| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110835236
Identifier: 110835236
GI number: 110835236
Start: 2699648
End: 2700895
Strand: Direct
Name: 110835236
Synonym: ABO_2375
Alternate gene names: NA
Gene position: 2699648-2700895 (Clockwise)
Preceding gene: 110835235
Following gene: 110835239
Centisome position: 86.52
GC content: 58.09
Gene sequence:
>1248_bases ATGAAATTCCGTTTTTTAGCTCCACTGATGGCTGCCAGCTCCCTGAGCCTGGCACACAGTGTGCCCAGCCAAAATAACCC CACCACCGTAGAAGCCAGTCTCGCCGCCACATGGCGGTCCGCTAACGTGATTGGCGATTACGATTACTGGCAAATCCCTG GCACCATGATGGGAGGCGAAGCTTGGCCGGCGGAAAAAGGGGCGCAGATTGATGAACTGAACCTGGGGGTCGCTCACCGT ATTGATGAGAATTTCTACGGGGTCATCAAATTCAACCACCACGCCGGCGGTGATGATGATCACGGCGGTGCCGAGCTAGA GCATGCGTATGTCGGCTGGGTCTGTTGTGACGATACCGGACCCTGGCTGGTGGAGGCAGGCAGGATGTCTGCCCAATTCT CCCCTGGGCTGGCTCAGCATTCCGTAGACCGGCTCGCCAGCGAAAGTCCGCTAGCGCTGGATGTGCTGTTCGGGCGCGAT TTCCATGATGATGGCTTACGCTTCTGGTGGCATCAAATGGCAGGCTTTTCCCTTGGCGCTGAGGTCTGGAAAGGCAAAGC CTTCCCCGCTACCGACACAGAGAATGGCGGCGCCTGGGATGTATTTGGCCAATACCAGTGGCAAGGCGAACGGTTGGCGC TAACGCTGGGCGGGTGGTTCTACAGCGCAGAAGCGGAGTCACGTAGCGACCATCGCTACGGAGGCGGCCATCAACATGTA CCGGTAGCACCTCCAGGCGAAATCGCCACCCTCTTTCCGGACACACGCTACACCGGCGAAACAGAAATCGCCGGCGCTCA CTTCAAGCTGGGATATAAACTCAATCCGGATTGGGCATTAGCCCTCGACGGTGAGTGGATGCAGGCAAAACCCGATGGCG TAGTGCATGACGGCATCGGCCGTGAAGCAAACTTCACCGCCACCCAGCAAGGCGGCTGGCTACAGCCCTCCATTACTTGG CGAGCGCATACCTTTGGGCTGCGTGCAGAACAACTGAACACCGACAACAAGCTCACCGGTGCCGCAGCGCCACAATTAGC GCAGGACAGCGGGTTAGCCAATCCTCTTGAGCATGATCCGCAGCGCCTCACCGCCATCTGGCGGTGGCAATGGCGGAAAA ATATCGCCATCCGCGCGGAAGCCGTTCAGGACGAGTCCCTGCCCGAAAAAGAGCATCGCTGGAACCTGGGAATTGTCTGG AAAGAAACCTTATGGTCTAGCAAAACGGGGCTGCGCGGTCATCATTAA
Upstream 100 bases:
>100_bases ATGTGGTGGCTTTCCTGGAATCGCTCACCGACGAAGAATTCATTAATAACCCGCGTTTTTCCAACCCCTGGACCGAGAGC AGCCCGCAGGACACCACCCC
Downstream 100 bases:
>100_bases AGCGCCGCGGCCAATTGCGTCCATCCCCGATCGTGCCCAGGCAAACCAAAACGCAATGCGGGCACATCGGGGAAAAGCCG AACCAACACGCCCTGCCGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 415; Mature: 415
Protein sequence:
>415_residues MKFRFLAPLMAASSLSLAHSVPSQNNPTTVEASLAATWRSANVIGDYDYWQIPGTMMGGEAWPAEKGAQIDELNLGVAHR IDENFYGVIKFNHHAGGDDDHGGAELEHAYVGWVCCDDTGPWLVEAGRMSAQFSPGLAQHSVDRLASESPLALDVLFGRD FHDDGLRFWWHQMAGFSLGAEVWKGKAFPATDTENGGAWDVFGQYQWQGERLALTLGGWFYSAEAESRSDHRYGGGHQHV PVAPPGEIATLFPDTRYTGETEIAGAHFKLGYKLNPDWALALDGEWMQAKPDGVVHDGIGREANFTATQQGGWLQPSITW RAHTFGLRAEQLNTDNKLTGAAAPQLAQDSGLANPLEHDPQRLTAIWRWQWRKNIAIRAEAVQDESLPEKEHRWNLGIVW KETLWSSKTGLRGHH
Sequences:
>Translated_415_residues MKFRFLAPLMAASSLSLAHSVPSQNNPTTVEASLAATWRSANVIGDYDYWQIPGTMMGGEAWPAEKGAQIDELNLGVAHR IDENFYGVIKFNHHAGGDDDHGGAELEHAYVGWVCCDDTGPWLVEAGRMSAQFSPGLAQHSVDRLASESPLALDVLFGRD FHDDGLRFWWHQMAGFSLGAEVWKGKAFPATDTENGGAWDVFGQYQWQGERLALTLGGWFYSAEAESRSDHRYGGGHQHV PVAPPGEIATLFPDTRYTGETEIAGAHFKLGYKLNPDWALALDGEWMQAKPDGVVHDGIGREANFTATQQGGWLQPSITW RAHTFGLRAEQLNTDNKLTGAAAPQLAQDSGLANPLEHDPQRLTAIWRWQWRKNIAIRAEAVQDESLPEKEHRWNLGIVW KETLWSSKTGLRGHH >Mature_415_residues MKFRFLAPLMAASSLSLAHSVPSQNNPTTVEASLAATWRSANVIGDYDYWQIPGTMMGGEAWPAEKGAQIDELNLGVAHR IDENFYGVIKFNHHAGGDDDHGGAELEHAYVGWVCCDDTGPWLVEAGRMSAQFSPGLAQHSVDRLASESPLALDVLFGRD FHDDGLRFWWHQMAGFSLGAEVWKGKAFPATDTENGGAWDVFGQYQWQGERLALTLGGWFYSAEAESRSDHRYGGGHQHV PVAPPGEIATLFPDTRYTGETEIAGAHFKLGYKLNPDWALALDGEWMQAKPDGVVHDGIGREANFTATQQGGWLQPSITW RAHTFGLRAEQLNTDNKLTGAAAPQLAQDSGLANPLEHDPQRLTAIWRWQWRKNIAIRAEAVQDESLPEKEHRWNLGIVW KETLWSSKTGLRGHH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45984; Mature: 45984
Theoretical pI: Translated: 5.49; Mature: 5.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFRFLAPLMAASSLSLAHSVPSQNNPTTVEASLAATWRSANVIGDYDYWQIPGTMMGGE CCEEEHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCEEECCCEEECCCEEECCC AWPAEKGAQIDELNLGVAHRIDENFYGVIKFNHHAGGDDDHGGAELEHAYVGWVCCDDTG CCCCCCCCEEEEECCCCCEECCCCEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCC PWLVEAGRMSAQFSPGLAQHSVDRLASESPLALDVLFGRDFHDDGLRFWWHQMAGFSLGA CEEEECCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCH EVWKGKAFPATDTENGGAWDVFGQYQWQGERLALTLGGWFYSAEAESRSDHRYGGGHQHV HHHCCCCCCCCCCCCCCEEEECEEEEECCCEEEEEECCEEEECCCCCCCCCCCCCCCCCC PVAPPGEIATLFPDTRYTGETEIAGAHFKLGYKLNPDWALALDGEWMQAKPDGVVHDGIG CCCCCCCEEEECCCCCCCCCCEECCCEEEEEEEECCCEEEEECCCEEECCCCCCEECCCC REANFTATQQGGWLQPSITWRAHTFGLRAEQLNTDNKLTGAAAPQLAQDSGLANPLEHDP CCCCEEEECCCCEECCCEEEEEEEECCCHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCH QRLTAIWRWQWRKNIAIRAEAVQDESLPEKEHRWNLGIVWKETLWSSKTGLRGHH HHEEEEEEEEECCCEEEEEEECCCCCCCCHHHCCCEEEEEHHHHCCCCCCCCCCC >Mature Secondary Structure MKFRFLAPLMAASSLSLAHSVPSQNNPTTVEASLAATWRSANVIGDYDYWQIPGTMMGGE CCEEEHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCEEECCCEEECCCEEECCC AWPAEKGAQIDELNLGVAHRIDENFYGVIKFNHHAGGDDDHGGAELEHAYVGWVCCDDTG CCCCCCCCEEEEECCCCCEECCCCEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCC PWLVEAGRMSAQFSPGLAQHSVDRLASESPLALDVLFGRDFHDDGLRFWWHQMAGFSLGA CEEEECCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCH EVWKGKAFPATDTENGGAWDVFGQYQWQGERLALTLGGWFYSAEAESRSDHRYGGGHQHV HHHCCCCCCCCCCCCCCEEEECEEEEECCCEEEEEECCEEEECCCCCCCCCCCCCCCCCC PVAPPGEIATLFPDTRYTGETEIAGAHFKLGYKLNPDWALALDGEWMQAKPDGVVHDGIG CCCCCCCEEEECCCCCCCCCCEECCCEEEEEEEECCCEEEEECCCEEECCCCCCEECCCC REANFTATQQGGWLQPSITWRAHTFGLRAEQLNTDNKLTGAAAPQLAQDSGLANPLEHDP CCCCEEEECCCCEECCCEEEEEEEECCCHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCH QRLTAIWRWQWRKNIAIRAEAVQDESLPEKEHRWNLGIVWKETLWSSKTGLRGHH HHEEEEEEEEECCCEEEEEEECCCCCCCCHHHCCCEEEEEHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA