYLLMFLVDDKGIVCKSGVSLTWKFENSKYPK HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEECCCEEEEEECCCCCCC DPLCLPETGKFSYYHLETWKNSVVRKNMVPESISVDELLQKSQGGVPELVYRQICDYCGR CCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCC SWEGGLAKWLIQ CCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA