Click here to switch to the map view.

The map label for this gene is (psbA1 [H]

Identifier: 113474085

GI number: 113474085

Start: 269811

End: 270872

Strand: Direct

Name: (psbA1 [H]

Synonym: Tery_0182

Alternate gene names: 113474085

Gene position: 269811-270872 (Clockwise)

Preceding gene: 113474084

Following gene: 113474086

Centisome position: 3.48

GC content: 44.16

Gene sequence:

>1062_bases
ATGACTACAACATTACAACAGCGTGAAAGCGCTAACGTATGGGAAAAGTTTTGTAGTTGGGTAACAAGCACAGACAACCG
CATATATGTAGGTTGGTTCGGTGTATTAATGATCCCTACTCTCTTAACTGCAACCATCTGTTACATCATCGCATTTGTAG
CAGCACCTCCAGTAGATATTGATGGTATCCGTGAGCCCGTCGCTGGCTCTCTAATGTTCGGAAACAACATAATTTCCGGA
GCAGTAGTACCTTCCTCAAACGCTATCGGTCTACACTTCTATCCCATCTGGGAAGCAGCTAGCTTAGATGAGTGGCTATA
CAACGGTGGCCCATACCAGCTAGTAATTTTCCACTTCCTCATCGGAATCTTTACTTACATGGGTCGTGAGTGGGAATTAT
CTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTAGCTTACTCTGCACCAGTAGCAGCAGCAACAGCAGTATTCTTAATC
TATCCTATCGGTCAAGGAAGCTTCTCTGATGGAATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATCGTATTCCA
AGCAGAGCACAACATCTTAATGCACCCATTCCACATGCTAGGAGTAGCTGGTGTATTCGGTGGTTCTTTATTCAGTGCAA
TGCACGGAAGCTTGGTAACATCTTCCTTAGTACGTGAGACAACTGAAACTGAGTCTCAGAACTATGGTTACAAGTTCGGT
CAAGAGGAAGAAACTTATAACATCGTAGCAGCTCATGGCTACTTCGGTCGTTTAATCTTCCAATATGCTTCATTCAACAA
CAGCCGTTCTCTACACTTCTTCTTAGGAGCATGGCCAGTAGTAGGAATATGGTTCACAGCATTAGGTGTGAGCACAATGG
CCTTCAACTTAAACGGTTTCAACTTCAACCAGTCCATCATTGACTCCAGCGGTCGCGTAATCAATACTTGGGCAGATATC
ATTAACCGCGCTAACTTAGGAATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTAGATCTAGCAGCAGTAGA
AGCACCTTCTATCAAAGGTTAA

Upstream 100 bases:

>100_bases
AAAGTAGTTAAAGTATCTATAACGGTCAAGGAAAACAAATCCAAAAGACCGGTGCATCTTGAAAACTTCATATACAAAGC
ACAGCAATCATAAATTAATT

Downstream 100 bases:

>100_bases
TCTCTAACTAGACTTAAATAGTTAAAAAAAAGCTCTCCAGATGGAGGGCTTTTTTTATTTGTTTAATACCCAAAAAATTA
GCTCAAGGGTAAAAAAAAGA

Product: photosystem q(b) protein

Products: NA

Alternate protein names: 32 kDa thylakoid membrane protein; Photosystem II protein D1 [H]

Number of amino acids: Translated: 353; Mature: 352

Protein sequence:

>353_residues
MTTTLQQRESANVWEKFCSWVTSTDNRIYVGWFGVLMIPTLLTATICYIIAFVAAPPVDIDGIREPVAGSLMFGNNIISG
AVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVIFHFLIGIFTYMGREWELSYRLGMRPWICVAYSAPVAAATAVFLI
YPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLVRETTETESQNYGYKFG
QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLGAWPVVGIWFTALGVSTMAFNLNGFNFNQSIIDSSGRVINTWADI
INRANLGMEVMHERNAHNFPLDLAAVEAPSIKG

Sequences:

>Translated_353_residues
MTTTLQQRESANVWEKFCSWVTSTDNRIYVGWFGVLMIPTLLTATICYIIAFVAAPPVDIDGIREPVAGSLMFGNNIISG
AVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVIFHFLIGIFTYMGREWELSYRLGMRPWICVAYSAPVAAATAVFLI
YPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLVRETTETESQNYGYKFG
QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLGAWPVVGIWFTALGVSTMAFNLNGFNFNQSIIDSSGRVINTWADI
INRANLGMEVMHERNAHNFPLDLAAVEAPSIKG
>Mature_352_residues
TTTLQQRESANVWEKFCSWVTSTDNRIYVGWFGVLMIPTLLTATICYIIAFVAAPPVDIDGIREPVAGSLMFGNNIISGA
VVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVIFHFLIGIFTYMGREWELSYRLGMRPWICVAYSAPVAAATAVFLIY
PIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLVRETTETESQNYGYKFGQ
EEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLGAWPVVGIWFTALGVSTMAFNLNGFNFNQSIIDSSGRVINTWADII
NRANLGMEVMHERNAHNFPLDLAAVEAPSIKG

Specific function: This is one of the two reaction center proteins of photosystem II [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the reaction center pufL/M/psbA/D family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000484
- InterPro:   IPR005867 [H]

Pfam domain/function: PF00124 Photo_RC [H]

EC number: NA

Molecular weight: Translated: 39079; Mature: 38948

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: PS00244 REACTION_CENTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTLQQRESANVWEKFCSWVTSTDNRIYVGWFGVLMIPTLLTATICYIIAFVAAPPVDI
CCCCCHHHHCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DGIREPVAGSLMFGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVIFHFL
CCCCCCCCCEEEECCCEECCEEECCCCCEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHH
IGIFTYMGREWELSYRLGMRPWICVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF
HHHHHHCCCCEEEEEEECCCCEEEEEECCCHHHHEEEEEEEECCCCCCCCCCCEEECCCE
NFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLVRETTETESQNYGYKFG
EEEEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLGAWPVVGIWFTALGVSTMAFNLNGF
CCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEECCC
NFNQSIIDSSGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEAPSIKG
CCCHHHHCCCCCEEEHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEECCCCCCC
>Mature Secondary Structure 
TTTLQQRESANVWEKFCSWVTSTDNRIYVGWFGVLMIPTLLTATICYIIAFVAAPPVDI
CCCCHHHHCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DGIREPVAGSLMFGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVIFHFL
CCCCCCCCCEEEECCCEECCEEECCCCCEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHH
IGIFTYMGREWELSYRLGMRPWICVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF
HHHHHHCCCCEEEEEEECCCCEEEEEECCCHHHHEEEEEEEECCCCCCCCCCCEEECCCE
NFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLVRETTETESQNYGYKFG
EEEEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLGAWPVVGIWFTALGVSTMAFNLNGF
CCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEECCC
NFNQSIIDSSGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEAPSIKG
CCCHHHHCCCCCEEEHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2643058 [H]