Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113474427

Identifier: 113474427

GI number: 113474427

Start: 889556

End: 890587

Strand: Direct

Name: 113474427

Synonym: Tery_0568

Alternate gene names: NA

Gene position: 889556-890587 (Clockwise)

Preceding gene: 113474426

Following gene: 113474428

Centisome position: 11.48

GC content: 38.08

Gene sequence:

>1032_bases
ATGGTAAATTTTTCCCTGAGTTTGAAAAGAAAAATCCAAACTGCATTGACCTTAACAGTAATGGGATGGGCTATGCCTGC
CTTCAGTGCTCCCACTCATATCTTAATTAATGTTGAGGGCAATGTCCAAGTCAAAAAGTCAAAATGGAAAGACTTTAATA
AAATTGAGGCTGGTATCACTCTCAACAGTCAGGACAAAATTAAAGTAATAGATAATGCTTCGGCTACAATTTATTGTAGT
GATAAAACTAAATGGATAATAGATAAACCAGGAATACATTCGATTTCTGACGGATGTTCAGAAGGAAGCAAAATTTCTTT
ATTAGATCAAGGTAATAATCATTCCACCCGCGGCCCTAAAGCTCCTGCATTTGAAGAAAGTCTAGAAAAACTGCCTTATT
TGGTTAGTCCTCGTAAGACTTATGTTTTGAATGCTCCATTGACTATTCGTTGGAATGAAGTTCCCGGGGCTACTAACTAT
AAAGTTAAGGTGGAAGACTGGGAAAGAGAAACGAAGGAATGCCAAATTAGTTATGATGGGGAATTGGAGCCTGGTGGATA
TTATCGTATAACTATAGTAGCGAATAATGGGGCTACTTCTCAAGATGAATATGGCAGCGAGGAGAAAAATAATAATTGGT
TTATGGTATTAGAGGATGAGGAAGCAGAGGCTTTACAGGAGGAATTACGGCAGAAGCTAGAGGCGCTCAAGGAGGCTGAT
AAAACTCAAGAGGAAAAAGATTGGAGTTTAGCCATGTTTTACCTAGACAAAGAATTAAATTTTGACGTTATTCAGATATT
GGAAGGCTTAGTTAAATCTGGAAGTCAAAAATTAGAGGTTTATTATTTGTTGGGAGACATATACCAAAAGCTAGGGTTGA
ATTTAATGGCAAAAGACATTTTTCAGCAAGGGCTGGCTCTGAGTGTGCAGCAGGGGAATAGTGAATATAAGGGGAGCATC
CAACAGAGATTAGAGTGGCTGGAACCTTCTTTGGGTATTATTAACAAAGCAGGAGAGTTATTGAGGAGGTAA

Upstream 100 bases:

>100_bases
AAAAAAAAAACTTATGAGACTAACATTAATAAATATTAAATATACTATAATCTTATAAGATACAAGTAGTAAATAAAAAT
TACACAACAGAAAAGCAACA

Downstream 100 bases:

>100_bases
ATAGAAGTTATTTAGTCCCCCATAAACTGATTACTCAATTAATAGGAGGAAACTAAATGATAGTAGTTAATGAGCTAGCA
GTCAAAAATATGGCCTGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MVNFSLSLKRKIQTALTLTVMGWAMPAFSAPTHILINVEGNVQVKKSKWKDFNKIEAGITLNSQDKIKVIDNASATIYCS
DKTKWIIDKPGIHSISDGCSEGSKISLLDQGNNHSTRGPKAPAFEESLEKLPYLVSPRKTYVLNAPLTIRWNEVPGATNY
KVKVEDWERETKECQISYDGELEPGGYYRITIVANNGATSQDEYGSEEKNNNWFMVLEDEEAEALQEELRQKLEALKEAD
KTQEEKDWSLAMFYLDKELNFDVIQILEGLVKSGSQKLEVYYLLGDIYQKLGLNLMAKDIFQQGLALSVQQGNSEYKGSI
QQRLEWLEPSLGIINKAGELLRR

Sequences:

>Translated_343_residues
MVNFSLSLKRKIQTALTLTVMGWAMPAFSAPTHILINVEGNVQVKKSKWKDFNKIEAGITLNSQDKIKVIDNASATIYCS
DKTKWIIDKPGIHSISDGCSEGSKISLLDQGNNHSTRGPKAPAFEESLEKLPYLVSPRKTYVLNAPLTIRWNEVPGATNY
KVKVEDWERETKECQISYDGELEPGGYYRITIVANNGATSQDEYGSEEKNNNWFMVLEDEEAEALQEELRQKLEALKEAD
KTQEEKDWSLAMFYLDKELNFDVIQILEGLVKSGSQKLEVYYLLGDIYQKLGLNLMAKDIFQQGLALSVQQGNSEYKGSI
QQRLEWLEPSLGIINKAGELLRR
>Mature_343_residues
MVNFSLSLKRKIQTALTLTVMGWAMPAFSAPTHILINVEGNVQVKKSKWKDFNKIEAGITLNSQDKIKVIDNASATIYCS
DKTKWIIDKPGIHSISDGCSEGSKISLLDQGNNHSTRGPKAPAFEESLEKLPYLVSPRKTYVLNAPLTIRWNEVPGATNY
KVKVEDWERETKECQISYDGELEPGGYYRITIVANNGATSQDEYGSEEKNNNWFMVLEDEEAEALQEELRQKLEALKEAD
KTQEEKDWSLAMFYLDKELNFDVIQILEGLVKSGSQKLEVYYLLGDIYQKLGLNLMAKDIFQQGLALSVQQGNSEYKGSI
QQRLEWLEPSLGIINKAGELLRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38810; Mature: 38810

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNFSLSLKRKIQTALTLTVMGWAMPAFSAPTHILINVEGNVQVKKSKWKDFNKIEAGIT
CCCCCHHHHHHHHHHHEEEHHHHHCCCCCCCCEEEEEECCCEEEECCCCCCCHHEEECEE
LNSQDKIKVIDNASATIYCSDKTKWIIDKPGIHSISDGCSEGSKISLLDQGNNHSTRGPK
ECCCCCEEEEECCCEEEEECCCCEEEEECCCCCCHHHCCCCCCEEEEEECCCCCCCCCCC
APAFEESLEKLPYLVSPRKTYVLNAPLTIRWNEVPGATNYKVKVEDWERETKECQISYDG
CCHHHHHHHHCCEEECCCEEEEEECCEEEEECCCCCCCCEEEEECCCCCCCCEEEEEECC
ELEPGGYYRITIVANNGATSQDEYGSEEKNNNWFMVLEDEEAEALQEELRQKLEALKEAD
CCCCCCEEEEEEEECCCCCCCHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHH
KTQEEKDWSLAMFYLDKELNFDVIQILEGLVKSGSQKLEVYYLLGDIYQKLGLNLMAKDI
CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHCCHHHHHHH
FQQGLALSVQQGNSEYKGSIQQRLEWLEPSLGIINKAGELLRR
HHCCCEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MVNFSLSLKRKIQTALTLTVMGWAMPAFSAPTHILINVEGNVQVKKSKWKDFNKIEAGIT
CCCCCHHHHHHHHHHHEEEHHHHHCCCCCCCCEEEEEECCCEEEECCCCCCCHHEEECEE
LNSQDKIKVIDNASATIYCSDKTKWIIDKPGIHSISDGCSEGSKISLLDQGNNHSTRGPK
ECCCCCEEEEECCCEEEEECCCCEEEEECCCCCCHHHCCCCCCEEEEEECCCCCCCCCCC
APAFEESLEKLPYLVSPRKTYVLNAPLTIRWNEVPGATNYKVKVEDWERETKECQISYDG
CCHHHHHHHHCCEEECCCEEEEEECCEEEEECCCCCCCCEEEEECCCCCCCCEEEEEECC
ELEPGGYYRITIVANNGATSQDEYGSEEKNNNWFMVLEDEEAEALQEELRQKLEALKEAD
CCCCCCEEEEEEEECCCCCCCHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHH
KTQEEKDWSLAMFYLDKELNFDVIQILEGLVKSGSQKLEVYYLLGDIYQKLGLNLMAKDI
CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHCCHHHHHHH
FQQGLALSVQQGNSEYKGSIQQRLEWLEPSLGIINKAGELLRR
HHCCCEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA