| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475493
Identifier: 113475493
GI number: 113475493
Start: 2785682
End: 2786209
Strand: Reverse
Name: 113475493
Synonym: Tery_1824
Alternate gene names: NA
Gene position: 2786209-2785682 (Counterclockwise)
Preceding gene: 113475495
Following gene: 113475492
Centisome position: 35.95
GC content: 37.31
Gene sequence:
>528_bases ATGGAAACAACAGAAAAAAATTCCTCTAACCTAATTCAGAAAATGCTTAATATTATAGCCCTCTTATTAGTAATAATTCT CATTGTTGTCGGAATAAATATTGCCACTTCTGGCAAACTCACTTTATTTGCAGGTACTAGACCTGATAATATTGGTGTAA ACTCTGGACGTCTTGCACCTTGTCCTGGTAGTCCAAATTGTGTGAGTAGTTATAGCCAAGATGTAGAACATGGTATTGCT TCTCTGAGTTATGACTCTGAACCGCAGATGGCGATCGCTAATTTAAAACAAATAATTGAATCAATGCCTCGAACTAATAT TGTAAAGGAAGAAGAGAATTATTTGTATGCTGAATTTGCTACGAAAATTATGGGCTATGTGGATGATGTCGAGTTTTATG TGGATCAAGAAGCTAATGCTATTCAAGTCCGCTCTGCTTCTCGTCTGGGACAATCAGATCTGGGTGTTAACCGGGAACGA GTCGAAACTATTAGAGAAAAGCTGAAGGAACTCAAAACCAATACTTAG
Upstream 100 bases:
>100_bases GTCTTTCATAATTTTTTTTGCTTTAGAGCCACAATAATTGTTATGATTGGGGTTAAGATAATACTTGGTAAACTTAACCA AATTATTTCTTTGATAGACT
Downstream 100 bases:
>100_bases CAAAGGTTAAAACCTAGTACCTTGCCTCAAGCCATAGCTCCAACTCACAATAAGCAATTAAGTTGAAATTTGGTTTAATA ATTATTGTATAGTTCAGGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 175; Mature: 175
Protein sequence:
>175_residues METTEKNSSNLIQKMLNIIALLLVIILIVVGINIATSGKLTLFAGTRPDNIGVNSGRLAPCPGSPNCVSSYSQDVEHGIA SLSYDSEPQMAIANLKQIIESMPRTNIVKEEENYLYAEFATKIMGYVDDVEFYVDQEANAIQVRSASRLGQSDLGVNRER VETIREKLKELKTNT
Sequences:
>Translated_175_residues METTEKNSSNLIQKMLNIIALLLVIILIVVGINIATSGKLTLFAGTRPDNIGVNSGRLAPCPGSPNCVSSYSQDVEHGIA SLSYDSEPQMAIANLKQIIESMPRTNIVKEEENYLYAEFATKIMGYVDDVEFYVDQEANAIQVRSASRLGQSDLGVNRER VETIREKLKELKTNT >Mature_175_residues METTEKNSSNLIQKMLNIIALLLVIILIVVGINIATSGKLTLFAGTRPDNIGVNSGRLAPCPGSPNCVSSYSQDVEHGIA SLSYDSEPQMAIANLKQIIESMPRTNIVKEEENYLYAEFATKIMGYVDDVEFYVDQEANAIQVRSASRLGQSDLGVNRER VETIREKLKELKTNT
Specific function: Unknown
COG id: COG4446
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19310; Mature: 19310
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METTEKNSSNLIQKMLNIIALLLVIILIVVGINIATSGKLTLFAGTRPDNIGVNSGRLAP CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCC CPGSPNCVSSYSQDVEHGIASLSYDSEPQMAIANLKQIIESMPRTNIVKEEENYLYAEFA CCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH TKIMGYVDDVEFYVDQEANAIQVRSASRLGQSDLGVNRERVETIREKLKELKTNT HHHHHHHHHHHHHCCCCCCEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure METTEKNSSNLIQKMLNIIALLLVIILIVVGINIATSGKLTLFAGTRPDNIGVNSGRLAP CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCC CPGSPNCVSSYSQDVEHGIASLSYDSEPQMAIANLKQIIESMPRTNIVKEEENYLYAEFA CCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH TKIMGYVDDVEFYVDQEANAIQVRSASRLGQSDLGVNRERVETIREKLKELKTNT HHHHHHHHHHHHHCCCCCCEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA