| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476311
Identifier: 113476311
GI number: 113476311
Start: 4199215
End: 4200150
Strand: Reverse
Name: 113476311
Synonym: Tery_2711
Alternate gene names: NA
Gene position: 4200150-4199215 (Counterclockwise)
Preceding gene: 113476317
Following gene: 113476310
Centisome position: 54.19
GC content: 35.26
Gene sequence:
>936_bases ATGACATTCTTTAATAAAGATGAGCAACTCAATATTCTGGGTAAAGATATTATAGAAGCAACCCAGTTAGAATTTTCAGA ATTAACTTCCGAGGCAATAGCTATAACTTGGTTAGTCTACAATTCACCAATAACCAGAAATATTCAGAATGCCACAGAGT TTTGGCAAAAGCAAGTGCGGGGTTGGAGCGATCGCGGTGATGAGAAGATGTATGCAGGAGGAATGGTCCATTTATTTTAC CTTGTGGCTATTTATGAATGGTTAGAGAAAGGAATGGTCAAAACTTCACCAGAGCTAGAAAGAGCAATTCGAGATATGAT TCTTTCTGCAAATCATGATGGGACCAGTCTAGTTGTAGATGTTTTAACTGGAACTACCAGTGGACCTGAATTATCACCGG GACCTTTTCAAACTTGGAAATATCAACGTAATTTTATCAACCGTTATTTTCAATCTCTCAAGTGGCCTGAATTAAAATCT ATTAATGTTAATCAAAAAACATGGTTTTATGGGCCTTATGGCCGAGAACGGATTTTCCAAGGACTATTGATGGAAAATCG AAATATACTTACAACTAATGCAACAGCTCGTCTATTACATAGTATTGTGGGTGGCATTGCAGTATCCCGTCAAGCATCAG GAAAAATAATGGATTTGTTACAGAAAAATCTTAGCCAACAAGATGCAAAATATGTAACCAAAAGTCAAACTATAGGGTTT TTAAAAGAAAGTCTTCCTCAAAATGCTAAGATATGGTCTAGAGAAATTGTGGATACTCATGTACATCACAATTTTGCTTA TATAGAGTTACCAAATCTTCTGCCATATCTTTTAGTTATATTTACAGAAGGCAAAGAGATTAGCAAGAATGAGAGGATAT TACCTTATATTTCTCAAAAGTTTGTAGAGGCAATGAAAAAATTGTCGCTAAAATGA
Upstream 100 bases:
>100_bases TGCATTCTCAAGAGCTATAAATTATTGATATTTACTATTACATTTATATTCAACATTCTAAGATAAACTTAGATGAAATC TCCTGTAACTGATAACTGAA
Downstream 100 bases:
>100_bases CTAAAAAATTAAGCTACGGTTCTAGGAAATTTCATTTACGTATTTAGGGCTAACATTTAAGCTATGGAAATCTTATTAGG AAACTCTTGTAATACAACTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 311; Mature: 310
Protein sequence:
>311_residues MTFFNKDEQLNILGKDIIEATQLEFSELTSEAIAITWLVYNSPITRNIQNATEFWQKQVRGWSDRGDEKMYAGGMVHLFY LVAIYEWLEKGMVKTSPELERAIRDMILSANHDGTSLVVDVLTGTTSGPELSPGPFQTWKYQRNFINRYFQSLKWPELKS INVNQKTWFYGPYGRERIFQGLLMENRNILTTNATARLLHSIVGGIAVSRQASGKIMDLLQKNLSQQDAKYVTKSQTIGF LKESLPQNAKIWSREIVDTHVHHNFAYIELPNLLPYLLVIFTEGKEISKNERILPYISQKFVEAMKKLSLK
Sequences:
>Translated_311_residues MTFFNKDEQLNILGKDIIEATQLEFSELTSEAIAITWLVYNSPITRNIQNATEFWQKQVRGWSDRGDEKMYAGGMVHLFY LVAIYEWLEKGMVKTSPELERAIRDMILSANHDGTSLVVDVLTGTTSGPELSPGPFQTWKYQRNFINRYFQSLKWPELKS INVNQKTWFYGPYGRERIFQGLLMENRNILTTNATARLLHSIVGGIAVSRQASGKIMDLLQKNLSQQDAKYVTKSQTIGF LKESLPQNAKIWSREIVDTHVHHNFAYIELPNLLPYLLVIFTEGKEISKNERILPYISQKFVEAMKKLSLK >Mature_310_residues TFFNKDEQLNILGKDIIEATQLEFSELTSEAIAITWLVYNSPITRNIQNATEFWQKQVRGWSDRGDEKMYAGGMVHLFYL VAIYEWLEKGMVKTSPELERAIRDMILSANHDGTSLVVDVLTGTTSGPELSPGPFQTWKYQRNFINRYFQSLKWPELKSI NVNQKTWFYGPYGRERIFQGLLMENRNILTTNATARLLHSIVGGIAVSRQASGKIMDLLQKNLSQQDAKYVTKSQTIGFL KESLPQNAKIWSREIVDTHVHHNFAYIELPNLLPYLLVIFTEGKEISKNERILPYISQKFVEAMKKLSLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35862; Mature: 35731
Theoretical pI: Translated: 9.45; Mature: 9.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFFNKDEQLNILGKDIIEATQLEFSELTSEAIAITWLVYNSPITRNIQNATEFWQKQVR CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCHHHHHHHHHHHHC GWSDRGDEKMYAGGMVHLFYLVAIYEWLEKGMVKTSPELERAIRDMILSANHDGTSLVVD CCCCCCCCHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEE VLTGTTSGPELSPGPFQTWKYQRNFINRYFQSLKWPELKSINVNQKTWFYGPYGRERIFQ EHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHH GLLMENRNILTTNATARLLHSIVGGIAVSRQASGKIMDLLQKNLSQQDAKYVTKSQTIGF HHHHCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LKESLPQNAKIWSREIVDTHVHHNFAYIELPNLLPYLLVIFTEGKEISKNERILPYISQK HHHHCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHEECCCCCCCCCCCHHHHHHH FVEAMKKLSLK HHHHHHHHCCC >Mature Secondary Structure TFFNKDEQLNILGKDIIEATQLEFSELTSEAIAITWLVYNSPITRNIQNATEFWQKQVR CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCHHHHHHHHHHHHC GWSDRGDEKMYAGGMVHLFYLVAIYEWLEKGMVKTSPELERAIRDMILSANHDGTSLVVD CCCCCCCCHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEE VLTGTTSGPELSPGPFQTWKYQRNFINRYFQSLKWPELKSINVNQKTWFYGPYGRERIFQ EHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHH GLLMENRNILTTNATARLLHSIVGGIAVSRQASGKIMDLLQKNLSQQDAKYVTKSQTIGF HHHHCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LKESLPQNAKIWSREIVDTHVHHNFAYIELPNLLPYLLVIFTEGKEISKNERILPYISQK HHHHCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHEECCCCCCCCCCCHHHHHHH FVEAMKKLSLK HHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA