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The map label for this gene is ydcM [C]

Identifier: 113474519

GI number: 113474519

Start: 1098292

End: 1098864

Strand: Reverse

Name: ydcM [C]

Synonym: Tery_0668

Alternate gene names: 113474519

Gene position: 1098864-1098292 (Counterclockwise)

Preceding gene: 113474520

Following gene: 113474517

Centisome position: 14.18

GC content: 26.7

Gene sequence:

>573_bases
TTGAAAGCTAAATATAAATATCCTATAGAACCTAATATTGTGCAAATAGCTAAATTAAATAAATTATTTGGCTGTTGTAG
ATATGTTTGGAATCAGTCTTTAGTTCATTGTAATCAGTTATATGTTTATACTGTTAAGAAACCTTCATATACTGATTTAA
GTAAGCAGTTTATAACTCAAGCTAAAAAAGAATTAACTTGGTTAAAAGATGTAGCAGATACTCCATTAAAACAATGTCTT
AAAGATTTAGATCAAGCTTACCAAAGTTTCTTTAATAGTTGTACTAGTAAAGAAAAAGGTGTTAAGGTTAAACCTCCTAC
GTTCAAAACTAAAAAATCAGAACAAACTGCTAGATTTTTAAAATATAACTATAAGATAGCTGAAGATCAAATATATCTAA
CAAAGATAGGAAATTTTAAGGTTGTTGGGTTAAGAGAATTGCCTAGTATACCTACTTCTGTCACTATTATCAAAGATAAT
GCAGGTTGTTACTTTGCTATTTTTGTAGTAGAAATTCCTGTTAAAAATTTACTATTGTCTAATAATTTAATTGATGTTGA
TTTTGGGGTTTAA

Upstream 100 bases:

>100_bases
AATATTGGCATAAAGACCTACGCTTTTGTGCAAGGAAGGGTCAAGATAAATAGCAACTAAGACTATAATAATATTGCTTT
AGTTTTAGTGGTGAAAAATA

Downstream 100 bases:

>100_bases
ATTTTGGCTAAGGTTACTAATTTTGAAAATATTTAAGCTCTGAAATTAGTTGGTAAAAAAATTTAATTTTTTGCTTGGTT
TGAAGGTTAATTAGCTCAAA

Product: putative transposase, IS891/IS1136/IS1341

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MKAKYKYPIEPNIVQIAKLNKLFGCCRYVWNQSLVHCNQLYVYTVKKPSYTDLSKQFITQAKKELTWLKDVADTPLKQCL
KDLDQAYQSFFNSCTSKEKGVKVKPPTFKTKKSEQTARFLKYNYKIAEDQIYLTKIGNFKVVGLRELPSIPTSVTIIKDN
AGCYFAIFVVEIPVKNLLLSNNLIDVDFGV

Sequences:

>Translated_190_residues
MKAKYKYPIEPNIVQIAKLNKLFGCCRYVWNQSLVHCNQLYVYTVKKPSYTDLSKQFITQAKKELTWLKDVADTPLKQCL
KDLDQAYQSFFNSCTSKEKGVKVKPPTFKTKKSEQTARFLKYNYKIAEDQIYLTKIGNFKVVGLRELPSIPTSVTIIKDN
AGCYFAIFVVEIPVKNLLLSNNLIDVDFGV
>Mature_190_residues
MKAKYKYPIEPNIVQIAKLNKLFGCCRYVWNQSLVHCNQLYVYTVKKPSYTDLSKQFITQAKKELTWLKDVADTPLKQCL
KDLDQAYQSFFNSCTSKEKGVKVKPPTFKTKKSEQTARFLKYNYKIAEDQIYLTKIGNFKVVGLRELPSIPTSVTIIKDN
AGCYFAIFVVEIPVKNLLLSNNLIDVDFGV

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 21856; Mature: 21856

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKYKYPIEPNIVQIAKLNKLFGCCRYVWNQSLVHCNQLYVYTVKKPSYTDLSKQFITQ
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECEEEEEEECCCCCCHHHHHHHHH
AKKELTWLKDVADTPLKQCLKDLDQAYQSFFNSCTSKEKGVKVKPPTFKTKKSEQTARFL
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCHHHHHHHH
KYNYKIAEDQIYLTKIGNFKVVGLRELPSIPTSVTIIKDNAGCYFAIFVVEIPVKNLLLS
HHCEEECCCEEEEEECCCEEEEEHHHCCCCCCEEEEEECCCCEEEEEEEEECCHHHHHHC
NNLIDVDFGV
CCEEEEECCC
>Mature Secondary Structure
MKAKYKYPIEPNIVQIAKLNKLFGCCRYVWNQSLVHCNQLYVYTVKKPSYTDLSKQFITQ
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECEEEEEEECCCCCCHHHHHHHHH
AKKELTWLKDVADTPLKQCLKDLDQAYQSFFNSCTSKEKGVKVKPPTFKTKKSEQTARFL
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCHHHHHHHH
KYNYKIAEDQIYLTKIGNFKVVGLRELPSIPTSVTIIKDNAGCYFAIFVVEIPVKNLLLS
HHCEEECCCEEEEEECCCEEEEEHHHCCCCCCEEEEEECCCCEEEEEEEEECCHHHHHHC
NNLIDVDFGV
CCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]