| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474090
Identifier: 113474090
GI number: 113474090
Start: 279451
End: 280641
Strand: Direct
Name: 113474090
Synonym: Tery_0187
Alternate gene names: NA
Gene position: 279451-280641 (Clockwise)
Preceding gene: 113474089
Following gene: 113474091
Centisome position: 3.61
GC content: 29.3
Gene sequence:
>1191_bases ATGTATAGCAATTTTGAGATAAACTATAGAGTTTATATCAAACTTTTATGCTATTTATATGAAATTATGAAAAATCCTAA AAATCAAAGATATAAATATTTAATTTCTACCTTAGTTACTTGTTTGGTTATTCTTCTAATTACAGCCATATTGATTAAAT CAATGACTCAAGCAAATATTCCTAAAATAACTTTTTTAGGAGAGGTGAATTTTCCCACAGGTTTAAAATTTAAAAATACA GAAGTAGGTGGACTTTCTGGCATAACCTACAATCAAGATAAACAAATTTATTATGCTATTTCTGATGACCGTAGTAGGAA AGCAGCAGCGCGATTTTATACTCTTAAAATTGACCTAGATATAAATAAAATTTCGGAGGAAACTGTAACTTTTATAGATG TTACAACTTTATTAAATGAAAATAGCCAACCATTTCCCTCTTTAAGTATTGATACAGAAGGAATTGCTTTGACTGGAGAG AGTTTATTTATATCTTCTGAAGGAGATAGAAAACGTCAAATACAACCATTTATTAGAGAATTTTCTTTAGCAGGTAAACA ACTACAAAATTTACCAATTCCCAAAAAGTTTCTGATACAAGCTAAAAGTGGAATCAGAAATAATCTAGCCTTAGAAAATT TAACTATTACTCCTAACAAAAAATACCTCTTCACTGCTACAGAAAATGCTTTAATTCAAGATGGTGTAAAAGCAAATGTT TCCACTGGTAGTCCTTGTAGAATTTTACAGTATGATTTAATTAAAGGTAAGCCAGAAAAAGAGTTTTTATATATCACAGA ACCTATTACTTCTAAATCTAATAATTCAGGTGTTTTAAAGATTAATGGCTTAGTAGAATTAATGGCGTTAGATGATACTC ATCTTTTAAGTCTAGAAAGATCTTTTTCTCTAGATACTGGAAATGTGATTAAACTATTTCAAGTTGATCTGTCAAATGCA GATAATATTCAAAAAATTAATAGCTTAAATACTCATTTAACTCCTATTTCTCCAGCACAAAAAGAATTATTATTAGATTT GAGTAATCTAGAATTAATCTCAGACAATATTGAAGGAATGACCTTTGGCCCAAGATTGGCAGATGGTCGGCGATCGCTCA TCCTAGTCAGCGATAATAATTTTAACCCCTTACAATTGACTCAATTTCTCATTTTCAGCACTAAACTCTAG
Upstream 100 bases:
>100_bases CCTAAATGGTAAAACTCTTACATTTATAATTAATTGAAGAAATTTAAGACAGCTATATTTATGATTTATCCCATTTTTTT TCAAAATTTATGTTCCTATT
Downstream 100 bases:
>100_bases CTGTTCAAGTCAAAAACCATTTTGGTTATCAGTTATTAGTTATTAGTATCTAGTTGTGACCAAAACATTTTAAAGTGTCA TGCATAAATTATGTATTTTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 396; Mature: 396
Protein sequence:
>396_residues MYSNFEINYRVYIKLLCYLYEIMKNPKNQRYKYLISTLVTCLVILLITAILIKSMTQANIPKITFLGEVNFPTGLKFKNT EVGGLSGITYNQDKQIYYAISDDRSRKAAARFYTLKIDLDINKISEETVTFIDVTTLLNENSQPFPSLSIDTEGIALTGE SLFISSEGDRKRQIQPFIREFSLAGKQLQNLPIPKKFLIQAKSGIRNNLALENLTITPNKKYLFTATENALIQDGVKANV STGSPCRILQYDLIKGKPEKEFLYITEPITSKSNNSGVLKINGLVELMALDDTHLLSLERSFSLDTGNVIKLFQVDLSNA DNIQKINSLNTHLTPISPAQKELLLDLSNLELISDNIEGMTFGPRLADGRRSLILVSDNNFNPLQLTQFLIFSTKL
Sequences:
>Translated_396_residues MYSNFEINYRVYIKLLCYLYEIMKNPKNQRYKYLISTLVTCLVILLITAILIKSMTQANIPKITFLGEVNFPTGLKFKNT EVGGLSGITYNQDKQIYYAISDDRSRKAAARFYTLKIDLDINKISEETVTFIDVTTLLNENSQPFPSLSIDTEGIALTGE SLFISSEGDRKRQIQPFIREFSLAGKQLQNLPIPKKFLIQAKSGIRNNLALENLTITPNKKYLFTATENALIQDGVKANV STGSPCRILQYDLIKGKPEKEFLYITEPITSKSNNSGVLKINGLVELMALDDTHLLSLERSFSLDTGNVIKLFQVDLSNA DNIQKINSLNTHLTPISPAQKELLLDLSNLELISDNIEGMTFGPRLADGRRSLILVSDNNFNPLQLTQFLIFSTKL >Mature_396_residues MYSNFEINYRVYIKLLCYLYEIMKNPKNQRYKYLISTLVTCLVILLITAILIKSMTQANIPKITFLGEVNFPTGLKFKNT EVGGLSGITYNQDKQIYYAISDDRSRKAAARFYTLKIDLDINKISEETVTFIDVTTLLNENSQPFPSLSIDTEGIALTGE SLFISSEGDRKRQIQPFIREFSLAGKQLQNLPIPKKFLIQAKSGIRNNLALENLTITPNKKYLFTATENALIQDGVKANV STGSPCRILQYDLIKGKPEKEFLYITEPITSKSNNSGVLKINGLVELMALDDTHLLSLERSFSLDTGNVIKLFQVDLSNA DNIQKINSLNTHLTPISPAQKELLLDLSNLELISDNIEGMTFGPRLADGRRSLILVSDNNFNPLQLTQFLIFSTKL
Specific function: Unknown
COG id: COG4222
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44585; Mature: 44585
Theoretical pI: Translated: 8.66; Mature: 8.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYSNFEINYRVYIKLLCYLYEIMKNPKNQRYKYLISTLVTCLVILLITAILIKSMTQANI CCCCEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PKITFLGEVNFPTGLKFKNTEVGGLSGITYNQDKQIYYAISDDRSRKAAARFYTLKIDLD CEEEEEEECCCCCCCEECCCCCCCEECCEECCCCEEEEEECCCCCCCEEEEEEEEEEEEE INKISEETVTFIDVTTLLNENSQPFPSLSIDTEGIALTGESLFISSEGDRKRQIQPFIRE HHHCCCCEEEEEEEEEHHCCCCCCCCCEEECCCCEEEECCEEEEECCCCCHHHHHHHHHH FSLAGKQLQNLPIPKKFLIQAKSGIRNNLALENLTITPNKKYLFTATENALIQDGVKANV HHHHHHHHHCCCCCHHHHHEECCCCCCCCEEEEEEECCCCCEEEEECCCCHHHCCCEECC STGSPCRILQYDLIKGKPEKEFLYITEPITSKSNNSGVLKINGLVELMALDDTHLLSLER CCCCCEEEEEEHHHCCCCCCCEEEEECCCCCCCCCCCEEEECCEEEEEEECCCEEEEEEC SFSLDTGNVIKLFQVDLSNADNIQKINSLNTHLTPISPAQKELLLDLSNLELISDNIEGM CCCCCCCCEEEEEEEECCCCCCHHHHHCCCCCCCCCCCCHHHHHEECCCCEEEECCCCCE TFGPRLADGRRSLILVSDNNFNPLQLTQFLIFSTKL EECCCCCCCCEEEEEEECCCCCHHHHHEEEEEECCC >Mature Secondary Structure MYSNFEINYRVYIKLLCYLYEIMKNPKNQRYKYLISTLVTCLVILLITAILIKSMTQANI CCCCEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PKITFLGEVNFPTGLKFKNTEVGGLSGITYNQDKQIYYAISDDRSRKAAARFYTLKIDLD CEEEEEEECCCCCCCEECCCCCCCEECCEECCCCEEEEEECCCCCCCEEEEEEEEEEEEE INKISEETVTFIDVTTLLNENSQPFPSLSIDTEGIALTGESLFISSEGDRKRQIQPFIRE HHHCCCCEEEEEEEEEHHCCCCCCCCCEEECCCCEEEECCEEEEECCCCCHHHHHHHHHH FSLAGKQLQNLPIPKKFLIQAKSGIRNNLALENLTITPNKKYLFTATENALIQDGVKANV HHHHHHHHHCCCCCHHHHHEECCCCCCCCEEEEEEECCCCCEEEEECCCCHHHCCCEECC STGSPCRILQYDLIKGKPEKEFLYITEPITSKSNNSGVLKINGLVELMALDDTHLLSLER CCCCCEEEEEEHHHCCCCCCCEEEEECCCCCCCCCCCEEEECCEEEEEEECCCEEEEEEC SFSLDTGNVIKLFQVDLSNADNIQKINSLNTHLTPISPAQKELLLDLSNLELISDNIEGM CCCCCCCCEEEEEEEECCCCCCHHHHHCCCCCCCCCCCCHHHHHEECCCCEEEECCCCCE TFGPRLADGRRSLILVSDNNFNPLQLTQFLIFSTKL EECCCCCCCCEEEEEEECCCCCHHHHHEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA