| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474241
Identifier: 113474241
GI number: 113474241
Start: 553419
End: 553976
Strand: Direct
Name: 113474241
Synonym: Tery_0360
Alternate gene names: NA
Gene position: 553419-553976 (Clockwise)
Preceding gene: 113474240
Following gene: 113474244
Centisome position: 7.14
GC content: 38.35
Gene sequence:
>558_bases ATGAAAAAAGTTTTCTCTAATTGGATAAAGTCTTTAATTGCTGGTGTTGCAGTTGCTGGAGTTTTAGGGGCAACATATTG GTATTTTGTCGGTTTACCAGAAAATCCTACCTTGAGTACAAAAACTCAGACTGTTCTTAACTCTAGTTTATCTACCACAG ACTTAGCACCACCAGTCCTTAATGTCACTGTCTACCGTACTCCTACTTGCGGATGTTGTAAGGGTTGGGTGGAACATATC AAGCAAAATGGCTTTCAAATAACTGATATTGTCAAACCTGAGTCAGAAATTAAAACTATTCGCCAGAAATATAATTTACC CTCAGATTTAACATCTTGTCATACCAGTGAAATTGCTGGCTATCTTGTAGAAGGTCATGTTCCCGTGGCAGATGTCAAAA GTTTAATCGCCCAGAAACCAGATGTTGCTGGAATTAGCGTTCCTGGAATGCCCATTGGTACTCCTGGCATGGAAATGGGC GATCGCAAACAATCTTTTGATGTATTTACCTTTGAAAAAGATGGTCAGACTAAAGTTTTTAATTCCTATAAATTCTAG
Upstream 100 bases:
>100_bases TAGGAATGATAGGAAATTTGGAAATTAAAGCAAGACTTTCTATTTAACCAGAAAATTTATCATTACAATAGAGTACTATA GATTATTTAAGGTAATAATT
Downstream 100 bases:
>100_bases AATAGGGAATAGAGAATAGTTAGAAGTAATTGATACTTTTTCGATGGTAATTAATTTTATCTTTGATTTTAGGAGAGTTT TAATAAAATAAATTAGATAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 185; Mature: 185
Protein sequence:
>185_residues MKKVFSNWIKSLIAGVAVAGVLGATYWYFVGLPENPTLSTKTQTVLNSSLSTTDLAPPVLNVTVYRTPTCGCCKGWVEHI KQNGFQITDIVKPESEIKTIRQKYNLPSDLTSCHTSEIAGYLVEGHVPVADVKSLIAQKPDVAGISVPGMPIGTPGMEMG DRKQSFDVFTFEKDGQTKVFNSYKF
Sequences:
>Translated_185_residues MKKVFSNWIKSLIAGVAVAGVLGATYWYFVGLPENPTLSTKTQTVLNSSLSTTDLAPPVLNVTVYRTPTCGCCKGWVEHI KQNGFQITDIVKPESEIKTIRQKYNLPSDLTSCHTSEIAGYLVEGHVPVADVKSLIAQKPDVAGISVPGMPIGTPGMEMG DRKQSFDVFTFEKDGQTKVFNSYKF >Mature_185_residues MKKVFSNWIKSLIAGVAVAGVLGATYWYFVGLPENPTLSTKTQTVLNSSLSTTDLAPPVLNVTVYRTPTCGCCKGWVEHI KQNGFQITDIVKPESEIKTIRQKYNLPSDLTSCHTSEIAGYLVEGHVPVADVKSLIAQKPDVAGISVPGMPIGTPGMEMG DRKQSFDVFTFEKDGQTKVFNSYKF
Specific function: Unknown
COG id: COG3019
COG function: function code R; Predicted metal-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20207; Mature: 20207
Theoretical pI: Translated: 8.31; Mature: 8.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKVFSNWIKSLIAGVAVAGVLGATYWYFVGLPENPTLSTKTQTVLNSSLSTTDLAPPVL CHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCEE NVTVYRTPTCGCCKGWVEHIKQNGFQITDIVKPESEIKTIRQKYNLPSDLTSCHTSEIAG EEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHH YLVEGHVPVADVKSLIAQKPDVAGISVPGMPIGTPGMEMGDRKQSFDVFTFEKDGQTKVF HHEECCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECC NSYKF CCCCC >Mature Secondary Structure MKKVFSNWIKSLIAGVAVAGVLGATYWYFVGLPENPTLSTKTQTVLNSSLSTTDLAPPVL CHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCEE NVTVYRTPTCGCCKGWVEHIKQNGFQITDIVKPESEIKTIRQKYNLPSDLTSCHTSEIAG EEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHH YLVEGHVPVADVKSLIAQKPDVAGISVPGMPIGTPGMEMGDRKQSFDVFTFEKDGQTKVF HHEECCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECC NSYKF CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA