| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is hmuU [H]
Identifier: 110835230
GI number: 110835230
Start: 2693231
End: 2694247
Strand: Reverse
Name: hmuU [H]
Synonym: ABO_2369
Alternate gene names: 110835230
Gene position: 2694247-2693231 (Counterclockwise)
Preceding gene: 110835231
Following gene: 110835229
Centisome position: 86.35
GC content: 62.14
Gene sequence:
>1017_bases GTGCCCGCGCCCTGTGTCGGCATTTGGAAAGTGCCCGTGCTCGCCATTAAGTCGCCGACGCTTGCTACCTTATTCGCGCT GACGGCCCTGGGGCTGTTGGCGTTATTACTGTCGGTGGCGGTGGGCAGTGTATCGATTTCACTGCAGGATCTGTGGGCTG TGGCGAGCGGTGGCGGTAGTGACCTGCATCGGGAACTGATTATGTCGTTGCGCGCGCCCCGTGCGCTGGCGGCGTTCTCC ACGGGGGGGCTGCTAGCCCTGGCCGGGGCGCTGATGCAGGTGTTGTTGCGTAATCCGCTGGCGGACCCCTATGTGCTGGG TATTTCCGGGGGGGCTGCGGTGGGCGCGCTGGGTGCCATGTTGATTGGTGGCGGCTTGGCGTTAGTGTCCGGCTCGGCGT TTGCCGGTGCTTTGCTATCTACCTTGTTGGTGTTTGGTTTGGCGCAAGGCGGGGGCGGCTGGACCCCGACCAGACTGTTG CTGACGGGCGTTGTGGTGGCCGCCGGTTGGGGCGCGGTAATTACCTTTATGTTGACCATGAGCCCTGCGGATCGGTTGCC GGGCATGCTGTATTGGTTAATGGGAGACTTGAGCTACGCCCGCGCTCCTTACGCAGCCTGGTTAGTGATGATTATCGCGG TGCTGCTGACCCTGCCACTGGGGCGTAGCCTGAATGTGTTGGCGAGGGGGCCGTTACAGGCCGCGGCCTTGGGTATTGCG GTGAAGCCGTTGGAGTGGCTGGTGTATGTCTTGGCCAGTCTGTTGACGGCGGTGGCGGTGACCACGGCCGGGAGTGTGGG GTTTGTCGGCCTGATTGTGCCGCATATGCTGCGGCTACAGTTGGGTAATGATCAGCGCATTATCTTGCCCGCCAGTGTTT TGGCGGGGGGTACCTTGCTGACCGTGGCCGATACTCTGGCGCGTACGGTGATGGCTCCTGAGCAGCTGCCTGTGGGGGTA ATTACGGCCCTATTGGGGGTGCCCACTTTCCTGTTCTTGTTGCATCGCAATCGCTGA
Upstream 100 bases:
>100_bases CCGTGGCGGCAGTTTGCCAGCTTACGGGCGGTAAAAAACGATAATTTGTTTTTTGTTGCGCCGTCCACATTGCAGCGGCC TACCCCGCAAATGCTGATCG
Downstream 100 bases:
>100_bases TTGATTGGGGACGGCATCGCCCGGAACCTGTGTCACCGAAACGGAGAGCGCCATGGCGGTGCTGGACATTGAACATCTGG TTATCGACATCCCCGGTCGC
Product: Fe3+-siderophore ABC transporter permease
Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 338; Mature: 337
Protein sequence:
>338_residues MPAPCVGIWKVPVLAIKSPTLATLFALTALGLLALLLSVAVGSVSISLQDLWAVASGGGSDLHRELIMSLRAPRALAAFS TGGLLALAGALMQVLLRNPLADPYVLGISGGAAVGALGAMLIGGGLALVSGSAFAGALLSTLLVFGLAQGGGGWTPTRLL LTGVVVAAGWGAVITFMLTMSPADRLPGMLYWLMGDLSYARAPYAAWLVMIIAVLLTLPLGRSLNVLARGPLQAAALGIA VKPLEWLVYVLASLLTAVAVTTAGSVGFVGLIVPHMLRLQLGNDQRIILPASVLAGGTLLTVADTLARTVMAPEQLPVGV ITALLGVPTFLFLLHRNR
Sequences:
>Translated_338_residues MPAPCVGIWKVPVLAIKSPTLATLFALTALGLLALLLSVAVGSVSISLQDLWAVASGGGSDLHRELIMSLRAPRALAAFS TGGLLALAGALMQVLLRNPLADPYVLGISGGAAVGALGAMLIGGGLALVSGSAFAGALLSTLLVFGLAQGGGGWTPTRLL LTGVVVAAGWGAVITFMLTMSPADRLPGMLYWLMGDLSYARAPYAAWLVMIIAVLLTLPLGRSLNVLARGPLQAAALGIA VKPLEWLVYVLASLLTAVAVTTAGSVGFVGLIVPHMLRLQLGNDQRIILPASVLAGGTLLTVADTLARTVMAPEQLPVGV ITALLGVPTFLFLLHRNR >Mature_337_residues PAPCVGIWKVPVLAIKSPTLATLFALTALGLLALLLSVAVGSVSISLQDLWAVASGGGSDLHRELIMSLRAPRALAAFST GGLLALAGALMQVLLRNPLADPYVLGISGGAAVGALGAMLIGGGLALVSGSAFAGALLSTLLVFGLAQGGGGWTPTRLLL TGVVVAAGWGAVITFMLTMSPADRLPGMLYWLMGDLSYARAPYAAWLVMIIAVLLTLPLGRSLNVLARGPLQAAALGIAV KPLEWLVYVLASLLTAVAVTTAGSVGFVGLIVPHMLRLQLGNDQRIILPASVLAGGTLLTVADTLARTVMAPEQLPVGVI TALLGVPTFLFLLHRNR
Specific function: Part of the binding-protein-dependent transport system for hemin; probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0609
COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790740, Length=310, Percent_Identity=36.1290322580645, Blast_Score=144, Evalue=6e-36, Organism=Escherichia coli, GI1788004, Length=278, Percent_Identity=37.0503597122302, Blast_Score=128, Evalue=6e-31, Organism=Escherichia coli, GI1790741, Length=333, Percent_Identity=34.8348348348348, Blast_Score=123, Evalue=2e-29, Organism=Escherichia coli, GI1786347, Length=283, Percent_Identity=36.3957597173145, Blast_Score=121, Evalue=8e-29, Organism=Escherichia coli, GI1786805, Length=306, Percent_Identity=37.2549019607843, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI1786804, Length=302, Percent_Identity=32.4503311258278, Blast_Score=82, Evalue=6e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000522 [H]
Pfam domain/function: PF01032 FecCD [H]
EC number: NA
Molecular weight: Translated: 34525; Mature: 34394
Theoretical pI: Translated: 10.57; Mature: 10.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAPCVGIWKVPVLAIKSPTLATLFALTALGLLALLLSVAVGSVSISLQDLWAVASGGGS CCCCCCCHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHCCCCH DLHRELIMSLRAPRALAAFSTGGLLALAGALMQVLLRNPLADPYVLGISGGAAVGALGAM HHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHH LIGGGLALVSGSAFAGALLSTLLVFGLAQGGGGWTPTRLLLTGVVVAAGWGAVITFMLTM HHCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC SPADRLPGMLYWLMGDLSYARAPYAAWLVMIIAVLLTLPLGRSLNVLARGPLQAAALGIA CCHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHHH VKPLEWLVYVLASLLTAVAVTTAGSVGFVGLIVPHMLRLQLGNDQRIILPASVLAGGTLL HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCHHH TVADTLARTVMAPEQLPVGVITALLGVPTFLFLLHRNR HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PAPCVGIWKVPVLAIKSPTLATLFALTALGLLALLLSVAVGSVSISLQDLWAVASGGGS CCCCCCHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHCCCCH DLHRELIMSLRAPRALAAFSTGGLLALAGALMQVLLRNPLADPYVLGISGGAAVGALGAM HHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHH LIGGGLALVSGSAFAGALLSTLLVFGLAQGGGGWTPTRLLLTGVVVAAGWGAVITFMLTM HHCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC SPADRLPGMLYWLMGDLSYARAPYAAWLVMIIAVLLTLPLGRSLNVLARGPLQAAALGIA CCHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHHH VKPLEWLVYVLASLLTAVAVTTAGSVGFVGLIVPHMLRLQLGNDQRIILPASVLAGGTLL HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCHHH TVADTLARTVMAPEQLPVGVITALLGVPTFLFLLHRNR HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]
Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9026634; 11586360; 12142430 [H]