| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475818
Identifier: 113475818
GI number: 113475818
Start: 3397309
End: 3398085
Strand: Reverse
Name: 113475818
Synonym: Tery_2174
Alternate gene names: NA
Gene position: 3398085-3397309 (Counterclockwise)
Preceding gene: 113475819
Following gene: 113475817
Centisome position: 43.85
GC content: 40.67
Gene sequence:
>777_bases ATGAATTCCCAGATCAAAAAACTGGATAGTTCGAGATTAGTTGATTCACAACCTGCTCTGAATCCTTACGTATTCTCATT CAAAGTACCATCTAAAAAATTTTCATTGGCTGCTTTGAGTAAGCTTAATTTATGGCAAACAGTAGGAGAAATGGTGAGTA GTGGCAATAAGTGGCAGCTATCTCTAATTGCTATTGGTAGTGCTAGCAGTATTATCTATCCCCATGTGCCTTTAGTCGGT TTTGCTGCGGTATATGGTAACACTTTGACTCGCAAAAAAGCGCTTATTACTGTTACAAGTATCTGGTTTGCCAATCAGCT TTATGGTTTCACCATTCGCCAATATCCCTGTACTTTTGAGTCTTTTAGTTGTGGGCTAGTAATGGGTTTGGGAACACTGC TGATTACTTGGCTAATTACCCTACGACTAAAATTTAGCCCTCGTAGTTTTCGGGGTTATTTACTGTGGTTAGCGATCGCT GTTGTCGGTGGTTATGCTATTTATCAGGGCAGTATCGTGTTGATTGCTCTGTTAACGGGTGGACATGGGTTTAGTTCCAC AATTTTTAGGGGTATTTTCCTAAAAGATACTGTCTGGGCTGTTGTCTTATCAGCAATTCACTCTAGTTTTGTCTGGCTGT TAATACAGACTATACCAAACTACTCTTATCCTTCTTTACCTCTTACTCAGGCTATCGTCCCCCTGGTTGTGGACGAAAAG GTTAGCTACACAAAAAACTTGCTCACAAGCAAGAAGCTGTGCACTGCCGAAAGTTGA
Upstream 100 bases:
>100_bases TTGTCAAGACAATTGGGTATTATTGGCTCAGTCCTATGCTAGACTACTTAAAAATTGCTATAATACTACTAAGTGATGTT CGTAGCAAAAGAACTCAAAG
Downstream 100 bases:
>100_bases TATTATATACAGAACATTATAAATAAATATTACGGTTTTCTTCATGTACTTATATTACGCTCTTGGATTTATATTATTAC TCGTAGCCCTCGGCATAGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 258; Mature: 258
Protein sequence:
>258_residues MNSQIKKLDSSRLVDSQPALNPYVFSFKVPSKKFSLAALSKLNLWQTVGEMVSSGNKWQLSLIAIGSASSIIYPHVPLVG FAAVYGNTLTRKKALITVTSIWFANQLYGFTIRQYPCTFESFSCGLVMGLGTLLITWLITLRLKFSPRSFRGYLLWLAIA VVGGYAIYQGSIVLIALLTGGHGFSSTIFRGIFLKDTVWAVVLSAIHSSFVWLLIQTIPNYSYPSLPLTQAIVPLVVDEK VSYTKNLLTSKKLCTAES
Sequences:
>Translated_258_residues MNSQIKKLDSSRLVDSQPALNPYVFSFKVPSKKFSLAALSKLNLWQTVGEMVSSGNKWQLSLIAIGSASSIIYPHVPLVG FAAVYGNTLTRKKALITVTSIWFANQLYGFTIRQYPCTFESFSCGLVMGLGTLLITWLITLRLKFSPRSFRGYLLWLAIA VVGGYAIYQGSIVLIALLTGGHGFSSTIFRGIFLKDTVWAVVLSAIHSSFVWLLIQTIPNYSYPSLPLTQAIVPLVVDEK VSYTKNLLTSKKLCTAES >Mature_258_residues MNSQIKKLDSSRLVDSQPALNPYVFSFKVPSKKFSLAALSKLNLWQTVGEMVSSGNKWQLSLIAIGSASSIIYPHVPLVG FAAVYGNTLTRKKALITVTSIWFANQLYGFTIRQYPCTFESFSCGLVMGLGTLLITWLITLRLKFSPRSFRGYLLWLAIA VVGGYAIYQGSIVLIALLTGGHGFSSTIFRGIFLKDTVWAVVLSAIHSSFVWLLIQTIPNYSYPSLPLTQAIVPLVVDEK VSYTKNLLTSKKLCTAES
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28448; Mature: 28448
Theoretical pI: Translated: 10.27; Mature: 10.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSQIKKLDSSRLVDSQPALNPYVFSFKVPSKKFSLAALSKLNLWQTVGEMVSSGNKWQL CCCHHHHCCHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE SLIAIGSASSIIYPHVPLVGFAAVYGNTLTRKKALITVTSIWFANQLYGFTIRQYPCTFE EEEEECCCCCEEECCCHHHHHHHHHCCCHHHHHHEEEEHHHHHHHHHHCEEEEECCCCCC SFSCGLVMGLGTLLITWLITLRLKFSPRSFRGYLLWLAIAVVGGYAIYQGSIVLIALLTG CCCCHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHCHHHCCCCEEEEEEEEC GHGFSSTIFRGIFLKDTVWAVVLSAIHSSFVWLLIQTIPNYSYPSLPLTQAIVPLVVDEK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCH VSYTKNLLTSKKLCTAES HHHHHHHHHHHCCCCCCC >Mature Secondary Structure MNSQIKKLDSSRLVDSQPALNPYVFSFKVPSKKFSLAALSKLNLWQTVGEMVSSGNKWQL CCCHHHHCCHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE SLIAIGSASSIIYPHVPLVGFAAVYGNTLTRKKALITVTSIWFANQLYGFTIRQYPCTFE EEEEECCCCCEEECCCHHHHHHHHHCCCHHHHHHEEEEHHHHHHHHHHCEEEEECCCCCC SFSCGLVMGLGTLLITWLITLRLKFSPRSFRGYLLWLAIAVVGGYAIYQGSIVLIALLTG CCCCHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHCHHHCCCCEEEEEEEEC GHGFSSTIFRGIFLKDTVWAVVLSAIHSSFVWLLIQTIPNYSYPSLPLTQAIVPLVVDEK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCH VSYTKNLLTSKKLCTAES HHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA