Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113474413

Identifier: 113474413

GI number: 113474413

Start: 868419

End: 868709

Strand: Reverse

Name: 113474413

Synonym: Tery_0552

Alternate gene names: NA

Gene position: 868709-868419 (Counterclockwise)

Preceding gene: 113474415

Following gene: 113474408

Centisome position: 11.21

GC content: 46.05

Gene sequence:

>291_bases
ATGTCAAGTCCCGAAGTACGCGTATGGCAGTATTATGTCAGCGCGATCATGGAGAAGGAAGGAAACAATCGAATAATTAT
CGCAAGGGATACAGAACAGAGGGACCCAAGACCTCCATATTCTGTTGTCAAATTAAAAGATGGTTTACCTCTCGAAGTAT
TAAAACAGTTCGGCTTCGAAGTAAGCGCCTACAACATAACATGGCGACTGCTGACAATAAACCTCAATGATGGATCCGCA
CGGATGAAAGCAAGTCGTAGGCGCCAGCGAACTAGCGGGCGGATCGTATAG

Upstream 100 bases:

>100_bases
TGGGCAAACGTTCTCGGGGTGCTATAGGTGTAGATGATATAGAGTAGATGGGATACGTACGCTTAAAGAGACCGAGGGTC
TTGATGATCCTGATGTTATT

Downstream 100 bases:

>100_bases
GGCTTAGAACGGGAAATAAAAAAAATATAAATAGAGCTAGAATATAAGGGATGCTAAGGAATCCCGCGCTGCCTCGTCAG
AGCAGCCTCGGGAGGATGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 96; Mature: 95

Protein sequence:

>96_residues
MSSPEVRVWQYYVSAIMEKEGNNRIIIARDTEQRDPRPPYSVVKLKDGLPLEVLKQFGFEVSAYNITWRLLTINLNDGSA
RMKASRRRQRTSGRIV

Sequences:

>Translated_96_residues
MSSPEVRVWQYYVSAIMEKEGNNRIIIARDTEQRDPRPPYSVVKLKDGLPLEVLKQFGFEVSAYNITWRLLTINLNDGSA
RMKASRRRQRTSGRIV
>Mature_95_residues
SSPEVRVWQYYVSAIMEKEGNNRIIIARDTEQRDPRPPYSVVKLKDGLPLEVLKQFGFEVSAYNITWRLLTINLNDGSAR
MKASRRRQRTSGRIV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11169; Mature: 11038

Theoretical pI: Translated: 10.79; Mature: 10.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPEVRVWQYYVSAIMEKEGNNRIIIARDTEQRDPRPPYSVVKLKDGLPLEVLKQFGFE
CCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHCCCE
VSAYNITWRLLTINLNDGSARMKASRRRQRTSGRIV
EEEEEEEEEEEEEEECCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SSPEVRVWQYYVSAIMEKEGNNRIIIARDTEQRDPRPPYSVVKLKDGLPLEVLKQFGFE
CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHCCCE
VSAYNITWRLLTINLNDGSARMKASRRRQRTSGRIV
EEEEEEEEEEEEEEECCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA