Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113474671

Identifier: 113474671

GI number: 113474671

Start: 1343991

End: 1344563

Strand: Reverse

Name: 113474671

Synonym: Tery_0849

Alternate gene names: NA

Gene position: 1344563-1343991 (Counterclockwise)

Preceding gene: 113474672

Following gene: 113474670

Centisome position: 17.35

GC content: 39.27

Gene sequence:

>573_bases
TTGTTCTTCAACGACAAAATCAACTCAGGTGTTAACAGCAGCAAACTTACCGAAGACCAATTTAAAATATTTGTCCAACA
ACTAGGACCTTATTCCAGTTCTACCCAAGACCCAGGAAAAATATATTCTATCATCCCTGGTTTTATTAGTTCTGAGGATG
AGGGGTTAATCAGACCGGACAGTATTGTTAATCCAGTCTTTGGAGCATGGGCAGCAGGATTTCAAAATTATTTGCCAGCA
CCAGGAGTCTATGAAAGATTCCAAACTCCCGAACTAACATTAGGACCTACCGCTAGAACAGATAATTTTATTGATATTGC
TTTACTAGGGGATCTAACTCAAGAACAAATAGTCCCAGGAGTAACTCCAGGCGAGATTACTCTAACCTTTGACTCTGGTA
TTAGTAATGGTACAGGAGCAGAATTTGCAGTACTTGAAAATGGTTTTAATAACCTTGGCGGTATTTTTGCCGAACTAGAA
TTCGTTGAAGTTTCCAGTGATGGAGTAAATTTTGCTCCTGTACCTAGGGACTTTTTCACAGGGCAAGCATTCCCACACAA
GTTTATAATTTAG

Upstream 100 bases:

>100_bases
GTTAAATAGAACAATAATCTCTCTGAAGACCTGAGTAGCAATAATGTTTATGGTGATGTAGGTACAGAAACCTTAACTGG
GAGAGAGGGTTTCCATAATT

Downstream 100 bases:

>100_bases
CTGGCAAACAGGTTAATAATGCTTTTGAGTTTGAAGGAGAATTTTTTGGCAGTTCTTGGGGAACTCCTTTTGACTTAGAT
GACTTAGTTAACGACCCGTT

Product: cell surface protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MFFNDKINSGVNSSKLTEDQFKIFVQQLGPYSSSTQDPGKIYSIIPGFISSEDEGLIRPDSIVNPVFGAWAAGFQNYLPA
PGVYERFQTPELTLGPTARTDNFIDIALLGDLTQEQIVPGVTPGEITLTFDSGISNGTGAEFAVLENGFNNLGGIFAELE
FVEVSSDGVNFAPVPRDFFTGQAFPHKFII

Sequences:

>Translated_190_residues
MFFNDKINSGVNSSKLTEDQFKIFVQQLGPYSSSTQDPGKIYSIIPGFISSEDEGLIRPDSIVNPVFGAWAAGFQNYLPA
PGVYERFQTPELTLGPTARTDNFIDIALLGDLTQEQIVPGVTPGEITLTFDSGISNGTGAEFAVLENGFNNLGGIFAELE
FVEVSSDGVNFAPVPRDFFTGQAFPHKFII
>Mature_190_residues
MFFNDKINSGVNSSKLTEDQFKIFVQQLGPYSSSTQDPGKIYSIIPGFISSEDEGLIRPDSIVNPVFGAWAAGFQNYLPA
PGVYERFQTPELTLGPTARTDNFIDIALLGDLTQEQIVPGVTPGEITLTFDSGISNGTGAEFAVLENGFNNLGGIFAELE
FVEVSSDGVNFAPVPRDFFTGQAFPHKFII

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20597; Mature: 20597

Theoretical pI: Translated: 3.91; Mature: 3.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFNDKINSGVNSSKLTEDQFKIFVQQLGPYSSSTQDPGKIYSIIPGFISSEDEGLIRPD
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCH
SIVNPVFGAWAAGFQNYLPAPGVYERFQTPELTLGPTARTDNFIDIALLGDLTQEQIVPG
HHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEECCCCCCCCEEEEEEECCCCHHHHCCC
VTPGEITLTFDSGISNGTGAEFAVLENGFNNLGGIFAELEFVEVSSDGVNFAPVPRDFFT
CCCCEEEEEECCCCCCCCCCEEEEECCCCCHHCHHEEEEEEEEECCCCCCCCCCCHHHHC
GQAFPHKFII
CCCCCCCCCC
>Mature Secondary Structure
MFFNDKINSGVNSSKLTEDQFKIFVQQLGPYSSSTQDPGKIYSIIPGFISSEDEGLIRPD
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCH
SIVNPVFGAWAAGFQNYLPAPGVYERFQTPELTLGPTARTDNFIDIALLGDLTQEQIVPG
HHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEECCCCCCCCEEEEEEECCCCHHHHCCC
VTPGEITLTFDSGISNGTGAEFAVLENGFNNLGGIFAELEFVEVSSDGVNFAPVPRDFFT
CCCCEEEEEECCCCCCCCCCEEEEECCCCCHHCHHEEEEEEEEECCCCCCCCCCCHHHHC
GQAFPHKFII
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA