BacMap

Definition	Mesorhizobium sp. BNC1, complete genome.
Accession	NC_008254
Length	4,412,446

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The map label for this gene is ydfG [C]

Identifier: 110636094

GI number: 110636094

Start: 4072765

End: 4073508

Strand: Reverse

Name: ydfG [C]

Synonym: Meso_3769

Alternate gene names: 110636094

Gene position: 4073508-4072765 (Counterclockwise)

Preceding gene: 110636115

Following gene: 110636093

Centisome position: 92.32

GC content: 58.6

Gene sequence:

>744_bases
ATGAGATTCCTGGCAGACGAGACAGTGGTTGTAACCGGATCATCGAGCGGAATTGGCGCTTCAGTTGCCCGTGCCTTTGC
ACGGGAGGGCGCTAAGGTCGTCATTACCGGAAGACGCAAGGAACGTCTGGACGAACTTGCGCAGGAACTCACGAATGACG
GCGGACAGATCGAACCGGTTGCGGGGGATATCACCGTCCGCGAGGAGGTGGATCGTCTTTTCGAGCGCTGCAAGCAGCGC
TTCGGACCGGTTTCGATCCTGGTGAATTGCGCCGGCATTATGCTCGCCAGCCGGTTCGAGCGCGGTCAAATCGACGACTG
GGAGTACATGAACAAGCTCAATGTCATGTCGCTCTTCTACACGTCCTATCGCGCAATCGATCAGATGAAATCGAACGGAG
GCGGCAGCATCATTCATATCGGCAGCAGCGCAGCCCTTCGGCAGAGGCCGCTCACTGGCGCATATGCAGGCACCAAGGCA
GCGATCCGCGCCGCGGCGGATTCAATGCGGCAGGAAGTGATCGAGCACAAGATACGTGTCTGCACGATTATGCCGGGGGC
CGTTGCCACCGATCTTGTCAGTCACATTACCGATCCCGAGTCTCAGGCGGGTTTCGCACAGGTGCTCAAGATGGAACGGC
TTCAGGCCGAGGATATCGCAAACATCGTGACGTTCGTGGCGCGGCAGCCGGCCTATGTCAACATCAACGAGGTCGTCGTG
CGCCCCTTAGCGCAGCAACTGTGA

Upstream 100 bases:

>100_bases
GCTTTCGTTCAGGACGTTCCCTGCTGCCGCCTGCATCTACTCAGGGCATCCGAATGCTTTCGCGTTCGGGGGAAATTTCA
AGGGAAAGTGAAAGAGACTG

Downstream 100 bases:

>100_bases
GCAGGCACTTTCAGGCGGATCCAAGAAGGATCGCCACGCGGGATCGGGCCATAGTCTGCGAAGAGGTGTGGAAGAAGAAC
CAAGGGAGGAGCAGCATTGG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MRFLADETVVVTGSSSGIGASVARAFAREGAKVVITGRRKERLDELAQELTNDGGQIEPVAGDITVREEVDRLFERCKQR
FGPVSILVNCAGIMLASRFERGQIDDWEYMNKLNVMSLFYTSYRAIDQMKSNGGGSIIHIGSSAALRQRPLTGAYAGTKA
AIRAAADSMRQEVIEHKIRVCTIMPGAVATDLVSHITDPESQAGFAQVLKMERLQAEDIANIVTFVARQPAYVNINEVVV
RPLAQQL

Sequences:

>Translated_247_residues
MRFLADETVVVTGSSSGIGASVARAFAREGAKVVITGRRKERLDELAQELTNDGGQIEPVAGDITVREEVDRLFERCKQR
FGPVSILVNCAGIMLASRFERGQIDDWEYMNKLNVMSLFYTSYRAIDQMKSNGGGSIIHIGSSAALRQRPLTGAYAGTKA
AIRAAADSMRQEVIEHKIRVCTIMPGAVATDLVSHITDPESQAGFAQVLKMERLQAEDIANIVTFVARQPAYVNINEVVV
RPLAQQL
>Mature_247_residues
MRFLADETVVVTGSSSGIGASVARAFAREGAKVVITGRRKERLDELAQELTNDGGQIEPVAGDITVREEVDRLFERCKQR
FGPVSILVNCAGIMLASRFERGQIDDWEYMNKLNVMSLFYTSYRAIDQMKSNGGGSIIHIGSSAALRQRPLTGAYAGTKA
AIRAAADSMRQEVIEHKIRVCTIMPGAVATDLVSHITDPESQAGFAQVLKMERLQAEDIANIVTFVARQPAYVNINEVVV
RPLAQQL

Specific function: Unknown

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=248, Percent_Identity=33.0645161290323, Blast_Score=124, Evalue=8e-29,
Organism=Homo sapiens, GI32483357, Length=244, Percent_Identity=27.8688524590164, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI5031737, Length=249, Percent_Identity=28.9156626506024, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI4503817, Length=184, Percent_Identity=29.8913043478261, Blast_Score=89, Evalue=2e-18,
Organism=Homo sapiens, GI40254992, Length=236, Percent_Identity=27.1186440677966, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI142976729, Length=218, Percent_Identity=27.0642201834862, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI209862901, Length=203, Percent_Identity=32.0197044334975, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI19923983, Length=203, Percent_Identity=32.0197044334975, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI20149619, Length=209, Percent_Identity=31.1004784688995, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=29.3193717277487, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI15277342, Length=231, Percent_Identity=28.1385281385281, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI126723750, Length=244, Percent_Identity=24.5901639344262, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI4758504, Length=236, Percent_Identity=28.8135593220339, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI7705925, Length=227, Percent_Identity=27.7533039647577, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI4557649, Length=193, Percent_Identity=26.4248704663212, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI19923817, Length=235, Percent_Identity=24.6808510638298, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI66933014, Length=245, Percent_Identity=28.1632653061224, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI7706318, Length=197, Percent_Identity=26.3959390862944, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI4504505, Length=230, Percent_Identity=26.0869565217391, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI40807363, Length=198, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI7705855, Length=192, Percent_Identity=26.5625, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI126723191, Length=179, Percent_Identity=25.1396648044693, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI31542939, Length=218, Percent_Identity=27.9816513761468, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI1787820, Length=242, Percent_Identity=30.5785123966942, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787905, Length=229, Percent_Identity=33.1877729257642, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787335, Length=225, Percent_Identity=29.7777777777778, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI87082160, Length=241, Percent_Identity=29.8755186721992, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87082100, Length=236, Percent_Identity=30.0847457627119, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1790717, Length=198, Percent_Identity=27.2727272727273, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788459, Length=237, Percent_Identity=28.6919831223629, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786812, Length=248, Percent_Identity=27.4193548387097, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1789208, Length=239, Percent_Identity=26.7782426778243, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1789378, Length=233, Percent_Identity=29.1845493562232, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI2367175, Length=236, Percent_Identity=28.8135593220339, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787526, Length=194, Percent_Identity=26.2886597938144, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI2367365, Length=231, Percent_Identity=28.1385281385281, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17559104, Length=259, Percent_Identity=32.8185328185328, Blast_Score=110, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI17560150, Length=245, Percent_Identity=30.6122448979592, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17562904, Length=245, Percent_Identity=30.2040816326531, Blast_Score=94, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17562990, Length=250, Percent_Identity=28.8, Blast_Score=94, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17538480, Length=219, Percent_Identity=34.2465753424658, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17562910, Length=262, Percent_Identity=30.1526717557252, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17560332, Length=249, Percent_Identity=31.7269076305221, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17562908, Length=245, Percent_Identity=29.7959183673469, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17562906, Length=244, Percent_Identity=30.7377049180328, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17551412, Length=208, Percent_Identity=33.6538461538462, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17561402, Length=247, Percent_Identity=27.1255060728745, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17565030, Length=207, Percent_Identity=32.3671497584541, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17560676, Length=238, Percent_Identity=25.6302521008403, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI193204405, Length=198, Percent_Identity=32.8282828282828, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI115534694, Length=228, Percent_Identity=28.9473684210526, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17563726, Length=245, Percent_Identity=26.9387755102041, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17560220, Length=199, Percent_Identity=32.1608040201005, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17555706, Length=227, Percent_Identity=27.3127753303965, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17538486, Length=200, Percent_Identity=30.5, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71997099, Length=206, Percent_Identity=31.0679611650485, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI25147288, Length=228, Percent_Identity=28.9473684210526, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17531453, Length=243, Percent_Identity=28.3950617283951, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI71994604, Length=241, Percent_Identity=24.4813278008299, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17544670, Length=252, Percent_Identity=27.7777777777778, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17536651, Length=232, Percent_Identity=29.3103448275862, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17536025, Length=247, Percent_Identity=27.1255060728745, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17538182, Length=208, Percent_Identity=29.3269230769231, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17555612, Length=216, Percent_Identity=29.6296296296296, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17564282, Length=194, Percent_Identity=25.2577319587629, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17568967, Length=187, Percent_Identity=27.807486631016, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71994600, Length=210, Percent_Identity=24.7619047619048, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71982365, Length=207, Percent_Identity=23.6714975845411, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17508895, Length=192, Percent_Identity=25, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193210355, Length=200, Percent_Identity=27, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI72000259, Length=259, Percent_Identity=25.0965250965251, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=253, Percent_Identity=31.2252964426877, Blast_Score=100, Evalue=4e-22,
Organism=Saccharomyces cerevisiae, GI6322067, Length=196, Percent_Identity=31.6326530612245, Blast_Score=72, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6322861, Length=191, Percent_Identity=27.7486910994764, Blast_Score=69, Evalue=7e-13,
Organism=Drosophila melanogaster, GI116007236, Length=247, Percent_Identity=32.3886639676113, Blast_Score=115, Evalue=3e-26,
Organism=Drosophila melanogaster, GI281364494, Length=258, Percent_Identity=30.2325581395349, Blast_Score=100, Evalue=9e-22,
Organism=Drosophila melanogaster, GI28571387, Length=246, Percent_Identity=29.2682926829268, Blast_Score=97, Evalue=8e-21,
Organism=Drosophila melanogaster, GI28571526, Length=238, Percent_Identity=28.9915966386555, Blast_Score=94, Evalue=6e-20,
Organism=Drosophila melanogaster, GI24641232, Length=258, Percent_Identity=27.1317829457364, Blast_Score=94, Evalue=7e-20,
Organism=Drosophila melanogaster, GI24663911, Length=260, Percent_Identity=29.2307692307692, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24641388, Length=257, Percent_Identity=28.7937743190661, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI21355319, Length=248, Percent_Identity=27.0161290322581, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI21357041, Length=193, Percent_Identity=28.4974093264249, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24644339, Length=194, Percent_Identity=28.8659793814433, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI116007234, Length=256, Percent_Identity=26.5625, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24584748, Length=200, Percent_Identity=32.5, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI161076933, Length=200, Percent_Identity=32.5, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI23397609, Length=195, Percent_Identity=29.2307692307692, Blast_Score=84, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24648944, Length=248, Percent_Identity=28.2258064516129, Blast_Score=84, Evalue=7e-17,
Organism=Drosophila melanogaster, GI24640492, Length=193, Percent_Identity=26.4248704663212, Blast_Score=84, Evalue=9e-17,
Organism=Drosophila melanogaster, GI24648693, Length=255, Percent_Identity=27.4509803921569, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21355889, Length=255, Percent_Identity=27.4509803921569, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21356301, Length=192, Percent_Identity=29.1666666666667, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI116007238, Length=180, Percent_Identity=32.2222222222222, Blast_Score=81, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24640442, Length=193, Percent_Identity=30.5699481865285, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI28574402, Length=206, Percent_Identity=29.126213592233, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24584744, Length=206, Percent_Identity=29.126213592233, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24643142, Length=241, Percent_Identity=24.4813278008299, Blast_Score=77, Evalue=8e-15,
Organism=Drosophila melanogaster, GI281364892, Length=196, Percent_Identity=30.6122448979592, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI17737361, Length=201, Percent_Identity=26.3681592039801, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24639444, Length=239, Percent_Identity=29.7071129707113, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21358495, Length=200, Percent_Identity=28.5, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24649181, Length=213, Percent_Identity=25.3521126760563, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24584752, Length=188, Percent_Identity=29.7872340425532, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI21357673, Length=208, Percent_Identity=24.0384615384615, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24580925, Length=198, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27013; Mature: 27013

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFLADETVVVTGSSSGIGASVARAFAREGAKVVITGRRKERLDELAQELTNDGGQIEPV
CCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEC
AGDITVREEVDRLFERCKQRFGPVSILVNCAGIMLASRFERGQIDDWEYMNKLNVMSLFY
CCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
TSYRAIDQMKSNGGGSIIHIGSSAALRQRPLTGAYAGTKAAIRAAADSMRQEVIEHKIRV
HHHHHHHHHHCCCCCCEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
CTIMPGAVATDLVSHITDPESQAGFAQVLKMERLQAEDIANIVTFVARQPAYVNINEVVV
EEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHH
RPLAQQL
HHHHHCC
>Mature Secondary Structure
MRFLADETVVVTGSSSGIGASVARAFAREGAKVVITGRRKERLDELAQELTNDGGQIEPV
CCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEC
AGDITVREEVDRLFERCKQRFGPVSILVNCAGIMLASRFERGQIDDWEYMNKLNVMSLFY
CCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
TSYRAIDQMKSNGGGSIIHIGSSAALRQRPLTGAYAGTKAAIRAAADSMRQEVIEHKIRV
HHHHHHHHHHCCCCCCEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
CTIMPGAVATDLVSHITDPESQAGFAQVLKMERLQAEDIANIVTFVARQPAYVNINEVVV
EEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHH
RPLAQQL
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA