| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476354
Identifier: 113476354
GI number: 113476354
Start: 4271969
End: 4273429
Strand: Reverse
Name: 113476354
Synonym: Tery_2759
Alternate gene names: NA
Gene position: 4273429-4271969 (Counterclockwise)
Preceding gene: 113476355
Following gene: 113476349
Centisome position: 55.14
GC content: 41.27
Gene sequence:
>1461_bases ATGATGCGCGGTCAAAAAACTATGATGGTACTATTGAGTCTAGCTCTAAACTTGGTATTGGTAGCACCTCCTGTGAAAGC TGAACCAAAAGTTACCATAACCCCATCCAATTTAACCGTAGTAGGAACTAAATGTCCAGTTTTTTTTTACTGTCCTGTCC TGAAGCGCCGTCTAGTTTTACAAACTAATCAGGCCATCGCAAACTTACAAATACTCAGCCTAGATTTGGATCGAACCGAT GGAACCACCGTTTTACAAGGTAGCGCGATTAATCCAATTTTGTCCACAACCTCAGTGGAACCAAATCAACCACTGACTAT CCCAGTTGAATTCAACTTAAACGATGCCAAAAGTGGTGAATTTAGTGGTGTTTTACTAGCCATCCATTCTGATGGACAAC TGGTTATACCTATAATTGTACGAGTAAAAGATCATTGGCTGGGACCAATATTCCTCTTGCTATTAGGCGTTATGGTAAGT ATTGGCATGTCTGCCTACCGTACTGATGGCAGAAACCGTGATGAAATTGTGGTGCTAGTTAGCCGCATTCGCACTCAGAT GAAAGCTGACCCAGAACTAGTAAAATCATTTCAGGTAAAAATCAATGGATATCTAATTGATGTAGACACCGATTTAACAA ACAAGCGATGGGATGAGGCAAAGCAAGCTGTAGCAAAAGCTCAAACAACTTGGGATAAATGGCGAAAAAGTAGAGAAGAC TGGTTAGCTTTATCCGAATTTGAGTCTTCCTTTCTAGATCTAGATAATCTCACCACTGATGCTCCCTATGTACAAACAGT AGGTAGCTACTTAGAGAATATTAAGCGACAAACAGCTGATAAAGAAAATCCCGAACAGTTGAGGAAAGAGTTAAATGATT TGCGGCAACAACTGGTTCGTTACCTGGGAGGTGAAGCTAAACTAGAGAGATTCGATAATCTTAGAAATGAGTTAACTGGG TCAGCACAACAAGAGCAAGCACTTAGAGATATATCTCAATACTTGCAGCAGGAATTAAATAATCTTTCTCCAACTGAGCT AGAAGCTTTCCAAAGATGGGAGCAGGAGATTGATAATGAACTCAAACAACTAGACCAAGCCATTAAACAACAACAAATTT CCAACAATGAAGCTCAAAGTAACCTCAGCATAACTTCCAGGGGTGTTAGTAGCACCTATCCTGCCCGCCTTCCTAACCCA GTTCCTGATGTTCAACCTCTACAACTTAATCCTGTAGGGTCTGCCCGCAATCTATTTTTGTTTCAATTATTAAGTTATAC AATTGCAATTTTCCTCCTGGCGGGTGCAGGCTTTAGACAACTTTATGTCACTCAACCCACCTTTGGAGCAAATCTTTGGA CAGATTATTTTGCTCTGCTAGCTTGGGGTTTTGGAGCTGAGGCTACTCGCGATGCCGTTACCAAAACTATCCGCGAGTGG AAATTGCCCGGACTCAAATGA
Upstream 100 bases:
>100_bases CCCTACCATGATTTACCGTGCAGGAAAACTGGGGTATCATAACAGATAATAATTATACTTTAACAAAATGTTAGGTAATC AAAGAATCAGGAGAACTAGT
Downstream 100 bases:
>100_bases AACAAAGCCAAGTTAGGTTTTAGGTTTTAGGTTTTAGGTTTAAAAATTAACAAACAGAAAACAAATATCAATGTACTTAT GGGAGCGATCGCTAATTTTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 486; Mature: 486
Protein sequence:
>486_residues MMRGQKTMMVLLSLALNLVLVAPPVKAEPKVTITPSNLTVVGTKCPVFFYCPVLKRRLVLQTNQAIANLQILSLDLDRTD GTTVLQGSAINPILSTTSVEPNQPLTIPVEFNLNDAKSGEFSGVLLAIHSDGQLVIPIIVRVKDHWLGPIFLLLLGVMVS IGMSAYRTDGRNRDEIVVLVSRIRTQMKADPELVKSFQVKINGYLIDVDTDLTNKRWDEAKQAVAKAQTTWDKWRKSRED WLALSEFESSFLDLDNLTTDAPYVQTVGSYLENIKRQTADKENPEQLRKELNDLRQQLVRYLGGEAKLERFDNLRNELTG SAQQEQALRDISQYLQQELNNLSPTELEAFQRWEQEIDNELKQLDQAIKQQQISNNEAQSNLSITSRGVSSTYPARLPNP VPDVQPLQLNPVGSARNLFLFQLLSYTIAIFLLAGAGFRQLYVTQPTFGANLWTDYFALLAWGFGAEATRDAVTKTIREW KLPGLK
Sequences:
>Translated_486_residues MMRGQKTMMVLLSLALNLVLVAPPVKAEPKVTITPSNLTVVGTKCPVFFYCPVLKRRLVLQTNQAIANLQILSLDLDRTD GTTVLQGSAINPILSTTSVEPNQPLTIPVEFNLNDAKSGEFSGVLLAIHSDGQLVIPIIVRVKDHWLGPIFLLLLGVMVS IGMSAYRTDGRNRDEIVVLVSRIRTQMKADPELVKSFQVKINGYLIDVDTDLTNKRWDEAKQAVAKAQTTWDKWRKSRED WLALSEFESSFLDLDNLTTDAPYVQTVGSYLENIKRQTADKENPEQLRKELNDLRQQLVRYLGGEAKLERFDNLRNELTG SAQQEQALRDISQYLQQELNNLSPTELEAFQRWEQEIDNELKQLDQAIKQQQISNNEAQSNLSITSRGVSSTYPARLPNP VPDVQPLQLNPVGSARNLFLFQLLSYTIAIFLLAGAGFRQLYVTQPTFGANLWTDYFALLAWGFGAEATRDAVTKTIREW KLPGLK >Mature_486_residues MMRGQKTMMVLLSLALNLVLVAPPVKAEPKVTITPSNLTVVGTKCPVFFYCPVLKRRLVLQTNQAIANLQILSLDLDRTD GTTVLQGSAINPILSTTSVEPNQPLTIPVEFNLNDAKSGEFSGVLLAIHSDGQLVIPIIVRVKDHWLGPIFLLLLGVMVS IGMSAYRTDGRNRDEIVVLVSRIRTQMKADPELVKSFQVKINGYLIDVDTDLTNKRWDEAKQAVAKAQTTWDKWRKSRED WLALSEFESSFLDLDNLTTDAPYVQTVGSYLENIKRQTADKENPEQLRKELNDLRQQLVRYLGGEAKLERFDNLRNELTG SAQQEQALRDISQYLQQELNNLSPTELEAFQRWEQEIDNELKQLDQAIKQQQISNNEAQSNLSITSRGVSSTYPARLPNP VPDVQPLQLNPVGSARNLFLFQLLSYTIAIFLLAGAGFRQLYVTQPTFGANLWTDYFALLAWGFGAEATRDAVTKTIREW KLPGLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54701; Mature: 54701
Theoretical pI: Translated: 5.64; Mature: 5.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRGQKTMMVLLSLALNLVLVAPPVKAEPKVTITPSNLTVVGTKCPVFFYCPVLKRRLVL CCCCHHHHHHHHHHHHHHEEECCCCCCCCEEEEECCCEEEEECCCCCEEECHHHHHHHHH QTNQAIANLQILSLDLDRTDGTTVLQGSAINPILSTTSVEPNQPLTIPVEFNLNDAKSGE HCCHHHHEEEEEEEECCCCCCCEEEECCCCCCHHCCCCCCCCCCEEEEEEECCCCCCCCC FSGVLLAIHSDGQLVIPIIVRVKDHWLGPIFLLLLGVMVSIGMSAYRTDGRNRDEIVVLV CCEEEEEEECCCCEEEEEEEEEHHCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHH SRIRTQMKADPELVKSFQVKINGYLIDVDTDLTNKRWDEAKQAVAKAQTTWDKWRKSRED HHHHHHHCCCHHHHHHHEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHH WLALSEFESSFLDLDNLTTDAPYVQTVGSYLENIKRQTADKENPEQLRKELNDLRQQLVR HHHHHHHHHHHHCHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH YLGGEAKLERFDNLRNELTGSAQQEQALRDISQYLQQELNNLSPTELEAFQRWEQEIDNE HHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH LKQLDQAIKQQQISNNEAQSNLSITSRGVSSTYPARLPNPVPDVQPLQLNPVGSARNLFL HHHHHHHHHHHHHCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHH FQLLSYTIAIFLLAGAGFRQLYVTQPTFGANLWTDYFALLAWGFGAEATRDAVTKTIREW HHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH KLPGLK CCCCCC >Mature Secondary Structure MMRGQKTMMVLLSLALNLVLVAPPVKAEPKVTITPSNLTVVGTKCPVFFYCPVLKRRLVL CCCCHHHHHHHHHHHHHHEEECCCCCCCCEEEEECCCEEEEECCCCCEEECHHHHHHHHH QTNQAIANLQILSLDLDRTDGTTVLQGSAINPILSTTSVEPNQPLTIPVEFNLNDAKSGE HCCHHHHEEEEEEEECCCCCCCEEEECCCCCCHHCCCCCCCCCCEEEEEEECCCCCCCCC FSGVLLAIHSDGQLVIPIIVRVKDHWLGPIFLLLLGVMVSIGMSAYRTDGRNRDEIVVLV CCEEEEEEECCCCEEEEEEEEEHHCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHH SRIRTQMKADPELVKSFQVKINGYLIDVDTDLTNKRWDEAKQAVAKAQTTWDKWRKSRED HHHHHHHCCCHHHHHHHEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHH WLALSEFESSFLDLDNLTTDAPYVQTVGSYLENIKRQTADKENPEQLRKELNDLRQQLVR HHHHHHHHHHHHCHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH YLGGEAKLERFDNLRNELTGSAQQEQALRDISQYLQQELNNLSPTELEAFQRWEQEIDNE HHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH LKQLDQAIKQQQISNNEAQSNLSITSRGVSSTYPARLPNPVPDVQPLQLNPVGSARNLFL HHHHHHHHHHHHHCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHH FQLLSYTIAIFLLAGAGFRQLYVTQPTFGANLWTDYFALLAWGFGAEATRDAVTKTIREW HHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH KLPGLK CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA