| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474413
Identifier: 113474413
GI number: 113474413
Start: 868419
End: 868709
Strand: Reverse
Name: 113474413
Synonym: Tery_0552
Alternate gene names: NA
Gene position: 868709-868419 (Counterclockwise)
Preceding gene: 113474415
Following gene: 113474408
Centisome position: 11.21
GC content: 46.05
Gene sequence:
>291_bases ATGTCAAGTCCCGAAGTACGCGTATGGCAGTATTATGTCAGCGCGATCATGGAGAAGGAAGGAAACAATCGAATAATTAT CGCAAGGGATACAGAACAGAGGGACCCAAGACCTCCATATTCTGTTGTCAAATTAAAAGATGGTTTACCTCTCGAAGTAT TAAAACAGTTCGGCTTCGAAGTAAGCGCCTACAACATAACATGGCGACTGCTGACAATAAACCTCAATGATGGATCCGCA CGGATGAAAGCAAGTCGTAGGCGCCAGCGAACTAGCGGGCGGATCGTATAG
Upstream 100 bases:
>100_bases TGGGCAAACGTTCTCGGGGTGCTATAGGTGTAGATGATATAGAGTAGATGGGATACGTACGCTTAAAGAGACCGAGGGTC TTGATGATCCTGATGTTATT
Downstream 100 bases:
>100_bases GGCTTAGAACGGGAAATAAAAAAAATATAAATAGAGCTAGAATATAAGGGATGCTAAGGAATCCCGCGCTGCCTCGTCAG AGCAGCCTCGGGAGGATGTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 96; Mature: 95
Protein sequence:
>96_residues MSSPEVRVWQYYVSAIMEKEGNNRIIIARDTEQRDPRPPYSVVKLKDGLPLEVLKQFGFEVSAYNITWRLLTINLNDGSA RMKASRRRQRTSGRIV
Sequences:
>Translated_96_residues MSSPEVRVWQYYVSAIMEKEGNNRIIIARDTEQRDPRPPYSVVKLKDGLPLEVLKQFGFEVSAYNITWRLLTINLNDGSA RMKASRRRQRTSGRIV >Mature_95_residues SSPEVRVWQYYVSAIMEKEGNNRIIIARDTEQRDPRPPYSVVKLKDGLPLEVLKQFGFEVSAYNITWRLLTINLNDGSAR MKASRRRQRTSGRIV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11169; Mature: 11038
Theoretical pI: Translated: 10.79; Mature: 10.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSPEVRVWQYYVSAIMEKEGNNRIIIARDTEQRDPRPPYSVVKLKDGLPLEVLKQFGFE CCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHCCCE VSAYNITWRLLTINLNDGSARMKASRRRQRTSGRIV EEEEEEEEEEEEEEECCCCHHHHHHHHHHCCCCCCC >Mature Secondary Structure SSPEVRVWQYYVSAIMEKEGNNRIIIARDTEQRDPRPPYSVVKLKDGLPLEVLKQFGFE CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHCCCE VSAYNITWRLLTINLNDGSARMKASRRRQRTSGRIV EEEEEEEEEEEEEEECCCCHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA