| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474403
Identifier: 113474403
GI number: 113474403
Start: 854436
End: 854939
Strand: Direct
Name: 113474403
Synonym: Tery_0540
Alternate gene names: NA
Gene position: 854436-854939 (Clockwise)
Preceding gene: 113474400
Following gene: 113474409
Centisome position: 11.02
GC content: 33.93
Gene sequence:
>504_bases ATGTCAGGAGTAGTAAAAATTGAGATAAATGAATCGGTAGAAACTCTCAAAAAACTTTTAAAAAGTGCGAGTACAGCTCA AGAAAAGGAAAGACTTCAAACTATTTACTGGTTGAAAACTCAAACAGTAGAAACAGTAAAAGAAATTGCGATAATGTTAG GACGCAATCGAGTCACAGTACAAAAATGGTTAGGGAAATATCGTACAGGTGGACTGAATCTTTTACTAGAACCAAAGAAA AATCTAGGAGGGAGGCCAAGTTCAATTCCACCAAATGTAATCGAGAAATTAGAAGCAGAATTGCAAAACCCGGAAGGTTT CCAAAGCTATGGTGAAATTCAACAGTGGTTAACGACTTGTTTTGACATCGAGCTGTCTTATCGAACAGTTCATCAATTAG TCAGATATAAATTAAAAAGTAAATTAAAAGTTCCACGTCCAAATCACATAAAACAAAATAAAGAAGCTCAAGAAAACTTT AAAAAAAACTCTCATCTCAACTAG
Upstream 100 bases:
>100_bases CAGTTCATCAATTTGAGCCGTCTCAGGATTTTCTAAGTTATACTAATTTCATAAACTTAAGCTACACTTTTAGAAGTAAC CTATTATAGAAAATGTCCCC
Downstream 100 bases:
>100_bases AAGAGAAAATTAAGTTAATTAATAAATATTCGGAAAATCAACTGCCAATTCGCTATTGGTGTCAAGACGAGACTAGAATT GGATTAAAAACTATAACAGG
Product: putative transposase
Products: NA
Alternate protein names: Transposase OrfA
Number of amino acids: Translated: 167; Mature: 166
Protein sequence:
>167_residues MSGVVKIEINESVETLKKLLKSASTAQEKERLQTIYWLKTQTVETVKEIAIMLGRNRVTVQKWLGKYRTGGLNLLLEPKK NLGGRPSSIPPNVIEKLEAELQNPEGFQSYGEIQQWLTTCFDIELSYRTVHQLVRYKLKSKLKVPRPNHIKQNKEAQENF KKNSHLN
Sequences:
>Translated_167_residues MSGVVKIEINESVETLKKLLKSASTAQEKERLQTIYWLKTQTVETVKEIAIMLGRNRVTVQKWLGKYRTGGLNLLLEPKK NLGGRPSSIPPNVIEKLEAELQNPEGFQSYGEIQQWLTTCFDIELSYRTVHQLVRYKLKSKLKVPRPNHIKQNKEAQENF KKNSHLN >Mature_166_residues SGVVKIEINESVETLKKLLKSASTAQEKERLQTIYWLKTQTVETVKEIAIMLGRNRVTVQKWLGKYRTGGLNLLLEPKKN LGGRPSSIPPNVIEKLEAELQNPEGFQSYGEIQQWLTTCFDIELSYRTVHQLVRYKLKSKLKVPRPNHIKQNKEAQENFK KNSHLN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19287; Mature: 19155
Theoretical pI: Translated: 10.40; Mature: 10.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGVVKIEINESVETLKKLLKSASTAQEKERLQTIYWLKTQTVETVKEIAIMLGRNRVTV CCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH QKWLGKYRTGGLNLLLEPKKNLGGRPSSIPPNVIEKLEAELQNPEGFQSYGEIQQWLTTC HHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH FDIELSYRTVHQLVRYKLKSKLKVPRPNHIKQNKEAQENFKKNSHLN HHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCC >Mature Secondary Structure SGVVKIEINESVETLKKLLKSASTAQEKERLQTIYWLKTQTVETVKEIAIMLGRNRVTV CCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH QKWLGKYRTGGLNLLLEPKKNLGGRPSSIPPNVIEKLEAELQNPEGFQSYGEIQQWLTTC HHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH FDIELSYRTVHQLVRYKLKSKLKVPRPNHIKQNKEAQENFKKNSHLN HHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA