| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475464
Identifier: 113475464
GI number: 113475464
Start: 2738086
End: 2739255
Strand: Reverse
Name: 113475464
Synonym: Tery_1793
Alternate gene names: NA
Gene position: 2739255-2738086 (Counterclockwise)
Preceding gene: 113475465
Following gene: 113475462
Centisome position: 35.34
GC content: 40.43
Gene sequence:
>1170_bases ATGAGTCATATAGTAATTATTGGATGTGGAGTAGTTGGAGCAACGATCGCTTATCAACTCAGCAAAATAGAAGGTTTAAA AATTACAGTCTTAGATAAACAAATGCCTGCTCAAGGATCTACGGGTGCTGCTTTGGGTGTTTTGATGGGAGTTATTAGTC AAAAAGCTAAAGGCAGACCTTGGAAAATGAGACGCATGAGTGTGCAAGCTTATCACAATTTAATTCCTGAGCTAGAAGCC AAAATAAATCGCTCTATTTCTCACAACCGTCAAGGTATTTTACAGTTGTGTTTGCCTGGGGAAGATCTCGACAAGTGGCA AAGATTAATAAATATTCGAGAAGCAGATGATTTGCCATTAGAAATGTGGGATGTAGAACGACTAGGCGATCGCTGCCCCC AGCTCCAAATATCAGAGGTGATAGCAGCTATTTATTCTCCCGAAGATTTACAAGTTAACCCTGTTGAATTAACTTTAGCT TTAGTAGAAGCGGCTCAACAAAATGGTGTGAATTTTCATTTTGGGGTCACAGTTGCTGAATATAAGACTATTTCTCTGCC AAGAAATGAATATCGTTGTCGCCAAGTATCTATAAAAAATTTGGATGAGACAAAAAAAACTCCTACTTTGCCAGATGTAG ACTGGTTAGTTGTTGCCGCCGGCTTGGGTTCATTACCATGTTTACAAGGAATAAAAGGGGGTAAGCTACGCTCTTTGCAA CTCAAGCGCAAGTCTAATGTTGATAATAGATTTACTCTAATACCTGTATTAGGTCAAGCTTTACATCTGCAAGTGTCAAC GCTTTTAGGAAAGTCAGATTTTCAACCAGTGATCACTGGGGATGATGTGCATATTATACCAGTAGCAGAAAATGAATATT GGGTGGGAGCAACAGTTGAATTTCCCAACGATATCGGTGAGGTGGTAGCTGACTCCAGTTTATTAGATCACGTGATGGCG AGAGCAATTAGTTTTTGTCCGGGTTTAGCAGATGCAAATATTCTTAGGAAATGGTCTGGTTTACGACCTCGTCCAGAAGG TCAAGCTGCTCCTGCAGTTGGTTATCTGGAAGGTTGGCGAAATATATTGTTGGCAACAGGTCATTATCGGAATGGGGTGT TGTTAGCTCCAGCAACAGCAGAGGCAGTTGAAAAAATGATTGTCAAGTAA
Upstream 100 bases:
>100_bases TGAAATTTCTGAAGTTTGACAAAAAGTTAGCATTAATGCATGAATTGGTATTACTTGAGCTTAAAGCCATAGTAAATTGA TATTTTTTAAATTATTCAAA
Downstream 100 bases:
>100_bases TATCATGTCAGCTTTAATACTTACACTTGACTTTGTTGGATGAAAGTGGCAATATAATTACTGTACTTGCTCTGCTAAGG TGACAGCCCTTCTTAGTTAT
Product: FAD dependent oxidoreductase
Products: NA
Alternate protein names: Glycine Oxidase ThiO; Glycine Oxidase; D-Amino Acid Oxidase; FAD-Dependent Glycine Oxidase; Glycine/D-Amino Acid Oxidase; Glycine/D-Amino Acid Oxidases; Glycine Oxidase Thio; Glycine Cleavage T-Protein; FAD-Dependent Oxidoreductase; Dimethylglycine Dehydrogenase; Glycerol-3-Phosphate Dehydrogenase; FAD Dependent Oxidoreductase/Aminomethyl Transferase
Number of amino acids: Translated: 389; Mature: 388
Protein sequence:
>389_residues MSHIVIIGCGVVGATIAYQLSKIEGLKITVLDKQMPAQGSTGAALGVLMGVISQKAKGRPWKMRRMSVQAYHNLIPELEA KINRSISHNRQGILQLCLPGEDLDKWQRLINIREADDLPLEMWDVERLGDRCPQLQISEVIAAIYSPEDLQVNPVELTLA LVEAAQQNGVNFHFGVTVAEYKTISLPRNEYRCRQVSIKNLDETKKTPTLPDVDWLVVAAGLGSLPCLQGIKGGKLRSLQ LKRKSNVDNRFTLIPVLGQALHLQVSTLLGKSDFQPVITGDDVHIIPVAENEYWVGATVEFPNDIGEVVADSSLLDHVMA RAISFCPGLADANILRKWSGLRPRPEGQAAPAVGYLEGWRNILLATGHYRNGVLLAPATAEAVEKMIVK
Sequences:
>Translated_389_residues MSHIVIIGCGVVGATIAYQLSKIEGLKITVLDKQMPAQGSTGAALGVLMGVISQKAKGRPWKMRRMSVQAYHNLIPELEA KINRSISHNRQGILQLCLPGEDLDKWQRLINIREADDLPLEMWDVERLGDRCPQLQISEVIAAIYSPEDLQVNPVELTLA LVEAAQQNGVNFHFGVTVAEYKTISLPRNEYRCRQVSIKNLDETKKTPTLPDVDWLVVAAGLGSLPCLQGIKGGKLRSLQ LKRKSNVDNRFTLIPVLGQALHLQVSTLLGKSDFQPVITGDDVHIIPVAENEYWVGATVEFPNDIGEVVADSSLLDHVMA RAISFCPGLADANILRKWSGLRPRPEGQAAPAVGYLEGWRNILLATGHYRNGVLLAPATAEAVEKMIVK >Mature_388_residues SHIVIIGCGVVGATIAYQLSKIEGLKITVLDKQMPAQGSTGAALGVLMGVISQKAKGRPWKMRRMSVQAYHNLIPELEAK INRSISHNRQGILQLCLPGEDLDKWQRLINIREADDLPLEMWDVERLGDRCPQLQISEVIAAIYSPEDLQVNPVELTLAL VEAAQQNGVNFHFGVTVAEYKTISLPRNEYRCRQVSIKNLDETKKTPTLPDVDWLVVAAGLGSLPCLQGIKGGKLRSLQL KRKSNVDNRFTLIPVLGQALHLQVSTLLGKSDFQPVITGDDVHIIPVAENEYWVGATVEFPNDIGEVVADSSLLDHVMAR AISFCPGLADANILRKWSGLRPRPEGQAAPAVGYLEGWRNILLATGHYRNGVLLAPATAEAVEKMIVK
Specific function: Unknown
COG id: COG0665
COG function: function code E; Glycine/D-amino acid oxidases (deaminating)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42691; Mature: 42560
Theoretical pI: Translated: 7.53; Mature: 7.53
Prosite motif: PS00443 GATASE_TYPE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHIVIIGCGVVGATIAYQLSKIEGLKITVLDKQMPAQGSTGAALGVLMGVISQKAKGRP CCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCC WKMRRMSVQAYHNLIPELEAKINRSISHNRQGILQLCLPGEDLDKWQRLINIREADDLPL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCH EMWDVERLGDRCPQLQISEVIAAIYSPEDLQVNPVELTLALVEAAQQNGVNFHFGVTVAE HHCCHHHHHHHCCCCHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHCCCEEEEEEEEEE YKTISLPRNEYRCRQVSIKNLDETKKTPTLPDVDWLVVAAGLGSLPCLQGIKGGKLRSLQ EEEECCCCCHHHHHHHHHCCCCHHCCCCCCCCCCHHHEECCCCCCHHHCCCCCCCEEEEE LKRKSNVDNRFTLIPVLGQALHLQVSTLLGKSDFQPVITGDDVHIIPVAENEYWVGATVE EHHHCCCCCEEEEHHHHCHHHHHHHHHHHCCCCCCCEEECCCEEEEEEECCCEEEEEEEE FPNDIGEVVADSSLLDHVMARAISFCPGLADANILRKWSGLRPRPEGQAAPAVGYLEGWR CCHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHH NILLATGHYRNGVLLAPATAEAVEKMIVK HEEEEECCCCCCEEECCCHHHHHHHHHCC >Mature Secondary Structure SHIVIIGCGVVGATIAYQLSKIEGLKITVLDKQMPAQGSTGAALGVLMGVISQKAKGRP CEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCC WKMRRMSVQAYHNLIPELEAKINRSISHNRQGILQLCLPGEDLDKWQRLINIREADDLPL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCH EMWDVERLGDRCPQLQISEVIAAIYSPEDLQVNPVELTLALVEAAQQNGVNFHFGVTVAE HHCCHHHHHHHCCCCHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHCCCEEEEEEEEEE YKTISLPRNEYRCRQVSIKNLDETKKTPTLPDVDWLVVAAGLGSLPCLQGIKGGKLRSLQ EEEECCCCCHHHHHHHHHCCCCHHCCCCCCCCCCHHHEECCCCCCHHHCCCCCCCEEEEE LKRKSNVDNRFTLIPVLGQALHLQVSTLLGKSDFQPVITGDDVHIIPVAENEYWVGATVE EHHHCCCCCEEEEHHHHCHHHHHHHHHHHCCCCCCCEEECCCEEEEEEECCCEEEEEEEE FPNDIGEVVADSSLLDHVMARAISFCPGLADANILRKWSGLRPRPEGQAAPAVGYLEGWR CCHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHH NILLATGHYRNGVLLAPATAEAVEKMIVK HEEEEECCCCCCEEECCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA