Definition | Clostridium perfringens SM101 plasmid 1, complete sequence. |
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Accession | NC_008263 |
Length | 12,397 |
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The map label for this gene is bcn
Identifier: 110804003
GI number:
Start: 4894
End: 8097
Strand: Direct
Name: bcn
Synonym: CPR_A0006
Alternate gene names: NA
Gene position: NA
Preceding gene: 110804000
Following gene: 110804001
Centisome position: NA
GC content: NA
Gene sequence:
>3204_bases TTGATTTTAAAAATAAAAAGTGAGGTTTTAAAAATGATAATGAGATTTATACCAAGTGTAAATCCAGGAGATTCAGTTGG AAGTAAGCCAACGTTTCCTGTAAATGCACAAGTAAAAGGAGATTTCTTATATTTAAGAGATGCTAATGGAAATCAAATAG CAGGAAGAAGTGTAAGTGATGGAGATGAAATAACTGTTTTAAAAGTAGATCATACTAAACAGTTAGCGTTAGTACAATAT CCTGCAGGAACTATTTATAGACAAGGCTATGTAACTAATGCAACAAGTATTATAAAATACAAAAACGAATATAATTGGTT AAATGGTTCTACTCCAGAAACTGTATATGATGTAGATAAGAAAACACAAATAGGTAGTTTAGATCCAAGAGAGAAAGCAA CAATACTTTATAAAGTAGATGGAATGACTGCACTTGTATATGATACAAGTAAAGGTAAAATGACTAAATCAGGTTTAGTT CACTATGCTGGTTCGGGTGGATCTACTGGTGGCGGAGATATAAATGGTATAGCACCAGGAGGGGAAGTACCAGGAGGATT CACATATCCTAATAATGCTCAGGTTGTTGGAGATGACTTATATTTAAGAGATGCTAATGGTAATCAAATATCTGGAAGAG TTGTAAGTAATGGTGATAAGATAACAGTTTTAGATGTAGGATATACTAAGCAATTAGCTTTAGTACAATATCCTGCTGGT AGTGTTGTTAGGCAAGGATATGTTACAAATGCAACTAACTTGATTCGTTACTTTAAACAAGGAGAATGGTTAAACGGAAG TACTACAGAGCCTGTATTAGATGAGAATGGTGGTTCATTAGGATCATTAAGTCCATATGAAGCTGCAACACCATTATATA AGAAAAATGGAATGACACATGTAGTATATGATACTTCTAAAGGTCCAAATACAAAATCAGGTTATGTAAAATTTGAGGGA TTGCCAGAGTTGCCTGATACAGGTATTCAAATTCCTTCAACTTCACATTCACAAGCAACTGTTGAAGTATATGGAACAAG TGGAAAAGGAAGACCGTTAAAAGTTTATAAAATAGGAAGTGGTAGTAAAGTACTATTTGCAGGATTCGCGTTACATGGAT GGGAAGATAACTGGTCAAATGATGGACTTGCATTAGTAAATATAGCAAATTCATTAATAGAAAAGATAGGAGATTATAAA GCACAAAATGGTCTTCATGGATGGACAGTATATATAGCACCTTGTATGAACCCTGACGGAGTTGTGGTTAAAGGAACTCA TAATGGGCCAGGTAGATGTGCGGTAACTACTAGAGTTGATATGAATAGATGTTTCCCATATAAATTTTCACCACAATATA TTTCAAGAAACTATACTGGACCTAATCCATTAGGAGCACCAGAAGCTGTAGCACTTAAAAATTTAGTTGAAAGAATAAAT GTTAGTTCAAGTGAAATGGTAGTTTTAGATTTCCATGGGTGGATGAATTTCACTCAAGGTAATGCAGAGTTAGGAAGCTA TTTTGGAAATCAATTTGGGTTTGGGCATAAAAACTTATATAGCTCAGGTTTCTTTTCAAGTTGGGCAACAACTTTAAGGA ATACAAAAGCAGTTTTAATTGAGTATCCTACAAATACTTATAGCTATAATGATGTTATAAATAAAAATTATATAGGAAAA ACTTTCAATGGAATAATAAATATTCTTAAGAATAATCCTAATGGTGGAGATGTAGATAATGGTGGATCAGATTCGAGTGA AATTCCTTATAATGCAAATGGAGAAGTAATTAACGTAGAACCAACATCAGCATTAAATGTAAGAAGTGGTCCAGGAACAA CATATAGAGCAATAGGAACACTAAAGTTAGGAAATAGAGTAACTATTTTAGCTAAAACTAAACCGGCTGGAGAAACGAAG GATTGGTATAAAATAAGTTTTAATTATGGAAGTGGATATATAAGAAGTGATTTCGTTAAGCTAGACTCATCTGAGATTAA TTATAATGCTGTAGGTGAAATAATAAATGTATCATCTTTTTTGAATGTAAGAAGTGGTCCAGGTACAAATTTTGAGATGT TAGGTAAATTATATAAGGGGGATGTAGTTTTAATAGTATCAAAGAATGGAGACTGGTATAAGATTAGATATGGTACTACA TTTGGATATATTCATAAAGATTATGTATATATAAATAAGGAAAATGATAATTTTGTTGAAAAAAAGGTTCAGATTGGTGC AGTTGAAATTAATAAGGTTAAAACTATAGATGGCATAGTTTTCGCTAATATAAATCAGATGTTAAAAGGATTTTGTAATA ATAATGGTTATACCAAAGCACCATCAGGAGATATTATAGTAACAGTTCACAATTTTCATAAAAAGATGGATGTTTCTAAA ACATTACCTATTTCTAAATGTAAGTTAATAAATGGTGATTATTATTATAATTTAAATGAATTCATAAGTATTTTAGGCTA TGATGAATTTGTTCAAAATATATCTGATTATAGTGATGTTATATATAAATATGTGTATATAGGAATGGATGATGAGACAC AGTTTACAATTCATGAAGCTTTAGATGCATTAGGGTTTATACCAGTTGTAGGTGATGTTATTGATGGTGTTAATGCTATT ATGTATGCTTTGGAAAAAGATTATCTTAATGCAGCACTTAGTTTAGGAGCTATAATTCCAGTTATAGGTAGTCCATTCTT TAAAGGTGGTAAATATGGATTTAAAATAATGAGTGGATTCTCAAAAGTTGCTAATAAATCCAAGAAATTTGTCAAAAAAC TTGATATTACTGAAGGTAGGTATGTGTATAGAGCTATACATGATGCTGATTTACAAAGAATAAAAGATGGCTTAGGATTA CAGGCAAAGAATCCTAATGGAACTTGGAGTTTAGAAGAACACATAGTTAGGGGATCAAATTCAGAATCATGGAAAAATGA TAGATTTATATCAACATCGCTTGATTTAGAGATTTCAAGGATATTTAATTCTTCAAAAAATTTAGGTATAATAAAAATAG ATTTAGAAAAAGTTCCAAAGGAATTAATATATAAATCATATAAGGAATTCCCTTTATATGATATTAATGGACACAGATCT TTAGCTTATGAATTTTCAGTTTGGCAACAAGAAATAAGTATTCTTAAAGAAATTCCTAGGGATGCATTTGAATTTATAGA ATAA
Upstream 100 bases:
>100_bases TTAGAATAAAAAAGCTGATAAAAAAATCAGCTTTTTTTAATTTTCTTATTTACAAAATTAAAAAATCTCACTCTTTATAT AGTGTAAAACAAATTCAAGC
Downstream 100 bases:
>100_bases GTAAAAGGAGTAATTATGAGAAATATACGATATGTTTTAACTCCAGAGGCGTATGGTTCCAATGGTGAATTTATAGATAA AATTGGTACATTAGGAGATT
Product: bacteriocin
Products: NA
Alternate protein names: NA
Number of amino acids: NA
Protein sequence:
>1067_residues MILKIKSEVLKMIMRFIPSVNPGDSVGSKPTFPVNAQVKGDFLYLRDANGNQIAGRSVSDGDEITVLKVDHTKQLALVQY PAGTIYRQGYVTNATSIIKYKNEYNWLNGSTPETVYDVDKKTQIGSLDPREKATILYKVDGMTALVYDTSKGKMTKSGLV HYAGSGGSTGGGDINGIAPGGEVPGGFTYPNNAQVVGDDLYLRDANGNQISGRVVSNGDKITVLDVGYTKQLALVQYPAG SVVRQGYVTNATNLIRYFKQGEWLNGSTTEPVLDENGGSLGSLSPYEAATPLYKKNGMTHVVYDTSKGPNTKSGYVKFEG LPELPDTGIQIPSTSHSQATVEVYGTSGKGRPLKVYKIGSGSKVLFAGFALHGWEDNWSNDGLALVNIANSLIEKIGDYK AQNGLHGWTVYIAPCMNPDGVVVKGTHNGPGRCAVTTRVDMNRCFPYKFSPQYISRNYTGPNPLGAPEAVALKNLVERIN VSSSEMVVLDFHGWMNFTQGNAELGSYFGNQFGFGHKNLYSSGFFSSWATTLRNTKAVLIEYPTNTYSYNDVINKNYIGK TFNGIINILKNNPNGGDVDNGGSDSSEIPYNANGEVINVEPTSALNVRSGPGTTYRAIGTLKLGNRVTILAKTKPAGETK DWYKISFNYGSGYIRSDFVKLDSSEINYNAVGEIINVSSFLNVRSGPGTNFEMLGKLYKGDVVLIVSKNGDWYKIRYGTT FGYIHKDYVYINKENDNFVEKKVQIGAVEINKVKTIDGIVFANINQMLKGFCNNNGYTKAPSGDIIVTVHNFHKKMDVSK TLPISKCKLINGDYYYNLNEFISILGYDEFVQNISDYSDVIYKYVYIGMDDETQFTIHEALDALGFIPVVGDVIDGVNAI MYALEKDYLNAALSLGAIIPVIGSPFFKGGKYGFKIMSGFSKVANKSKKFVKKLDITEGRYVYRAIHDADLQRIKDGLGL QAKNPNGTWSLEEHIVRGSNSESWKNDRFISTSLDLEISRIFNSSKNLGIIKIDLEKVPKELIYKSYKEFPLYDINGHRS LAYEFSVWQQEISILKEIPRDAFEFIE
Sequences:
NA
Specific function: NA
COG id: COG3103
COG function: function code T; SH3 domain protein
Gene ontology:
Cell location: NA
Metaboloic importance: NA
Operon status: NA
Operon components: NA
Similarity: NA
Homologues:
NA
Paralogues:
NA
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: NA
Theoretical pI: NA
Prosite motif: NA
Important sites: NA
Signals:
NA
Transmembrane regions:
NA
Cys/Met content:
NA
Secondary structure: NA
PDB accession: NA
Resolution: NA
Structure class: NA
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: NA
TargetDB status: NA
Availability: NA
References: NA