| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110835208
Identifier: 110835208
GI number: 110835208
Start: 2670568
End: 2671341
Strand: Direct
Name: 110835208
Synonym: ABO_2347
Alternate gene names: NA
Gene position: 2670568-2671341 (Clockwise)
Preceding gene: 110835203
Following gene: 110835211
Centisome position: 85.59
GC content: 59.82
Gene sequence:
>774_bases ATGTGCATTGTACTGTTTGACTGGCAACCAGGCTCTGCCACGCCCCTTAGAGTGGCGGCGAATCGGGATGAGTTTCACGC GCGACCCGCAGAACCGGCCCGCTGGCGTGACGGTATTTTTTGTGGCCTAGACCTAACTGCCGGGGGCACGTGGCTGGGGA TTCACCGTAACGGCCGCTTCGCGGGGGTTACCAACTATCGCGAACCCATCACCGACCGCCAACCCGGCGAACGGTCCCGC GGGCTATTACCCTTCGCGTTCCTAAAAGGGGAACAGACGCCAGAACAGTTCAGCCATCACCTCGCCAAGGAACAACATCA CTACGGTGCCTTCAATCTTTTGGTGGGCACAGTTAACGCGGACCCTGAACAGGATAGCCTCTGGTATTTAGGCAACCGAG GCGCAACACCAAGGGCGGTCCGCCCCGGCATTCATGGCCTCAGCAACGGCCTGCTGGACGACCCCTGGCCCAAAGTAGAG CGAGCCAAACAGAATCTGGCCGCCGCCGTTACTGCCGGTGGGAACCTACAACAGCTCCTGCAGGTGGTTGACGACCGCTA TCAACCCAACGACAGCGAGCTGCCAGACACCGGTGTCGGCATCGACCTTGAAAGGCTGATCGCCCCCATTTTTATCCAGT CAGAAACCTACGGCACCCGCGCCAGTAGCGCCGTGATTTTGGACCGAAAACAAGGGCCGCAAATGCTGGAACAGCGGTGG CAACCGGACGGTAACGCGGCCGGCAATCCAAGCCAGAGTTTCACCAAGCGATAG
Upstream 100 bases:
>100_bases CTCATTGACGGACACTGAAAGCCCCTGGGCCTCAGCGCTGGAGCGGTTTTATAGCGGCGAGGATAACGGCAGGTGAGCGA AACAAAGAAAGGAAAAATCA
Downstream 100 bases:
>100_bases CACGCTCTCAAGACGCTCCTTGCACGATCAACCTTTGCGGATGGTTCGTAATCAACCCATTCGAGGCACAACGCGATGTT AAAGGAGCGTGCCCATCTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 257; Mature: 257
Protein sequence:
>257_residues MCIVLFDWQPGSATPLRVAANRDEFHARPAEPARWRDGIFCGLDLTAGGTWLGIHRNGRFAGVTNYREPITDRQPGERSR GLLPFAFLKGEQTPEQFSHHLAKEQHHYGAFNLLVGTVNADPEQDSLWYLGNRGATPRAVRPGIHGLSNGLLDDPWPKVE RAKQNLAAAVTAGGNLQQLLQVVDDRYQPNDSELPDTGVGIDLERLIAPIFIQSETYGTRASSAVILDRKQGPQMLEQRW QPDGNAAGNPSQSFTKR
Sequences:
>Translated_257_residues MCIVLFDWQPGSATPLRVAANRDEFHARPAEPARWRDGIFCGLDLTAGGTWLGIHRNGRFAGVTNYREPITDRQPGERSR GLLPFAFLKGEQTPEQFSHHLAKEQHHYGAFNLLVGTVNADPEQDSLWYLGNRGATPRAVRPGIHGLSNGLLDDPWPKVE RAKQNLAAAVTAGGNLQQLLQVVDDRYQPNDSELPDTGVGIDLERLIAPIFIQSETYGTRASSAVILDRKQGPQMLEQRW QPDGNAAGNPSQSFTKR >Mature_257_residues MCIVLFDWQPGSATPLRVAANRDEFHARPAEPARWRDGIFCGLDLTAGGTWLGIHRNGRFAGVTNYREPITDRQPGERSR GLLPFAFLKGEQTPEQFSHHLAKEQHHYGAFNLLVGTVNADPEQDSLWYLGNRGATPRAVRPGIHGLSNGLLDDPWPKVE RAKQNLAAAVTAGGNLQQLLQVVDDRYQPNDSELPDTGVGIDLERLIAPIFIQSETYGTRASSAVILDRKQGPQMLEQRW QPDGNAAGNPSQSFTKR
Specific function: Unknown
COG id: COG3332
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI190570176, Length=248, Percent_Identity=33.4677419354839, Blast_Score=120, Evalue=1e-27, Organism=Caenorhabditis elegans, GI17566294, Length=260, Percent_Identity=22.6923076923077, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI18859691, Length=264, Percent_Identity=26.8939393939394, Blast_Score=76, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28425; Mature: 28425
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCIVLFDWQPGSATPLRVAANRDEFHARPAEPARWRDGIFCGLDLTAGGTWLGIHRNGRF CEEEEEECCCCCCCCEEEECCCHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCE AGVTNYREPITDRQPGERSRGLLPFAFLKGEQTPEQFSHHLAKEQHHYGAFNLLVGTVNA EECCCCCCCCCCCCCCCHHCCCCEEHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCC DPEQDSLWYLGNRGATPRAVRPGIHGLSNGLLDDPWPKVERAKQNLAAAVTAGGNLQQLL CCCCCCEEEECCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHEEEECCCCHHHHH QVVDDRYQPNDSELPDTGVGIDLERLIAPIFIQSETYGTRASSAVILDRKQGPQMLEQRW HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHEEECCCCCCCCCCEEEEECCCCHHHHHHHC QPDGNAAGNPSQSFTKR CCCCCCCCCCCHHHCCC >Mature Secondary Structure MCIVLFDWQPGSATPLRVAANRDEFHARPAEPARWRDGIFCGLDLTAGGTWLGIHRNGRF CEEEEEECCCCCCCCEEEECCCHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCE AGVTNYREPITDRQPGERSRGLLPFAFLKGEQTPEQFSHHLAKEQHHYGAFNLLVGTVNA EECCCCCCCCCCCCCCCHHCCCCEEHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCC DPEQDSLWYLGNRGATPRAVRPGIHGLSNGLLDDPWPKVERAKQNLAAAVTAGGNLQQLL CCCCCCEEEECCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHEEEECCCCHHHHH QVVDDRYQPNDSELPDTGVGIDLERLIAPIFIQSETYGTRASSAVILDRKQGPQMLEQRW HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHEEECCCCCCCCCCEEEEECCCCHHHHHHHC QPDGNAAGNPSQSFTKR CCCCCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA