Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113474090

Identifier: 113474090

GI number: 113474090

Start: 279451

End: 280641

Strand: Direct

Name: 113474090

Synonym: Tery_0187

Alternate gene names: NA

Gene position: 279451-280641 (Clockwise)

Preceding gene: 113474089

Following gene: 113474091

Centisome position: 3.61

GC content: 29.3

Gene sequence:

>1191_bases
ATGTATAGCAATTTTGAGATAAACTATAGAGTTTATATCAAACTTTTATGCTATTTATATGAAATTATGAAAAATCCTAA
AAATCAAAGATATAAATATTTAATTTCTACCTTAGTTACTTGTTTGGTTATTCTTCTAATTACAGCCATATTGATTAAAT
CAATGACTCAAGCAAATATTCCTAAAATAACTTTTTTAGGAGAGGTGAATTTTCCCACAGGTTTAAAATTTAAAAATACA
GAAGTAGGTGGACTTTCTGGCATAACCTACAATCAAGATAAACAAATTTATTATGCTATTTCTGATGACCGTAGTAGGAA
AGCAGCAGCGCGATTTTATACTCTTAAAATTGACCTAGATATAAATAAAATTTCGGAGGAAACTGTAACTTTTATAGATG
TTACAACTTTATTAAATGAAAATAGCCAACCATTTCCCTCTTTAAGTATTGATACAGAAGGAATTGCTTTGACTGGAGAG
AGTTTATTTATATCTTCTGAAGGAGATAGAAAACGTCAAATACAACCATTTATTAGAGAATTTTCTTTAGCAGGTAAACA
ACTACAAAATTTACCAATTCCCAAAAAGTTTCTGATACAAGCTAAAAGTGGAATCAGAAATAATCTAGCCTTAGAAAATT
TAACTATTACTCCTAACAAAAAATACCTCTTCACTGCTACAGAAAATGCTTTAATTCAAGATGGTGTAAAAGCAAATGTT
TCCACTGGTAGTCCTTGTAGAATTTTACAGTATGATTTAATTAAAGGTAAGCCAGAAAAAGAGTTTTTATATATCACAGA
ACCTATTACTTCTAAATCTAATAATTCAGGTGTTTTAAAGATTAATGGCTTAGTAGAATTAATGGCGTTAGATGATACTC
ATCTTTTAAGTCTAGAAAGATCTTTTTCTCTAGATACTGGAAATGTGATTAAACTATTTCAAGTTGATCTGTCAAATGCA
GATAATATTCAAAAAATTAATAGCTTAAATACTCATTTAACTCCTATTTCTCCAGCACAAAAAGAATTATTATTAGATTT
GAGTAATCTAGAATTAATCTCAGACAATATTGAAGGAATGACCTTTGGCCCAAGATTGGCAGATGGTCGGCGATCGCTCA
TCCTAGTCAGCGATAATAATTTTAACCCCTTACAATTGACTCAATTTCTCATTTTCAGCACTAAACTCTAG

Upstream 100 bases:

>100_bases
CCTAAATGGTAAAACTCTTACATTTATAATTAATTGAAGAAATTTAAGACAGCTATATTTATGATTTATCCCATTTTTTT
TCAAAATTTATGTTCCTATT

Downstream 100 bases:

>100_bases
CTGTTCAAGTCAAAAACCATTTTGGTTATCAGTTATTAGTTATTAGTATCTAGTTGTGACCAAAACATTTTAAAGTGTCA
TGCATAAATTATGTATTTTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MYSNFEINYRVYIKLLCYLYEIMKNPKNQRYKYLISTLVTCLVILLITAILIKSMTQANIPKITFLGEVNFPTGLKFKNT
EVGGLSGITYNQDKQIYYAISDDRSRKAAARFYTLKIDLDINKISEETVTFIDVTTLLNENSQPFPSLSIDTEGIALTGE
SLFISSEGDRKRQIQPFIREFSLAGKQLQNLPIPKKFLIQAKSGIRNNLALENLTITPNKKYLFTATENALIQDGVKANV
STGSPCRILQYDLIKGKPEKEFLYITEPITSKSNNSGVLKINGLVELMALDDTHLLSLERSFSLDTGNVIKLFQVDLSNA
DNIQKINSLNTHLTPISPAQKELLLDLSNLELISDNIEGMTFGPRLADGRRSLILVSDNNFNPLQLTQFLIFSTKL

Sequences:

>Translated_396_residues
MYSNFEINYRVYIKLLCYLYEIMKNPKNQRYKYLISTLVTCLVILLITAILIKSMTQANIPKITFLGEVNFPTGLKFKNT
EVGGLSGITYNQDKQIYYAISDDRSRKAAARFYTLKIDLDINKISEETVTFIDVTTLLNENSQPFPSLSIDTEGIALTGE
SLFISSEGDRKRQIQPFIREFSLAGKQLQNLPIPKKFLIQAKSGIRNNLALENLTITPNKKYLFTATENALIQDGVKANV
STGSPCRILQYDLIKGKPEKEFLYITEPITSKSNNSGVLKINGLVELMALDDTHLLSLERSFSLDTGNVIKLFQVDLSNA
DNIQKINSLNTHLTPISPAQKELLLDLSNLELISDNIEGMTFGPRLADGRRSLILVSDNNFNPLQLTQFLIFSTKL
>Mature_396_residues
MYSNFEINYRVYIKLLCYLYEIMKNPKNQRYKYLISTLVTCLVILLITAILIKSMTQANIPKITFLGEVNFPTGLKFKNT
EVGGLSGITYNQDKQIYYAISDDRSRKAAARFYTLKIDLDINKISEETVTFIDVTTLLNENSQPFPSLSIDTEGIALTGE
SLFISSEGDRKRQIQPFIREFSLAGKQLQNLPIPKKFLIQAKSGIRNNLALENLTITPNKKYLFTATENALIQDGVKANV
STGSPCRILQYDLIKGKPEKEFLYITEPITSKSNNSGVLKINGLVELMALDDTHLLSLERSFSLDTGNVIKLFQVDLSNA
DNIQKINSLNTHLTPISPAQKELLLDLSNLELISDNIEGMTFGPRLADGRRSLILVSDNNFNPLQLTQFLIFSTKL

Specific function: Unknown

COG id: COG4222

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44585; Mature: 44585

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSNFEINYRVYIKLLCYLYEIMKNPKNQRYKYLISTLVTCLVILLITAILIKSMTQANI
CCCCEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PKITFLGEVNFPTGLKFKNTEVGGLSGITYNQDKQIYYAISDDRSRKAAARFYTLKIDLD
CEEEEEEECCCCCCCEECCCCCCCEECCEECCCCEEEEEECCCCCCCEEEEEEEEEEEEE
INKISEETVTFIDVTTLLNENSQPFPSLSIDTEGIALTGESLFISSEGDRKRQIQPFIRE
HHHCCCCEEEEEEEEEHHCCCCCCCCCEEECCCCEEEECCEEEEECCCCCHHHHHHHHHH
FSLAGKQLQNLPIPKKFLIQAKSGIRNNLALENLTITPNKKYLFTATENALIQDGVKANV
HHHHHHHHHCCCCCHHHHHEECCCCCCCCEEEEEEECCCCCEEEEECCCCHHHCCCEECC
STGSPCRILQYDLIKGKPEKEFLYITEPITSKSNNSGVLKINGLVELMALDDTHLLSLER
CCCCCEEEEEEHHHCCCCCCCEEEEECCCCCCCCCCCEEEECCEEEEEEECCCEEEEEEC
SFSLDTGNVIKLFQVDLSNADNIQKINSLNTHLTPISPAQKELLLDLSNLELISDNIEGM
CCCCCCCCEEEEEEEECCCCCCHHHHHCCCCCCCCCCCCHHHHHEECCCCEEEECCCCCE
TFGPRLADGRRSLILVSDNNFNPLQLTQFLIFSTKL
EECCCCCCCCEEEEEEECCCCCHHHHHEEEEEECCC
>Mature Secondary Structure
MYSNFEINYRVYIKLLCYLYEIMKNPKNQRYKYLISTLVTCLVILLITAILIKSMTQANI
CCCCEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PKITFLGEVNFPTGLKFKNTEVGGLSGITYNQDKQIYYAISDDRSRKAAARFYTLKIDLD
CEEEEEEECCCCCCCEECCCCCCCEECCEECCCCEEEEEECCCCCCCEEEEEEEEEEEEE
INKISEETVTFIDVTTLLNENSQPFPSLSIDTEGIALTGESLFISSEGDRKRQIQPFIRE
HHHCCCCEEEEEEEEEHHCCCCCCCCCEEECCCCEEEECCEEEEECCCCCHHHHHHHHHH
FSLAGKQLQNLPIPKKFLIQAKSGIRNNLALENLTITPNKKYLFTATENALIQDGVKANV
HHHHHHHHHCCCCCHHHHHEECCCCCCCCEEEEEEECCCCCEEEEECCCCHHHCCCEECC
STGSPCRILQYDLIKGKPEKEFLYITEPITSKSNNSGVLKINGLVELMALDDTHLLSLER
CCCCCEEEEEEHHHCCCCCCCEEEEECCCCCCCCCCCEEEECCEEEEEEECCCEEEEEEC
SFSLDTGNVIKLFQVDLSNADNIQKINSLNTHLTPISPAQKELLLDLSNLELISDNIEGM
CCCCCCCCEEEEEEEECCCCCCHHHHHCCCCCCCCCCCCHHHHHEECCCCEEEECCCCCE
TFGPRLADGRRSLILVSDNNFNPLQLTQFLIFSTKL
EECCCCCCCCEEEEEEECCCCCHHHHHEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA