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The map label for this gene is rnk [H]

Identifier: 110835187

GI number: 110835187

Start: 2654236

End: 2654637

Strand: Reverse

Name: rnk [H]

Synonym: ABO_2326

Alternate gene names: 110835187

Gene position: 2654637-2654236 (Counterclockwise)

Preceding gene: 110835190

Following gene: 110835185

Centisome position: 85.08

GC content: 60.45

Gene sequence:

>402_bases
ATGGCGCTTCCCGTCATTACCGTGTCTCGTCTGGATGTTGCCCGTTTGGAGGCGCTGCTGTCCGATGTGGATGGCGAAGT
GGCTGATGGCCTAGAGGAGGAGTTGTTGCGCGCCACGGTGGTTGAGCCAAAGGATATGCCAGCGGATGTGGTCACCATGA
ATTCGCGGATTCGTTGCCGGGAGCAGGGCCGTGGCCGGGAAATGTGCCTGACGCTGGTATATCCGCACGATACTGGGCCG
CAGCGGGTGTCGATCCTGGCGCCGGTGGGTGCAGCGTTGTTGGGGTTGTCGGTGGGCCAAAGCATTGATTGGCCGGCGCC
CAACGGCAAGGTTTTGAAGCTGGAGATTCTTGCGGTGGAGTATCAGCCAGAAGCCAATGGTGAGGACCTGGGCGGCGAAT
AA

Upstream 100 bases:

>100_bases
TCTTTTCGCCCCTTCCGCATGAGTGTCCAATCTGTGCCTGAATGATTTCGGCATTACGGACCCGTGCTCGTGTGGGGCGT
TTTACGTTAAGGAGAAAATC

Downstream 100 bases:

>100_bases
CTCGGCCCTAGCCACCAGCTCAACAGCAAGGCGGAAAGACTGAAGCTCCCGCCTTGCTGTTGCCCGGCTTAGGTGTTGTC
CAGCGCCTCGCGGGCACGGG

Product: nucleoside diphosphate kinase regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MALPVITVSRLDVARLEALLSDVDGEVADGLEEELLRATVVEPKDMPADVVTMNSRIRCREQGRGREMCLTLVYPHDTGP
QRVSILAPVGAALLGLSVGQSIDWPAPNGKVLKLEILAVEYQPEANGEDLGGE

Sequences:

>Translated_133_residues
MALPVITVSRLDVARLEALLSDVDGEVADGLEEELLRATVVEPKDMPADVVTMNSRIRCREQGRGREMCLTLVYPHDTGP
QRVSILAPVGAALLGLSVGQSIDWPAPNGKVLKLEILAVEYQPEANGEDLGGE
>Mature_132_residues
ALPVITVSRLDVARLEALLSDVDGEVADGLEEELLRATVVEPKDMPADVVTMNSRIRCREQGRGREMCLTLVYPHDTGPQ
RVSILAPVGAALLGLSVGQSIDWPAPNGKVLKLEILAVEYQPEANGEDLGGE

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=136, Percent_Identity=47.0588235294118, Blast_Score=107, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 14288; Mature: 14156

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALPVITVSRLDVARLEALLSDVDGEVADGLEEELLRATVVEPKDMPADVVTMNSRIRCR
CCCCEEEECCCCHHHHHHHHHHCCCHHHCCHHHHHHHHHCCCCCCCCCCEEEECCCEEEC
EQGRGREMCLTLVYPHDTGPQRVSILAPVGAALLGLSVGQSIDWPAPNGKVLKLEILAVE
CCCCCCEEEEEEEEECCCCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEE
YQPEANGEDLGGE
ECCCCCCCCCCCC
>Mature Secondary Structure 
ALPVITVSRLDVARLEALLSDVDGEVADGLEEELLRATVVEPKDMPADVVTMNSRIRCR
CCCEEEECCCCHHHHHHHHHHCCCHHHCCHHHHHHHHHCCCCCCCCCCEEEECCCEEEC
EQGRGREMCLTLVYPHDTGPQRVSILAPVGAALLGLSVGQSIDWPAPNGKVLKLEILAVE
CCCCCCEEEEEEEEECCCCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEE
YQPEANGEDLGGE
ECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]