| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110835207
Identifier: 110835207
GI number: 110835207
Start: 2669599
End: 2670408
Strand: Reverse
Name: 110835207
Synonym: ABO_2346
Alternate gene names: NA
Gene position: 2670408-2669599 (Counterclockwise)
Preceding gene: 110835209
Following gene: 110835206
Centisome position: 85.59
GC content: 58.27
Gene sequence:
>810_bases GTGGCTGTGCTGGAACTGTTTTTGATTTGTTTGGGCGTGGGTGTGGGCGCAGGCCTGTTGGCTGGAGCGCTAGGCTTGGG GGGTGGTGTGGTTATCGTGCCTGCGCTAATTTTTCTGTTTCGTGGCCTGGGCTTTCCTGATGATCTGGTTGCCAAGATGG CGGTGGCCACATCCCTCAGTACCATCATCGTTACCTCCATCAGTGCGGTACGCGCCCATCACAAGGCCGGGTTTGTGCGC TGGCCTGTGGCGGTGCGCTTGGGGGTGGGCATTGTGTTGGGTGCTTTTGCTGGGGCGTTCATCGCCGATGCGATGAAAGG GGAACTGTTGACCCGTTTGTTTGGTCTGTTTGCCATGTTGATTGCTGTGCAGATGTTGCTGGTGGGCCGCAAGGCGCTAG ATGAAAGCTTGCCGCAACGGGTGCCTGGTACCCCTGGGTTGGCACTGGCGGGAGTGCTCATCGGCACAGGGTCGTCGATT TTTGGTATCGGCGGTGGTTCGTTGACGGTGCCGTTCTTGAGTTGGTGTCGGTTGAAAATGCAGGAAGCGGTAGCGATTTC CTCCGCCTGTGGCCTGCCCATTGCCGTTGCCGGCACGCTGGGGTTTGCGGTGGCCGGCTGGAATGAGCAGCATTTGCCAG AGGGGGCCTTAGGCTATGTGTTTTTGCCTGCCTCAGTCGGTATAGTGCTCACCAGTTTCCCGTTTGCGCGCCTGAGTGCG CGGCTCAGCCATCGGCTGCCGTCCGCTACCTTGAAGAAGGTTTTCGCTCTGGTGCTTTTTGTGCTTGGCCTCAAACTGGC TTTTGGATAA
Upstream 100 bases:
>100_bases CCAGCGCTGAGGCCCAGGGGCTTTCAGTGTCCGTCAATGAGCCCCGGCGCAAGGTGTTGAGCCGTGCTAGCATACCTGCC TTACCCCGAGTTGTGTTGGA
Downstream 100 bases:
>100_bases CAACCTATGGAATTCCCGCATATCGATCCGGTGGCGTTCGCCATTGGCCCCCTGAAAGTGCACTGGTATGGCCTGATGTA TATGTTTGGCTTTGCCGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 269; Mature: 268
Protein sequence:
>269_residues MAVLELFLICLGVGVGAGLLAGALGLGGGVVIVPALIFLFRGLGFPDDLVAKMAVATSLSTIIVTSISAVRAHHKAGFVR WPVAVRLGVGIVLGAFAGAFIADAMKGELLTRLFGLFAMLIAVQMLLVGRKALDESLPQRVPGTPGLALAGVLIGTGSSI FGIGGGSLTVPFLSWCRLKMQEAVAISSACGLPIAVAGTLGFAVAGWNEQHLPEGALGYVFLPASVGIVLTSFPFARLSA RLSHRLPSATLKKVFALVLFVLGLKLAFG
Sequences:
>Translated_269_residues MAVLELFLICLGVGVGAGLLAGALGLGGGVVIVPALIFLFRGLGFPDDLVAKMAVATSLSTIIVTSISAVRAHHKAGFVR WPVAVRLGVGIVLGAFAGAFIADAMKGELLTRLFGLFAMLIAVQMLLVGRKALDESLPQRVPGTPGLALAGVLIGTGSSI FGIGGGSLTVPFLSWCRLKMQEAVAISSACGLPIAVAGTLGFAVAGWNEQHLPEGALGYVFLPASVGIVLTSFPFARLSA RLSHRLPSATLKKVFALVLFVLGLKLAFG >Mature_268_residues AVLELFLICLGVGVGAGLLAGALGLGGGVVIVPALIFLFRGLGFPDDLVAKMAVATSLSTIIVTSISAVRAHHKAGFVRW PVAVRLGVGIVLGAFAGAFIADAMKGELLTRLFGLFAMLIAVQMLLVGRKALDESLPQRVPGTPGLALAGVLIGTGSSIF GIGGGSLTVPFLSWCRLKMQEAVAISSACGLPIAVAGTLGFAVAGWNEQHLPEGALGYVFLPASVGIVLTSFPFARLSAR LSHRLPSATLKKVFALVLFVLGLKLAFG
Specific function: Unknown
COG id: COG0730
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0721 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002781 [H]
Pfam domain/function: PF01925 DUF81 [H]
EC number: NA
Molecular weight: Translated: 27544; Mature: 27412
Theoretical pI: Translated: 10.79; Mature: 10.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVLELFLICLGVGVGAGLLAGALGLGGGVVIVPALIFLFRGLGFPDDLVAKMAVATSLS CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH TIIVTSISAVRAHHKAGFVRWPVAVRLGVGIVLGAFAGAFIADAMKGELLTRLFGLFAML HHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IAVQMLLVGRKALDESLPQRVPGTPGLALAGVLIGTGSSIFGIGGGSLTVPFLSWCRLKM HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHH QEAVAISSACGLPIAVAGTLGFAVAGWNEQHLPEGALGYVFLPASVGIVLTSFPFARLSA HHHHHHHHHCCCCEEHHHHHHHHEECCCCCCCCCCCCEEEEECHHHHHHHHCCCHHHHHH RLSHRLPSATLKKVFALVLFVLGLKLAFG HHHHCCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure AVLELFLICLGVGVGAGLLAGALGLGGGVVIVPALIFLFRGLGFPDDLVAKMAVATSLS HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH TIIVTSISAVRAHHKAGFVRWPVAVRLGVGIVLGAFAGAFIADAMKGELLTRLFGLFAML HHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IAVQMLLVGRKALDESLPQRVPGTPGLALAGVLIGTGSSIFGIGGGSLTVPFLSWCRLKM HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHH QEAVAISSACGLPIAVAGTLGFAVAGWNEQHLPEGALGYVFLPASVGIVLTSFPFARLSA HHHHHHHHHCCCCEEHHHHHHHHEECCCCCCCCCCCCEEEEECHHHHHHHHCCCHHHHHH RLSHRLPSATLKKVFALVLFVLGLKLAFG HHHHCCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]