| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113476185
Identifier: 113476185
GI number: 113476185
Start: 3973029
End: 3974042
Strand: Reverse
Name: 113476185
Synonym: Tery_2576
Alternate gene names: NA
Gene position: 3974042-3973029 (Counterclockwise)
Preceding gene: 113476189
Following gene: 113476183
Centisome position: 51.28
GC content: 40.83
Gene sequence:
>1014_bases ATGAGGGCTATGAAAATAACAACTTCCAAAAATCAAATCCATGTAGGTGTTTTAGGTTTCGGCGGTCTGGGGCAAGCTGC AGCTAGGGTACTTGCACCTAAACAAGAAATGGCCTTGGTTGCTGCTGCTGACCAAAAAGGTTATGTCTACAATTCTCAAG GATTAAATGCTGACCATTGTATGACTATGTATAATGACCAAGGGTCTTTAGGTTATTTAGAAACTGGTGGGGTTTTAAGT AATAAGAGTATTGAAGAATTAATTAAAGTAGCTGGTACTGTGGATGGTTATTTTTTGGCCCTTCCTAACTTACCTAATAC TTTTATGGCAAGTGTTGCTAAACAATTTATTGCTGCTGGTTGGCGGGGAGTATTAGTCGATGCTATTAAAAGAACGAGTG CGGTAGAACAATTGTTGGCCCTCAAAGATGAACTACAAGCTGCAGGTATTACTTATATGACAGGTTGTGGCGCAACTCCT GGTTTATTAACTGCAGCAGCAGCTATAGCAGCTCAGAGTTATGGGGAAATTCATAGTGTGAAAATTACTTTTGGAGTGGG TATTGCCAATTGGGAAGCTTACCGCGCCACAATTCGTGAGGATATTGGTCATTTACCCGGATATGATGTGGAAAAAGCTA AAGCCATGACTGATGCTGAGGTGGAAGCTTTGTTGGAAAGTACAAATGGTCTGTTGAATTTGCAGAACATGGAACATGCT GACGACATTATGTTGGAGTTGGCAGGAATTTGCGATCGCGATCGAGTAACAGTAGGAGGTATTGTTGATACTCGCAACCC GAAAAAACCTTTAAGTACAAATGTTCAGATAACTGGTCGCACTTTTGAAGGTAAAATTTCTACTCATACTTTTACATTAG GAGATGAAACAAGCATGGCGGCTAATGTTTGTGGTCCGGCATTTGGCTATTTCAAAGCAGGAGTCGGTTTACATCAAAGA GGTATTTATGGTTTATTTACTGCTGCTGAAGTTATGCCACAGTTTGTCCGCTAG
Upstream 100 bases:
>100_bases CTTAAATACAGTGGAAAGTGCTGTTGGTGATAACTAAAATGATTTCCAGAGTGATGCACCTTAGCAGATAATAAAAGTCT GTCCAGTTAAATTAAATACT
Downstream 100 bases:
>100_bases TGGTTTATCTTCTTAATGGGTGAAGTATTAATAGTGTGAGTTTTTTACTCACACTATAGTATTATGTCAAGTCAGGATGA ATAGTTATTGTATAGAACTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 337; Mature: 337
Protein sequence:
>337_residues MRAMKITTSKNQIHVGVLGFGGLGQAAARVLAPKQEMALVAAADQKGYVYNSQGLNADHCMTMYNDQGSLGYLETGGVLS NKSIEELIKVAGTVDGYFLALPNLPNTFMASVAKQFIAAGWRGVLVDAIKRTSAVEQLLALKDELQAAGITYMTGCGATP GLLTAAAAIAAQSYGEIHSVKITFGVGIANWEAYRATIREDIGHLPGYDVEKAKAMTDAEVEALLESTNGLLNLQNMEHA DDIMLELAGICDRDRVTVGGIVDTRNPKKPLSTNVQITGRTFEGKISTHTFTLGDETSMAANVCGPAFGYFKAGVGLHQR GIYGLFTAAEVMPQFVR
Sequences:
>Translated_337_residues MRAMKITTSKNQIHVGVLGFGGLGQAAARVLAPKQEMALVAAADQKGYVYNSQGLNADHCMTMYNDQGSLGYLETGGVLS NKSIEELIKVAGTVDGYFLALPNLPNTFMASVAKQFIAAGWRGVLVDAIKRTSAVEQLLALKDELQAAGITYMTGCGATP GLLTAAAAIAAQSYGEIHSVKITFGVGIANWEAYRATIREDIGHLPGYDVEKAKAMTDAEVEALLESTNGLLNLQNMEHA DDIMLELAGICDRDRVTVGGIVDTRNPKKPLSTNVQITGRTFEGKISTHTFTLGDETSMAANVCGPAFGYFKAGVGLHQR GIYGLFTAAEVMPQFVR >Mature_337_residues MRAMKITTSKNQIHVGVLGFGGLGQAAARVLAPKQEMALVAAADQKGYVYNSQGLNADHCMTMYNDQGSLGYLETGGVLS NKSIEELIKVAGTVDGYFLALPNLPNTFMASVAKQFIAAGWRGVLVDAIKRTSAVEQLLALKDELQAAGITYMTGCGATP GLLTAAAAIAAQSYGEIHSVKITFGVGIANWEAYRATIREDIGHLPGYDVEKAKAMTDAEVEALLESTNGLLNLQNMEHA DDIMLELAGICDRDRVTVGGIVDTRNPKKPLSTNVQITGRTFEGKISTHTFTLGDETSMAANVCGPAFGYFKAGVGLHQR GIYGLFTAAEVMPQFVR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35857; Mature: 35857
Theoretical pI: Translated: 6.17; Mature: 6.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRAMKITTSKNQIHVGVLGFGGLGQAAARVLAPKQEMALVAAADQKGYVYNSQGLNADHC CCCEEEECCCCEEEEEEEECCCHHHHHHHHHCCHHHEEEEEEECCCCEEECCCCCCHHHE MTMYNDQGSLGYLETGGVLSNKSIEELIKVAGTVDGYFLALPNLPNTFMASVAKQFIAAG EEEECCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCC WRGVLVDAIKRTSAVEQLLALKDELQAAGITYMTGCGATPGLLTAAAAIAAQSYGEIHSV CHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEE KITFGVGIANWEAYRATIREDIGHLPGYDVEKAKAMTDAEVEALLESTNGLLNLQNMEHA EEEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCHH DDIMLELAGICDRDRVTVGGIVDTRNPKKPLSTNVQITGRTFEGKISTHTFTLGDETSMA HHHHHHHHCCCCCCCEEECCEEECCCCCCCCCCCEEEEEEEEECEEEEEEEECCCCCCHH ANVCGPAFGYFKAGVGLHQRGIYGLFTAAEVMPQFVR HHHCCHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MRAMKITTSKNQIHVGVLGFGGLGQAAARVLAPKQEMALVAAADQKGYVYNSQGLNADHC CCCEEEECCCCEEEEEEEECCCHHHHHHHHHCCHHHEEEEEEECCCCEEECCCCCCHHHE MTMYNDQGSLGYLETGGVLSNKSIEELIKVAGTVDGYFLALPNLPNTFMASVAKQFIAAG EEEECCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCC WRGVLVDAIKRTSAVEQLLALKDELQAAGITYMTGCGATPGLLTAAAAIAAQSYGEIHSV CHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEE KITFGVGIANWEAYRATIREDIGHLPGYDVEKAKAMTDAEVEALLESTNGLLNLQNMEHA EEEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCHH DDIMLELAGICDRDRVTVGGIVDTRNPKKPLSTNVQITGRTFEGKISTHTFTLGDETSMA HHHHHHHHCCCCCCCEEECCEEECCCCCCCCCCCEEEEEEEEECEEEEEEEECCCCCCHH ANVCGPAFGYFKAGVGLHQRGIYGLFTAAEVMPQFVR HHHCCHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA