Click here to switch to the map view.

The map label for this gene is rutD [H]

Identifier: 110835310

GI number: 110835310

Start: 2773448

End: 2774365

Strand: Reverse

Name: rutD [H]

Synonym: ABO_2449

Alternate gene names: 110835310

Gene position: 2774365-2773448 (Counterclockwise)

Preceding gene: 110835312

Following gene: 110835306

Centisome position: 88.92

GC content: 57.63

Gene sequence:

>918_bases
ATGCAGTCAGGTACGGTCGCGAGTAATGGCATCGAGCTTTTTTATGAGAGCCGTGGTCCGGAAAACGGGGAGCCCATGGT
CTTCGTCATGGGGCTGTCGGCGCAGATGGTGTTCTGGCCGGATACCTTGCTGGATGCGTTGGCGGCAAAAGGCTATCGGG
TGATCCGGTTTGATAACCGTGATGTGGGTAAATCCACCCAAATCCGCAAGCCGATAAAGCAGGGGCCGGTGTCGGCGATC
CTGCGCCGCATAATCGGTCTGCCGGTGGAGAGCCCTTACACCTTGCACGATATGGTTGCCGATACGGTGGGCCTGCTAGA
TGCATTAAATATTGAGCGGGCGCATTTTGTTGGTGCCTCCATGGGCGGGATGATCAGCCAGTTGATGGCGGGCACTCACC
CGGAGCGGGTGCTGTCCCTCACCTCAATCATGTCCAGTAATAACAGCTCATTACTGCCACCGCCGAAACCCTCGGCGTTA
AGAGTTTTAATTGCCCCGCGCGTGAAAGTGGAAACCGAAGAGCAGTTCGTTACCTTCGGCTTGGAAATGATGAGTAAGCT
GGCCGGTACCTTGCCCCAGGGTAAGGAGGAGCTGGCGGCCATGTATCGGGCTGCCTGGGCGCGAGGCATTAACCCGAGAG
GTATCCGCAACCAGTTTCTGGCGATCACGGCCACCGGTTCTTTAAGCAAAACCTTGAAGCAGATCCAATGCCCGACCACG
GTGATCCATGGCGGCGCTGACCCGTTAATTCGTCCTGCCGGTGGCAAGGCATCTGCCCGCGCTATTCGCGGTGCCAAGCT
GGTTATTATTCCCGGCATGGGCCATGATTTTCCGCCATCGGTGATTGATCGCATCGGTGAGCTGATTGCGGAAACTGCCG
GGCGAGCCAATTCCGTAGTGCCGCCGGCGGTAGGGTGA

Upstream 100 bases:

>100_bases
GCGCTTGAGGTTTGAGGCACCCTTTTTTATGTTGATCTATTGGCGGTGGCTCGGTTTCGACACTGCATCACAAGAATAGG
CGAGCATAAAGGGTACGCAT

Downstream 100 bases:

>100_bases
AATGCCGTTGTAAGCAAAAAGTTAACAGCCGCAACGCAGGGAGCGGTACGGGCTAAATAAAAAGAGGCCGTGCGCAGAAA
TTGGGCGCGGTTTTTTTATG

Product: alpha/beta fold family hydrolase

Products: NA

Alternate protein names: Aminohydrolase [H]

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MQSGTVASNGIELFYESRGPENGEPMVFVMGLSAQMVFWPDTLLDALAAKGYRVIRFDNRDVGKSTQIRKPIKQGPVSAI
LRRIIGLPVESPYTLHDMVADTVGLLDALNIERAHFVGASMGGMISQLMAGTHPERVLSLTSIMSSNNSSLLPPPKPSAL
RVLIAPRVKVETEEQFVTFGLEMMSKLAGTLPQGKEELAAMYRAAWARGINPRGIRNQFLAITATGSLSKTLKQIQCPTT
VIHGGADPLIRPAGGKASARAIRGAKLVIIPGMGHDFPPSVIDRIGELIAETAGRANSVVPPAVG

Sequences:

>Translated_305_residues
MQSGTVASNGIELFYESRGPENGEPMVFVMGLSAQMVFWPDTLLDALAAKGYRVIRFDNRDVGKSTQIRKPIKQGPVSAI
LRRIIGLPVESPYTLHDMVADTVGLLDALNIERAHFVGASMGGMISQLMAGTHPERVLSLTSIMSSNNSSLLPPPKPSAL
RVLIAPRVKVETEEQFVTFGLEMMSKLAGTLPQGKEELAAMYRAAWARGINPRGIRNQFLAITATGSLSKTLKQIQCPTT
VIHGGADPLIRPAGGKASARAIRGAKLVIIPGMGHDFPPSVIDRIGELIAETAGRANSVVPPAVG
>Mature_305_residues
MQSGTVASNGIELFYESRGPENGEPMVFVMGLSAQMVFWPDTLLDALAAKGYRVIRFDNRDVGKSTQIRKPIKQGPVSAI
LRRIIGLPVESPYTLHDMVADTVGLLDALNIERAHFVGASMGGMISQLMAGTHPERVLSLTSIMSSNNSSLLPPPKPSAL
RVLIAPRVKVETEEQFVTFGLEMMSKLAGTLPQGKEELAAMYRAAWARGINPRGIRNQFLAITATGSLSKTLKQIQCPTT
VIHGGADPLIRPAGGKASARAIRGAKLVIIPGMGHDFPPSVIDRIGELIAETAGRANSVVPPAVG

Specific function: May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Hydrolase RutD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR019913 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 32554; Mature: 32554

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSGTVASNGIELFYESRGPENGEPMVFVMGLSAQMVFWPDTLLDALAAKGYRVIRFDNR
CCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCEEEECCHHHHHHHHHCCEEEEEECCC
DVGKSTQIRKPIKQGPVSAILRRIIGLPVESPYTLHDMVADTVGLLDALNIERAHFVGAS
CCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCH
MGGMISQLMAGTHPERVLSLTSIMSSNNSSLLPPPKPSALRVLIAPRVKVETEEQFVTFG
HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEECCHHHHHHHH
LEMMSKLAGTLPQGKEELAAMYRAAWARGINPRGIRNQFLAITATGSLSKTLKQIQCPTT
HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCE
VIHGGADPLIRPAGGKASARAIRGAKLVIIPGMGHDFPPSVIDRIGELIAETAGRANSVV
EEECCCCCCEECCCCCHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
PPAVG
CCCCC
>Mature Secondary Structure
MQSGTVASNGIELFYESRGPENGEPMVFVMGLSAQMVFWPDTLLDALAAKGYRVIRFDNR
CCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCEEEECCHHHHHHHHHCCEEEEEECCC
DVGKSTQIRKPIKQGPVSAILRRIIGLPVESPYTLHDMVADTVGLLDALNIERAHFVGAS
CCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCH
MGGMISQLMAGTHPERVLSLTSIMSSNNSSLLPPPKPSALRVLIAPRVKVETEEQFVTFG
HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEECCHHHHHHHH
LEMMSKLAGTLPQGKEELAAMYRAAWARGINPRGIRNQFLAITATGSLSKTLKQIQCPTT
HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCE
VIHGGADPLIRPAGGKASARAIRGAKLVIIPGMGHDFPPSVIDRIGELIAETAGRANSVV
EEECCCCCCEECCCCCHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
PPAVG
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA