BacMap

Definition	Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession	NC_008312
Length	7,750,108

Click here to switch to the map view.

The map label for this gene is ucpA [C]

Identifier: 113475466

GI number: 113475466

Start: 2741028

End: 2741822

Strand: Reverse

Name: ucpA [C]

Synonym: Tery_1795

Alternate gene names: 113475466

Gene position: 2741822-2741028 (Counterclockwise)

Preceding gene: 113475468

Following gene: 113475465

Centisome position: 35.38

GC content: 34.84

Gene sequence:

>795_bases
ATGAAAACTGCATTAATTACAGGGGCTTCTTCTGGAATTGGTGAAACTTTTGCTAAAGAATTAGCAGCGAGAAAAACCAA
TCTAGTATTAGTGGCTCGTTCGGAAGATAAATTACATAAATTAGCAAATCAGGTCGAGAGTAAATATCAAATTCAGACCA
ATGTAATAGTTCAAGATTTAACAGCATCAGCAGCAGCAAAGTCTATATTTGAAGTAGTTTTAGAGCAAGGATTAACTATA
GATTTATTAGTTAATAATGCTGGTTTTGGTGACTATGGAAATTTTACTCAAAGACCTCTAGAAAAGCAGGTAAATATGAT
TCAATTAAATATTACTGCTTTAGTGGAATTAACATATTTATTTTTAGGCCGAATGCAACAACGCCAGTCTGGTGGGATTA
TTAATGTTGCTTCAATTGGAGGATTTCAACCTTTGCCTTATATGTCTGTTTATGGTGCAACTAAGGCATTTGTTTTAAGT
TTTAGTGAGGCTTTGTGGGCAGAAAATCGAGATTCAGGGGTGAAGATATTTGCCCTTTGTCCTGGACCAACAGAGTCAGA
TTTTTTCAAGAAAGCAGAATTTCCGGAGTTTGCTCGAGAAGGTTCAGAGGCAAAATTGACCTCTGCACAAAATGTAGTAC
GAGATGCTCTTGAAGCATTAGAAAAAGATAAGTCTAATGTTGTTACAGGAGAATTTTTAAATCAGGTAATTGTTAATACT
TCTCGTTTTCTTCCCCGAGAGACTTTAGTTAGTTTGGTAGAAAAACAGTTTAAAGGTTTGGATTCCAATAAGTAA

Upstream 100 bases:

>100_bases
AGGGGTTAATAGTCATTAACTCTGCTCTAGATTAGTTATGGGTAATTCCTGATTAATTTATAAAAATATAATGATTATAT
CCTATTTGATCTTAATCTAA

Downstream 100 bases:

>100_bases
GTAAATATACTTCCTATTGCCAAAAAAGTCATTTCCATCTTAAATCTAAGAATAGAATACTAAAATTAGCTTTGACAAAC
AAAAAAGATTATGTTAAACA

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MKTALITGASSGIGETFAKELAARKTNLVLVARSEDKLHKLANQVESKYQIQTNVIVQDLTASAAAKSIFEVVLEQGLTI
DLLVNNAGFGDYGNFTQRPLEKQVNMIQLNITALVELTYLFLGRMQQRQSGGIINVASIGGFQPLPYMSVYGATKAFVLS
FSEALWAENRDSGVKIFALCPGPTESDFFKKAEFPEFAREGSEAKLTSAQNVVRDALEALEKDKSNVVTGEFLNQVIVNT
SRFLPRETLVSLVEKQFKGLDSNK

Sequences:

>Translated_264_residues
MKTALITGASSGIGETFAKELAARKTNLVLVARSEDKLHKLANQVESKYQIQTNVIVQDLTASAAAKSIFEVVLEQGLTI
DLLVNNAGFGDYGNFTQRPLEKQVNMIQLNITALVELTYLFLGRMQQRQSGGIINVASIGGFQPLPYMSVYGATKAFVLS
FSEALWAENRDSGVKIFALCPGPTESDFFKKAEFPEFAREGSEAKLTSAQNVVRDALEALEKDKSNVVTGEFLNQVIVNT
SRFLPRETLVSLVEKQFKGLDSNK
>Mature_264_residues
MKTALITGASSGIGETFAKELAARKTNLVLVARSEDKLHKLANQVESKYQIQTNVIVQDLTASAAAKSIFEVVLEQGLTI
DLLVNNAGFGDYGNFTQRPLEKQVNMIQLNITALVELTYLFLGRMQQRQSGGIINVASIGGFQPLPYMSVYGATKAFVLS
FSEALWAENRDSGVKIFALCPGPTESDFFKKAEFPEFAREGSEAKLTSAQNVVRDALEALEKDKSNVVTGEFLNQVIVNT
SRFLPRETLVSLVEKQFKGLDSNK

Specific function: Unknown

COG id: COG0300

COG function: function code R; Short-chain dehydrogenases of various substrate specificities

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7705855, Length=186, Percent_Identity=34.9462365591398, Blast_Score=112, Evalue=3e-25,
Organism=Homo sapiens, GI4557649, Length=183, Percent_Identity=38.7978142076503, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI226371731, Length=184, Percent_Identity=32.0652173913043, Blast_Score=104, Evalue=7e-23,
Organism=Homo sapiens, GI20149619, Length=250, Percent_Identity=28, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI31542939, Length=224, Percent_Identity=28.125, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI7706318, Length=248, Percent_Identity=27.4193548387097, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI109715829, Length=197, Percent_Identity=30.9644670050761, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI224922801, Length=168, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI210032110, Length=245, Percent_Identity=25.3061224489796, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI22507405, Length=186, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI32483357, Length=193, Percent_Identity=24.8704663212435, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI7657478, Length=204, Percent_Identity=28.921568627451, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI87082100, Length=267, Percent_Identity=28.8389513108614, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1787335, Length=239, Percent_Identity=27.6150627615063, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1787820, Length=267, Percent_Identity=26.2172284644195, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI87082160, Length=192, Percent_Identity=29.1666666666667, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1786701, Length=187, Percent_Identity=27.807486631016, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71994604, Length=243, Percent_Identity=30.8641975308642, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71994600, Length=244, Percent_Identity=28.6885245901639, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71997402, Length=251, Percent_Identity=25.8964143426295, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560176, Length=261, Percent_Identity=27.5862068965517, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI212646214, Length=202, Percent_Identity=30.1980198019802, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI25152911, Length=184, Percent_Identity=30.4347826086957, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=211, Percent_Identity=29.8578199052133, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17560150, Length=210, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17559552, Length=251, Percent_Identity=27.0916334661355, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17562990, Length=215, Percent_Identity=28.3720930232558, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17557668, Length=185, Percent_Identity=29.1891891891892, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562910, Length=195, Percent_Identity=29.2307692307692, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17570069, Length=194, Percent_Identity=26.8041237113402, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17560676, Length=192, Percent_Identity=22.3958333333333, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI193203115, Length=254, Percent_Identity=25.5905511811024, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI193203117, Length=254, Percent_Identity=25.5905511811024, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17563726, Length=209, Percent_Identity=26.7942583732057, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17560332, Length=197, Percent_Identity=25.3807106598985, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=250, Percent_Identity=31.2, Blast_Score=93, Evalue=5e-20,
Organism=Saccharomyces cerevisiae, GI6319635, Length=180, Percent_Identity=30, Blast_Score=77, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24640442, Length=226, Percent_Identity=35.3982300884956, Blast_Score=116, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24584752, Length=182, Percent_Identity=34.0659340659341, Blast_Score=107, Evalue=7e-24,
Organism=Drosophila melanogaster, GI24584744, Length=183, Percent_Identity=33.879781420765, Blast_Score=105, Evalue=3e-23,
Organism=Drosophila melanogaster, GI28574402, Length=183, Percent_Identity=33.879781420765, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI161076933, Length=180, Percent_Identity=32.2222222222222, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24584748, Length=180, Percent_Identity=32.2222222222222, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI28571526, Length=237, Percent_Identity=30.379746835443, Blast_Score=94, Evalue=7e-20,
Organism=Drosophila melanogaster, GI221331216, Length=240, Percent_Identity=29.1666666666667, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24665247, Length=240, Percent_Identity=29.1666666666667, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24644339, Length=190, Percent_Identity=31.0526315789474, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24580925, Length=195, Percent_Identity=33.3333333333333, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI221331218, Length=240, Percent_Identity=28.75, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24665243, Length=240, Percent_Identity=28.75, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI21357041, Length=181, Percent_Identity=30.3867403314917, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI116007236, Length=195, Percent_Identity=28.7179487179487, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI116007238, Length=181, Percent_Identity=29.2817679558011, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI23397609, Length=181, Percent_Identity=30.3867403314917, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI28571387, Length=190, Percent_Identity=27.3684210526316, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24641232, Length=229, Percent_Identity=24.0174672489083, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24649181, Length=168, Percent_Identity=27.3809523809524, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI116007234, Length=201, Percent_Identity=30.3482587064677, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21358495, Length=186, Percent_Identity=27.9569892473118, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21355631, Length=171, Percent_Identity=28.0701754385965, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24648944, Length=218, Percent_Identity=28.4403669724771, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007232, Length=186, Percent_Identity=31.7204301075269, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28950; Mature: 28950

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTALITGASSGIGETFAKELAARKTNLVLVARSEDKLHKLANQVESKYQIQTNVIVQDL
CCCEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
TASAAAKSIFEVVLEQGLTIDLLVNNAGFGDYGNFTQRPLEKQVNMIQLNITALVELTYL
HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHCHHHHCCCEEEEHHHHHHHHHHH
FLGRMQQRQSGGIINVASIGGFQPLPYMSVYGATKAFVLSFSEALWAENRDSGVKIFALC
HHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC
PGPTESDFFKKAEFPEFAREGSEAKLTSAQNVVRDALEALEKDKSNVVTGEFLNQVIVNT
CCCCCHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
SRFLPRETLVSLVEKQFKGLDSNK
HHCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKTALITGASSGIGETFAKELAARKTNLVLVARSEDKLHKLANQVESKYQIQTNVIVQDL
CCCEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
TASAAAKSIFEVVLEQGLTIDLLVNNAGFGDYGNFTQRPLEKQVNMIQLNITALVELTYL
HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHCHHHHCCCEEEEHHHHHHHHHHH
FLGRMQQRQSGGIINVASIGGFQPLPYMSVYGATKAFVLSFSEALWAENRDSGVKIFALC
HHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC
PGPTESDFFKKAEFPEFAREGSEAKLTSAQNVVRDALEALEKDKSNVVTGEFLNQVIVNT
CCCCCHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
SRFLPRETLVSLVEKQFKGLDSNK
HHCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12950922 [H]