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The map label for this gene is rpoE [H]

Identifier: 110835040

GI number: 110835040

Start: 2488427

End: 2489035

Strand: Direct

Name: rpoE [H]

Synonym: ABO_2179

Alternate gene names: 110835040

Gene position: 2488427-2489035 (Clockwise)

Preceding gene: 110835039

Following gene: 110835041

Centisome position: 79.75

GC content: 55.83

Gene sequence:

>609_bases
TTGGACCCAACCCTGGAAAGCCCGGAATTCATTGAACGTCTGCGCCAGGGAGACCGAGTAGCTTTTGGCCAAGTGGTTAA
AACCCATCACAACATGTTGCTGGCCACCGCACGCACCCTGTTGTCGGCTGCGGATGCAGAAGAGGCCGTACAGGATGCTT
GGATAGCCGCATACCGGGCCATCGCCAAATTCGAAGGGCGCAGCCTGCTGCGCACCTGGCTTACCCGCATTGTGATCAAC
CAAGCACGTATGATGCTGCGCAAGGGGGGGCGGGAAATCCAATTTAACCCCATCGATGAGCGGGCGCCTTTAGACCACCG
TTTTCGCGACGACGGACACTGGGACCATCCGCCACAACACTGGGACCTAAATGGGCCCGATGCCCTGCTAACCCGAGACG
AGCTGCGCCATTGCATGGAAAAAACCTTAGGGAAAATGCCAGACAATCAGCGTCTGGTATTGGAGCTGCGGGACCTGCAA
GGCATGGATTTCGACGATATCTGTAACATGCTAGACGTTAGCGCATCGAACGTTCGAGTGCTGTTACACCGTGCCCGAGC
ACGATTGTTTGAATTGGTGGACCACTTTCAGGAGACAGGCGAATGTTGA

Upstream 100 bases:

>100_bases
ATCGATGACGTGCAGCACTTGCGCCGCATTGTCATGCTCCATCAAGGCGACGACGGCGAAGATGACCCCGCCTCCCTACT
CACACCGGAGGCCTAACACC

Downstream 100 bases:

>100_bases
AATGCAAAGACGTCGTCGCAAAAGCGGATGCCCTCGTAGACGGCACCTCCCTGACCATGCGTGAGCGCATCGCGTTGCGT
ATGCACCTGCTGATGTGCCA

Product: rna polymerase sigma-e factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MDPTLESPEFIERLRQGDRVAFGQVVKTHHNMLLATARTLLSAADAEEAVQDAWIAAYRAIAKFEGRSLLRTWLTRIVIN
QARMMLRKGGREIQFNPIDERAPLDHRFRDDGHWDHPPQHWDLNGPDALLTRDELRHCMEKTLGKMPDNQRLVLELRDLQ
GMDFDDICNMLDVSASNVRVLLHRARARLFELVDHFQETGEC

Sequences:

>Translated_202_residues
MDPTLESPEFIERLRQGDRVAFGQVVKTHHNMLLATARTLLSAADAEEAVQDAWIAAYRAIAKFEGRSLLRTWLTRIVIN
QARMMLRKGGREIQFNPIDERAPLDHRFRDDGHWDHPPQHWDLNGPDALLTRDELRHCMEKTLGKMPDNQRLVLELRDLQ
GMDFDDICNMLDVSASNVRVLLHRARARLFELVDHFQETGEC
>Mature_202_residues
MDPTLESPEFIERLRQGDRVAFGQVVKTHHNMLLATARTLLSAADAEEAVQDAWIAAYRAIAKFEGRSLLRTWLTRIVIN
QARMMLRKGGREIQFNPIDERAPLDHRFRDDGHWDHPPQHWDLNGPDALLTRDELRHCMEKTLGKMPDNQRLVLELRDLQ
GMDFDDICNMLDVSASNVRVLLHRARARLFELVDHFQETGEC

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=186, Percent_Identity=29.0322580645161, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23418; Mature: 23418

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPTLESPEFIERLRQGDRVAFGQVVKTHHNMLLATARTLLSAADAEEAVQDAWIAAYRA
CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKFEGRSLLRTWLTRIVINQARMMLRKGGREIQFNPIDERAPLDHRFRDDGHWDHPPQH
HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC
WDLNGPDALLTRDELRHCMEKTLGKMPDNQRLVLELRDLQGMDFDDICNMLDVSASNVRV
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCHHHHHH
LLHRARARLFELVDHFQETGEC
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDPTLESPEFIERLRQGDRVAFGQVVKTHHNMLLATARTLLSAADAEEAVQDAWIAAYRA
CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKFEGRSLLRTWLTRIVINQARMMLRKGGREIQFNPIDERAPLDHRFRDDGHWDHPPQH
HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC
WDLNGPDALLTRDELRHCMEKTLGKMPDNQRLVLELRDLQGMDFDDICNMLDVSASNVRV
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCHHHHHH
LLHRARARLFELVDHFQETGEC
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]