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The map label for this gene is ydfH [H]

Identifier: 110678394

GI number: 110678394

Start: 1014745

End: 1015470

Strand: Reverse

Name: ydfH [H]

Synonym: RD1_1053

Alternate gene names: 110678394

Gene position: 1015470-1014745 (Counterclockwise)

Preceding gene: 110678395

Following gene: 110678393

Centisome position: 24.57

GC content: 57.16

Gene sequence:

>726_bases
ATGACGTTGGTGCTGGATGATCTGAGCAAATGGAAGCTTGACCCGCTGGTCGCGGTCAGCCCGCAACTCCGCTTGATCCT
GCGCAGCCGCATCATCCGCAATGACCTCAAACCGGCCAGCAGGTTGTCAGAACCGGAGCTTGCAAGGGAATACCACGTCA
GCAGGCAACCCGTCCGCGAAGCCTTCATCACCCTCATGAACGAAGGCCTGCTTGAGATCCGACCACAACGCGGCACTTTT
GTGAAACTCATCGATTATGATGCGGTCCTGAACGGTCGTTTCGTACGCGAAGCGGTAGAAGCCGACATCGTCAAAAGACT
GGCAGACGCGCCGCCGGAGGGGTTGGTTAAAGATCTGCGCATACAGTTGGACGCGCAAAAGGCGGTCGGTGCGCGCGACC
CTGCGAAATTCATCGAACTGGACGAAAAGTTCCACCACACCCTTGCGGATGCCGCCGGTGTTGGCAAAGCCTGGAGTATT
CTGGACGCCATCAAGACACAGATGGACCGGGTGCGGTTTCTGACCTTCGAAGAGTTTCCGGTCGCCAAGCTGATTGATCA
GCACAGCGCGATTGTCGATGCGATCCAACAGCAAGACGTGGCAGGGGCCGAGGCCGCGATGCGCACACATCTGATGGAAA
TTCTAAGCTCGCTCCCAAAGGTGCAGGCCCTTTACCCCGCGTATTTCGACGGGCCTGCACAAACAATATCCGATCCCAAG
CCTTAA

Upstream 100 bases:

>100_bases
ACGATACATCGCGAAACCTTTGCGTATTTCCACATGTCATTCTCACCCATGTTGACATGTATGGAAGTATACAAGTAGCT
TTCCCGCAAAGGGAGCGATG

Downstream 100 bases:

>100_bases
CACTGGAGGAAACATCATGAGGCTCTTTACAAAAATCAAAGGACTGGCTGCGGTGACCTGCGTTGCAGCGCTCGCGTCTT
CAGCCGCATTTGCGCAGGAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MTLVLDDLSKWKLDPLVAVSPQLRLILRSRIIRNDLKPASRLSEPELAREYHVSRQPVREAFITLMNEGLLEIRPQRGTF
VKLIDYDAVLNGRFVREAVEADIVKRLADAPPEGLVKDLRIQLDAQKAVGARDPAKFIELDEKFHHTLADAAGVGKAWSI
LDAIKTQMDRVRFLTFEEFPVAKLIDQHSAIVDAIQQQDVAGAEAAMRTHLMEILSSLPKVQALYPAYFDGPAQTISDPK
P

Sequences:

>Translated_241_residues
MTLVLDDLSKWKLDPLVAVSPQLRLILRSRIIRNDLKPASRLSEPELAREYHVSRQPVREAFITLMNEGLLEIRPQRGTF
VKLIDYDAVLNGRFVREAVEADIVKRLADAPPEGLVKDLRIQLDAQKAVGARDPAKFIELDEKFHHTLADAAGVGKAWSI
LDAIKTQMDRVRFLTFEEFPVAKLIDQHSAIVDAIQQQDVAGAEAAMRTHLMEILSSLPKVQALYPAYFDGPAQTISDPK
P
>Mature_240_residues
TLVLDDLSKWKLDPLVAVSPQLRLILRSRIIRNDLKPASRLSEPELAREYHVSRQPVREAFITLMNEGLLEIRPQRGTFV
KLIDYDAVLNGRFVREAVEADIVKRLADAPPEGLVKDLRIQLDAQKAVGARDPAKFIELDEKFHHTLADAAGVGKAWSIL
DAIKTQMDRVRFLTFEEFPVAKLIDQHSAIVDAIQQQDVAGAEAAMRTHLMEILSSLPKVQALYPAYFDGPAQTISDPKP

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=220, Percent_Identity=37.2727272727273, Blast_Score=147, Evalue=9e-37,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27038; Mature: 26906

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLVLDDLSKWKLDPLVAVSPQLRLILRSRIIRNDLKPASRLSEPELAREYHVSRQPVRE
CEEEECCHHHHCCCCCEECCHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHCHHHHHH
AFITLMNEGLLEIRPQRGTFVKLIDYDAVLNGRFVREAVEADIVKRLADAPPEGLVKDLR
HHHHHHHCCHHEECCCCCCEEEEEEHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
IQLDAQKAVGARDPAKFIELDEKFHHTLADAAGVGKAWSILDAIKTQMDRVRFLTFEEFP
HHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
VAKLIDQHSAIVDAIQQQDVAGAEAAMRTHLMEILSSLPKVQALYPAYFDGPAQTISDPK
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHCCHHCCCCHHCCCCCC
P
C
>Mature Secondary Structure 
TLVLDDLSKWKLDPLVAVSPQLRLILRSRIIRNDLKPASRLSEPELAREYHVSRQPVRE
EEEECCHHHHCCCCCEECCHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHCHHHHHH
AFITLMNEGLLEIRPQRGTFVKLIDYDAVLNGRFVREAVEADIVKRLADAPPEGLVKDLR
HHHHHHHCCHHEECCCCCCEEEEEEHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
IQLDAQKAVGARDPAKFIELDEKFHHTLADAAGVGKAWSILDAIKTQMDRVRFLTFEEFP
HHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
VAKLIDQHSAIVDAIQQQDVAGAEAAMRTHLMEILSSLPKVQALYPAYFDGPAQTISDPK
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHCCHHCCCCHHCCCCCC
P
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]