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The map label for this gene is 113475558

Identifier: 113475558

GI number: 113475558

Start: 2897004

End: 2898995

Strand: Reverse

Name: 113475558

Synonym: Tery_1890

Alternate gene names: NA

Gene position: 2898995-2897004 (Counterclockwise)

Preceding gene: 113475559

Following gene: 113475548

Centisome position: 37.41

GC content: 42.62

Gene sequence:

>1992_bases
ATGGCGAAGAAAACTAAAAGCAGTATCACAAATATAGTTGATCGCAAAGGAGGCTTAAATCCAGATGTAGTAGATGTAAC
TCTTGTACCTGGAGACAATGTGACCTTTGATATCACTGCCAAAGTTACTAAAAAAAGTTCCACAAAATTACCTCTAGACC
TAGTTTTTCTTAGCGATCTTTCTGGTTCTTATGGGGATGACCTGCCAGTATTACAGGATTTAGTTCCCAAGCTAGTTTCC
TCAGTTCGAGACATCCAACCAAACAGTCAATTCGGTCTAGCATCATATATAGATAAACCCAAAGATCCCTTTGGCGGCCC
TAAAGATTTTGTGTATAGAATGGAGTCAGCGATCACTAAATCTCGCACTGATTTTCAGAAAGCGATGGATGACTTGAAAA
TTGGTAACGGTAATGACGGTCCTGAGGCACAGCTTGAGGCATTGATGCAGTTAGCTCTCAGAGAAAAAGAGATAGGCTTC
CGTAAGAAATCTCGGCGCGTTGTCGTTCTTTCTACAGATGCTAACTACCACAAAGCAGGAGACGGCAAAAAAGCAGGTAT
CAAAACTCCCAATAATGGGGATACAGTTCTTGATGGTAAGCCAGCCGGTACTGGGGAAGACTATCCCAGTATCGATCAAG
TAAGAGATGCTTTACAAGAAGCCGGCATTGTTCCCATTTTTGCAGTCACCGGCAACCAAGTCAGAAACTACAAAAAACTC
GTAGATAAATTGGGGTTTGGTACGGTAGAAAGGTTATCGCGGGACAGTTCTAACTTAGTTAAGGTAGTAACAGAGGGCTT
GGAGGAAGTCTTTAGTGACTTAACGATAGTACCCCAAAGCGATGAGTTTGGTTACATTAAAAGTATTAAGCCTACGACTT
ACGAAAATGTCCGCCCTGGGCAAAGTCGGACTTTTGAAGTTAAACTGGGTATTACAGATCTCGATGCTAGCCAAAAAGAC
CGTCTTTCCCTGGAAGTATTGGGTTATGGGGAAACCAAAGTTAATGTTACTCCTATTGTTAACACCAAGCCCATCGCAAG
CAATGACAACCTCGCCACTAATGCAGGAAGCAAATTGGTTATTAAACCAAAAGAGCTATTGGCAAACGATACGGATAAAG
ACGGGGATAAGTTAAGTATTAGCAAGGTAGGTAAAGCTTCAAATGGCAAAGTGATCCTGGGTAAAAATGGTAAGGTAACT
TTTACCCCCGATAAAGACTTTACGGGCAAGGCCAGTTTTGAATATACCATCGACGACGGTAATAAAGGCCGTGATAGCGC
GACTGTTACAGTTCAAGTCAGAGATAATTCTGACCCCATCGCTAAAGACGACAAGGTGTTTTTTGTCAGACCCAAGCTCT
TTCACGCTATCCAAGCAAAAAAGTTACTGAAAAATGATCAAGATAAAGATGGCGACAAGTTGACTATTATTAAAGTCAGT
AATGCAACCAAGGGCGAAGTAGAGTTAACTAAAAGCGGTGAAATAACTTTTACCCCTAGTGGAAAGCATAAGAAGTTCAG
CAAGGGGAGTTTTGAGTATACTATCAGCGACGGCAAAGGCGGTACAGATACAGCCAAAGTGATGCTGAAAAGAGTTGGGG
ACTTGCCAAGCTCTAAGCGTAGCGCTGGTTCTGAGAAGAGAGACTCCCTGACTGGAAATATAGATGACAAGGCACCAGGG
ATCCCTCTTGGTACAGTTGTTGATCCTCTCACCCAAAGCAGTGATATTGGCTTCAAGAATGGAGGCAAAGTTGATCAAAA
CGACTATTACAACTTTGTTGTTCCGGAGCCTAGTTTCGTCAGCATCAAACTTGACGGTCTCAGGAGCAACGCTAACCTAG
AACTATACGATAGCGACAAAGTATCCCTTGATAGTTCTACTAACTCCGGCAATGCTCCTGAAGAGATTAACACCTTCTTG
TTTCCCGATACCTATGTGGTTGGCGTATTCGATCAAGGTAGTGGAACTCCTTACAACCTGTCTATCTTATAA

Upstream 100 bases:

>100_bases
GTACGGAGCGTAGGTCGCTCGGCAAAGTTAGGGCGTGGGTTGCACACCCTAACTTTTTTTAATGTTTCATTATTATTTTG
AATGACTATAAATAAAAGTA

Downstream 100 bases:

>100_bases
CTATTATGGAGCGTAAATCACGCGACCAAGCTAGGGCTTACGTCCCAGGCGCTAACCGTCTTTTACAGTAGTTTTCATGT
TAGTAGACTACTGTAAGGAC

Product: integrin, beta chain-like

Products: NA

Alternate protein names: Proprotein Convertase P; Fibronectin Type III Domain-Containing Protein; Outer Membrane Adhesin Like Protein; Vcbs Repeat Domain Protein; Hyalin Domain-Containing Protein; RTX xin; VCBS Protein; Ig Family Protein; Peptidase-Like; Fibronectin Type III; RTX xin Exported Protein; Vcbs Repeat Protein; Type 1 Secretion Target Domain-Containing Protein; Cell-Adhesion Protein; Potential RTX Family Protein; Fibronectin Type III Domain Protein; Ompa Domain Protein; YVTN Beta-Propeller Repeat-Containing Protein; Hemolysin; PA14 Domain Protein; Type V Secretory Pathway Adhesin AidA; Hemagglutinin/Hemolysin-Related Protein; Large Exoprotein; Polyhydroxyalkanoate Synthesis Repressor PhaR; PKD Domain Containing Protein; Copper Amine Oxidase Domain Protein; Conserved Repeat Domain Protein; Parallel Beta-Helix Repeat Protein; Type I Secretion Target Repeat Protein; FG-GAP Repeat Domain Protein; RHS/YD Repeat-Containing Protein; Type V Secretory Pathway; Cadherin; Integrin Beta Chain-Like

Number of amino acids: Translated: 663; Mature: 662

Protein sequence:

>663_residues
MAKKTKSSITNIVDRKGGLNPDVVDVTLVPGDNVTFDITAKVTKKSSTKLPLDLVFLSDLSGSYGDDLPVLQDLVPKLVS
SVRDIQPNSQFGLASYIDKPKDPFGGPKDFVYRMESAITKSRTDFQKAMDDLKIGNGNDGPEAQLEALMQLALREKEIGF
RKKSRRVVVLSTDANYHKAGDGKKAGIKTPNNGDTVLDGKPAGTGEDYPSIDQVRDALQEAGIVPIFAVTGNQVRNYKKL
VDKLGFGTVERLSRDSSNLVKVVTEGLEEVFSDLTIVPQSDEFGYIKSIKPTTYENVRPGQSRTFEVKLGITDLDASQKD
RLSLEVLGYGETKVNVTPIVNTKPIASNDNLATNAGSKLVIKPKELLANDTDKDGDKLSISKVGKASNGKVILGKNGKVT
FTPDKDFTGKASFEYTIDDGNKGRDSATVTVQVRDNSDPIAKDDKVFFVRPKLFHAIQAKKLLKNDQDKDGDKLTIIKVS
NATKGEVELTKSGEITFTPSGKHKKFSKGSFEYTISDGKGGTDTAKVMLKRVGDLPSSKRSAGSEKRDSLTGNIDDKAPG
IPLGTVVDPLTQSSDIGFKNGGKVDQNDYYNFVVPEPSFVSIKLDGLRSNANLELYDSDKVSLDSSTNSGNAPEEINTFL
FPDTYVVGVFDQGSGTPYNLSIL

Sequences:

>Translated_663_residues
MAKKTKSSITNIVDRKGGLNPDVVDVTLVPGDNVTFDITAKVTKKSSTKLPLDLVFLSDLSGSYGDDLPVLQDLVPKLVS
SVRDIQPNSQFGLASYIDKPKDPFGGPKDFVYRMESAITKSRTDFQKAMDDLKIGNGNDGPEAQLEALMQLALREKEIGF
RKKSRRVVVLSTDANYHKAGDGKKAGIKTPNNGDTVLDGKPAGTGEDYPSIDQVRDALQEAGIVPIFAVTGNQVRNYKKL
VDKLGFGTVERLSRDSSNLVKVVTEGLEEVFSDLTIVPQSDEFGYIKSIKPTTYENVRPGQSRTFEVKLGITDLDASQKD
RLSLEVLGYGETKVNVTPIVNTKPIASNDNLATNAGSKLVIKPKELLANDTDKDGDKLSISKVGKASNGKVILGKNGKVT
FTPDKDFTGKASFEYTIDDGNKGRDSATVTVQVRDNSDPIAKDDKVFFVRPKLFHAIQAKKLLKNDQDKDGDKLTIIKVS
NATKGEVELTKSGEITFTPSGKHKKFSKGSFEYTISDGKGGTDTAKVMLKRVGDLPSSKRSAGSEKRDSLTGNIDDKAPG
IPLGTVVDPLTQSSDIGFKNGGKVDQNDYYNFVVPEPSFVSIKLDGLRSNANLELYDSDKVSLDSSTNSGNAPEEINTFL
FPDTYVVGVFDQGSGTPYNLSIL
>Mature_662_residues
AKKTKSSITNIVDRKGGLNPDVVDVTLVPGDNVTFDITAKVTKKSSTKLPLDLVFLSDLSGSYGDDLPVLQDLVPKLVSS
VRDIQPNSQFGLASYIDKPKDPFGGPKDFVYRMESAITKSRTDFQKAMDDLKIGNGNDGPEAQLEALMQLALREKEIGFR
KKSRRVVVLSTDANYHKAGDGKKAGIKTPNNGDTVLDGKPAGTGEDYPSIDQVRDALQEAGIVPIFAVTGNQVRNYKKLV
DKLGFGTVERLSRDSSNLVKVVTEGLEEVFSDLTIVPQSDEFGYIKSIKPTTYENVRPGQSRTFEVKLGITDLDASQKDR
LSLEVLGYGETKVNVTPIVNTKPIASNDNLATNAGSKLVIKPKELLANDTDKDGDKLSISKVGKASNGKVILGKNGKVTF
TPDKDFTGKASFEYTIDDGNKGRDSATVTVQVRDNSDPIAKDDKVFFVRPKLFHAIQAKKLLKNDQDKDGDKLTIIKVSN
ATKGEVELTKSGEITFTPSGKHKKFSKGSFEYTISDGKGGTDTAKVMLKRVGDLPSSKRSAGSEKRDSLTGNIDDKAPGI
PLGTVVDPLTQSSDIGFKNGGKVDQNDYYNFVVPEPSFVSIKLDGLRSNANLELYDSDKVSLDSSTNSGNAPEEINTFLF
PDTYVVGVFDQGSGTPYNLSIL

Specific function: Unknown

COG id: COG2931

COG function: function code Q; RTX toxins and related Ca2+-binding proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI188595677, Length=366, Percent_Identity=30.8743169398907, Blast_Score=136, Evalue=7e-32,
Organism=Homo sapiens, GI89191865, Length=366, Percent_Identity=30.8743169398907, Blast_Score=136, Evalue=7e-32,
Organism=Homo sapiens, GI4504777, Length=348, Percent_Identity=29.5977011494253, Blast_Score=126, Evalue=5e-29,
Organism=Homo sapiens, GI47078292, Length=318, Percent_Identity=28.9308176100629, Blast_Score=122, Evalue=8e-28,
Organism=Homo sapiens, GI9625002, Length=278, Percent_Identity=29.4964028776978, Blast_Score=122, Evalue=1e-27,
Organism=Homo sapiens, GI20127446, Length=319, Percent_Identity=28.5266457680251, Blast_Score=119, Evalue=1e-26,
Organism=Homo sapiens, GI4504779, Length=283, Percent_Identity=28.6219081272085, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI19743819, Length=276, Percent_Identity=29.3478260869565, Blast_Score=109, Evalue=8e-24,
Organism=Homo sapiens, GI19743813, Length=276, Percent_Identity=29.3478260869565, Blast_Score=109, Evalue=9e-24,
Organism=Homo sapiens, GI19743823, Length=276, Percent_Identity=29.3478260869565, Blast_Score=109, Evalue=9e-24,
Organism=Homo sapiens, GI54607033, Length=314, Percent_Identity=26.1146496815287, Blast_Score=106, Evalue=8e-23,
Organism=Homo sapiens, GI54607035, Length=314, Percent_Identity=26.1146496815287, Blast_Score=105, Evalue=9e-23,
Organism=Homo sapiens, GI54607027, Length=314, Percent_Identity=26.1146496815287, Blast_Score=105, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17554380, Length=362, Percent_Identity=28.7292817679558, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24640486, Length=297, Percent_Identity=29.6296296296296, Blast_Score=136, Evalue=5e-32,
Organism=Drosophila melanogaster, GI24585563, Length=262, Percent_Identity=30.9160305343511, Blast_Score=115, Evalue=7e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 71784; Mature: 71653

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS50234 VWFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKTKSSITNIVDRKGGLNPDVVDVTLVPGDNVTFDITAKVTKKSSTKLPLDLVFLSDL
CCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEEEEECCCCCCCCEEEEEEECC
SGSYGDDLPVLQDLVPKLVSSVRDIQPNSQFGLASYIDKPKDPFGGPKDFVYRMESAITK
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHH
SRTDFQKAMDDLKIGNGNDGPEAQLEALMQLALREKEIGFRKKSRRVVVLSTDANYHKAG
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC
DGKKAGIKTPNNGDTVLDGKPAGTGEDYPSIDQVRDALQEAGIVPIFAVTGNQVRNYKKL
CCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
VDKLGFGTVERLSRDSSNLVKVVTEGLEEVFSDLTIVPQSDEFGYIKSIKPTTYENVRPG
HHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCEEECCCCCCCCCCCCC
QSRTFEVKLGITDLDASQKDRLSLEVLGYGETKVNVTPIVNTKPIASNDNLATNAGSKLV
CCEEEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCEEE
IKPKELLANDTDKDGDKLSISKVGKASNGKVILGKNGKVTFTPDKDFTGKASFEYTIDDG
EECHHHHCCCCCCCCCEEEHHHCCCCCCCEEEECCCCEEEECCCCCCCCCCEEEEEECCC
NKGRDSATVTVQVRDNSDPIAKDDKVFFVRPKLFHAIQAKKLLKNDQDKDGDKLTIIKVS
CCCCCCEEEEEEEECCCCCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCCCEEEEEEEC
NATKGEVELTKSGEITFTPSGKHKKFSKGSFEYTISDGKGGTDTAKVMLKRVGDLPSSKR
CCCCCEEEEECCCCEEECCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCHH
SAGSEKRDSLTGNIDDKAPGIPLGTVVDPLTQSSDIGFKNGGKVDQNDYYNFVVPEPSFV
HCCCCHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEE
SIKLDGLRSNANLELYDSDKVSLDSSTNSGNAPEEINTFLFPDTYVVGVFDQGSGTPYNL
EEEEECCCCCCCEEEEECCCEEECCCCCCCCCHHHCCEEECCCEEEEEEEECCCCCCEEE
SIL
EEC
>Mature Secondary Structure 
AKKTKSSITNIVDRKGGLNPDVVDVTLVPGDNVTFDITAKVTKKSSTKLPLDLVFLSDL
CCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEEEEECCCCCCCCEEEEEEECC
SGSYGDDLPVLQDLVPKLVSSVRDIQPNSQFGLASYIDKPKDPFGGPKDFVYRMESAITK
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHH
SRTDFQKAMDDLKIGNGNDGPEAQLEALMQLALREKEIGFRKKSRRVVVLSTDANYHKAG
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC
DGKKAGIKTPNNGDTVLDGKPAGTGEDYPSIDQVRDALQEAGIVPIFAVTGNQVRNYKKL
CCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
VDKLGFGTVERLSRDSSNLVKVVTEGLEEVFSDLTIVPQSDEFGYIKSIKPTTYENVRPG
HHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCEEECCCCCCCCCCCCC
QSRTFEVKLGITDLDASQKDRLSLEVLGYGETKVNVTPIVNTKPIASNDNLATNAGSKLV
CCEEEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCEEE
IKPKELLANDTDKDGDKLSISKVGKASNGKVILGKNGKVTFTPDKDFTGKASFEYTIDDG
EECHHHHCCCCCCCCCEEEHHHCCCCCCCEEEECCCCEEEECCCCCCCCCCEEEEEECCC
NKGRDSATVTVQVRDNSDPIAKDDKVFFVRPKLFHAIQAKKLLKNDQDKDGDKLTIIKVS
CCCCCCEEEEEEEECCCCCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCCCEEEEEEEC
NATKGEVELTKSGEITFTPSGKHKKFSKGSFEYTISDGKGGTDTAKVMLKRVGDLPSSKR
CCCCCEEEEECCCCEEECCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCHH
SAGSEKRDSLTGNIDDKAPGIPLGTVVDPLTQSSDIGFKNGGKVDQNDYYNFVVPEPSFV
HCCCCHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEE
SIKLDGLRSNANLELYDSDKVSLDSSTNSGNAPEEINTFLFPDTYVVGVFDQGSGTPYNL
EEEEECCCCCCCEEEEECCCEEECCCCCCCCCHHHCCEEECCCEEEEEEEECCCCCCEEE
SIL
EEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA