| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476164
Identifier: 113476164
GI number: 113476164
Start: 3933902
End: 3935035
Strand: Reverse
Name: 113476164
Synonym: Tery_2551
Alternate gene names: NA
Gene position: 3935035-3933902 (Counterclockwise)
Preceding gene: 113476165
Following gene: 113476163
Centisome position: 50.77
GC content: 42.15
Gene sequence:
>1134_bases ATGAAAATTAAGCATTCATGGCTATGGCAATGTAGTAAAAACTGTGCCACTCTTTTTTTGCTCTCTAGTTCCTGGATAGT ATTAAATCCAGCCAAGGCTAGTGCTGCAAATGAATGCCATCAAATCAGTACAAGTGAGACCTCTCCTATAACTTATGTTA TTACCTCAACCCCTGTGGATGGTGTTAGTAATGAAGAGCGGGTCATTCGGCTTTCTAGGGATTATTCAGTCACCTTTAAA TGTACTGATGGCTCAGGAGTGAATTTAACAAACGCTGATATTGACGTGGATCTGGATACAATTACCCTCCCTAGTCCAGC ACCTGCAAATTTAGATTTGGGTGACCCGGGGATCACCCATCAAGTTTCTGTGGGAAAAAACACCTCTTATACTGATTTAA AAGAAAATTTTACGGCGACTAACGATAGTGTAGATATTGTGTCTTCTAGTAGTAGTCAACCGGGGGACAATTTATCTTTA GATAGTAATGGTGAGATTAAAATAAATCTGAGGTCGACCTTTTTTTTACAGGGAGGCGCAGAGGAGTTTGCGGCAGGGGG CTATGAGACACAGTTCAGGATAACGGCGACTCCTACATCTTCGGGAACCCCGGGTAGTAATACTACTGTAATTTCTAAGA ATGTGGAAAAAGAATGCAGTTTGCAAAATAGTAGTGAATATACAGAGACAGGTAACCCGAAGGCTTATGTTACAACCACA TCGTCTGCAGGACTTCCCGAGCCAAGGGCCAGGATACTAGAAGCTTCTGATTCTGTCGGTTTTGATTGTAATACCGCTGA TGTTGACTATTCGGTGGAGATGACCAACTTAACTGCTCCAATATTTAGCAATAGTTCAAACATCGATCTCCTTCAGGGGG GAGGGAGTAATGGTGTTGATCATAAAGTCAAAACTAGAAAAACACATCCTTCTAGTAATACAACAACGGAACTACAAGCA CTGACTCAAGAACTTACCACTGGTATTATTGATCAGAGGACAAGGGAGAGTACCGATGATAATGGAGACATTGAGATTGA GGTTACTTCCCGCTTTGACACTACAGGAGCGGCAGAAGAGTTGGGAGCAGGAGATTATTCCGCAACTTTTACCGTGACTG TCACAGCTAATTAG
Upstream 100 bases:
>100_bases AGATTGAAAAGGGAGTGTTGGTCATCTGATCATCATTTCCTTTTCCATGGGAATTTCAATGTATATAAGTTTTCAACTAA TCTACAATTAAGTAGAAATA
Downstream 100 bases:
>100_bases GATAGATGGGTGATGAAATTATTTAAAAGTTTTTTATGGCAAAGCTTGTTAGGGGCAGCGATCGCCTCTGTCATGGCATT GCCTCAGGCAGTGCAAGCTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 377; Mature: 377
Protein sequence:
>377_residues MKIKHSWLWQCSKNCATLFLLSSSWIVLNPAKASAANECHQISTSETSPITYVITSTPVDGVSNEERVIRLSRDYSVTFK CTDGSGVNLTNADIDVDLDTITLPSPAPANLDLGDPGITHQVSVGKNTSYTDLKENFTATNDSVDIVSSSSSQPGDNLSL DSNGEIKINLRSTFFLQGGAEEFAAGGYETQFRITATPTSSGTPGSNTTVISKNVEKECSLQNSSEYTETGNPKAYVTTT SSAGLPEPRARILEASDSVGFDCNTADVDYSVEMTNLTAPIFSNSSNIDLLQGGGSNGVDHKVKTRKTHPSSNTTTELQA LTQELTTGIIDQRTRESTDDNGDIEIEVTSRFDTTGAAEELGAGDYSATFTVTVTAN
Sequences:
>Translated_377_residues MKIKHSWLWQCSKNCATLFLLSSSWIVLNPAKASAANECHQISTSETSPITYVITSTPVDGVSNEERVIRLSRDYSVTFK CTDGSGVNLTNADIDVDLDTITLPSPAPANLDLGDPGITHQVSVGKNTSYTDLKENFTATNDSVDIVSSSSSQPGDNLSL DSNGEIKINLRSTFFLQGGAEEFAAGGYETQFRITATPTSSGTPGSNTTVISKNVEKECSLQNSSEYTETGNPKAYVTTT SSAGLPEPRARILEASDSVGFDCNTADVDYSVEMTNLTAPIFSNSSNIDLLQGGGSNGVDHKVKTRKTHPSSNTTTELQA LTQELTTGIIDQRTRESTDDNGDIEIEVTSRFDTTGAAEELGAGDYSATFTVTVTAN >Mature_377_residues MKIKHSWLWQCSKNCATLFLLSSSWIVLNPAKASAANECHQISTSETSPITYVITSTPVDGVSNEERVIRLSRDYSVTFK CTDGSGVNLTNADIDVDLDTITLPSPAPANLDLGDPGITHQVSVGKNTSYTDLKENFTATNDSVDIVSSSSSQPGDNLSL DSNGEIKINLRSTFFLQGGAEEFAAGGYETQFRITATPTSSGTPGSNTTVISKNVEKECSLQNSSEYTETGNPKAYVTTT SSAGLPEPRARILEASDSVGFDCNTADVDYSVEMTNLTAPIFSNSSNIDLLQGGGSNGVDHKVKTRKTHPSSNTTTELQA LTQELTTGIIDQRTRESTDDNGDIEIEVTSRFDTTGAAEELGAGDYSATFTVTVTAN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40167; Mature: 40167
Theoretical pI: Translated: 4.20; Mature: 4.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIKHSWLWQCSKNCATLFLLSSSWIVLNPAKASAANECHQISTSETSPITYVITSTPVD CCCCCHHHHHHCCCCEEEEEEECCEEEEECCCCCCHHHHHCCCCCCCCCEEEEEECCCCC GVSNEERVIRLSRDYSVTFKCTDGSGVNLTNADIDVDLDTITLPSPAPANLDLGDPGITH CCCCCCEEEEEECCEEEEEEECCCCCCEEECCCEEEEEEEEECCCCCCCCCCCCCCCCEE QVSVGKNTSYTDLKENFTATNDSVDIVSSSSSQPGDNLSLDSNGEIKINLRSTFFLQGGA EEEECCCCCCCHHHHCCCCCCCCEEEEECCCCCCCCCCEECCCCEEEEEEEEEEEEECCH EEFAAGGYETQFRITATPTSSGTPGSNTTVISKNVEKECSLQNSSEYTETGNPKAYVTTT HHHHCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCHHHCCCCCCCCCCCCCCEEEEEEC SSAGLPEPRARILEASDSVGFDCNTADVDYSVEMTNLTAPIFSNSSNIDLLQGGGSNGVD CCCCCCCHHHHHEECCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCEEEEECCCCCCCC HKVKTRKTHPSSNTTTELQALTQELTTGIIDQRTRESTDDNGDIEIEVTSRFDTTGAAEE CCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCHHH LGAGDYSATFTVTVTAN HCCCCCCEEEEEEEEEC >Mature Secondary Structure MKIKHSWLWQCSKNCATLFLLSSSWIVLNPAKASAANECHQISTSETSPITYVITSTPVD CCCCCHHHHHHCCCCEEEEEEECCEEEEECCCCCCHHHHHCCCCCCCCCEEEEEECCCCC GVSNEERVIRLSRDYSVTFKCTDGSGVNLTNADIDVDLDTITLPSPAPANLDLGDPGITH CCCCCCEEEEEECCEEEEEEECCCCCCEEECCCEEEEEEEEECCCCCCCCCCCCCCCCEE QVSVGKNTSYTDLKENFTATNDSVDIVSSSSSQPGDNLSLDSNGEIKINLRSTFFLQGGA EEEECCCCCCCHHHHCCCCCCCCEEEEECCCCCCCCCCEECCCCEEEEEEEEEEEEECCH EEFAAGGYETQFRITATPTSSGTPGSNTTVISKNVEKECSLQNSSEYTETGNPKAYVTTT HHHHCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCHHHCCCCCCCCCCCCCCEEEEEEC SSAGLPEPRARILEASDSVGFDCNTADVDYSVEMTNLTAPIFSNSSNIDLLQGGGSNGVD CCCCCCCHHHHHEECCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCEEEEECCCCCCCC HKVKTRKTHPSSNTTTELQALTQELTTGIIDQRTRESTDDNGDIEIEVTSRFDTTGAAEE CCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCHHH LGAGDYSATFTVTVTAN HCCCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA