BacMap

Definition	Mesorhizobium sp. BNC1, complete genome.
Accession	NC_008254
Length	4,412,446

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The map label for this gene is cbpA [C]

Identifier: 110633083

GI number: 110633083

Start: 801098

End: 802006

Strand: Direct

Name: cbpA [C]

Synonym: Meso_0726

Alternate gene names: 110633083

Gene position: 801098-802006 (Clockwise)

Preceding gene: 110633082

Following gene: 110633084

Centisome position: 18.16

GC content: 64.36

Gene sequence:

>909_bases
ATGAGAGACCCTTATGAAGTGCTGGGCGTGTCGAAGAGCGCGTCGGCCAAGGACATAAAGGCGGCCTTTCGCCGTCTGGC
GAAGAAGTATCATCCCGACCAGCGGCCCGACGATCCGCAGGCAAAGGAACGTTTCGCCGAGGTCAACCAGGCCTACGAGA
TCCTGGGGGATGAGAAGAAGCGCACGGCATTTGACAATGGCGAGATCGATGCTGCGGGCAAGCCGCGCTACCAGGATTTC
GCAGAAGCTGGCGCTGACCCCTTCGCAGGGTTCCGCCGTGGCGGCGGCGGTCCGGGTCGCGCGCATTTTGAGTTCCGCAC
GAGCGGCGTTGGCGGAGATGCAGGCGATATTTTCAGCGAGATCTTCGGTCAGGCCTTCCGCGGAAACCAGGGCGCGCGAA
GCGCCCGGCCCGAGGGAATCGGCGATATCAACGTCACGCTCGACGTAAGTGTGGAGGACATCGCCACCGAAGCCAAGGTC
AACGCGGTTTTTCCGGACGGGCGGCGCATCGCGGTGAAGTTGCCGCGCTATGTGGAGGATGGCCAGACAATCCGGCTGAA
GGGACAGGGCGCGGAAACGCCTTTCGGCGAGCGGGGCGATGCGCTCGTGAAGCTGCGCCTGCGACCCCATCCGCAGTACC
GGGTGGAAGGGCGCGATCTCCACGTCGATCTCCCGGTAAGTCTGCGCGATGCGGTCCTTGGCGCCAAGGTTGCGGTCGGC
ACCCCGACCGGAAAGGTGGCGGTGACGATCCCGGCCTGGTCCAGTTCCGATCGAACGTTGCGGCTGAAAGGGCGCGGGCT
GCCGCTTAAAGCCGGCGGCAACGGCGATCTTTACACTCATGTGCGCATCATGTTGCCCGAGGGGGGCGACCCTGCGCTGG
AGGCACTGTTCCGTAAGGCAGACGCCTGA

Upstream 100 bases:

>100_bases
GAATTCCGCCAGCCGAATACGCATATAATCGTTGAATGCTGAAACTGTTGGCAAAAACATTCTTTGCGGCGCTTTCCTGC
CGCCGTTGGGCAAGGCAGAA

Downstream 100 bases:

>100_bases
CAACTTTTCCGAGCAAAACCTCACGGCAGGCTTTCCCGGTCGCGCGCTTGATGCAATTCTGCCACTGTGCGATACGGCGT
CCGCCGCAATTTGAGTTCGG

Product: heat shock protein DnaJ-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MRDPYEVLGVSKSASAKDIKAAFRRLAKKYHPDQRPDDPQAKERFAEVNQAYEILGDEKKRTAFDNGEIDAAGKPRYQDF
AEAGADPFAGFRRGGGGPGRAHFEFRTSGVGGDAGDIFSEIFGQAFRGNQGARSARPEGIGDINVTLDVSVEDIATEAKV
NAVFPDGRRIAVKLPRYVEDGQTIRLKGQGAETPFGERGDALVKLRLRPHPQYRVEGRDLHVDLPVSLRDAVLGAKVAVG
TPTGKVAVTIPAWSSSDRTLRLKGRGLPLKAGGNGDLYTHVRIMLPEGGDPALEALFRKADA

Sequences:

>Translated_302_residues
MRDPYEVLGVSKSASAKDIKAAFRRLAKKYHPDQRPDDPQAKERFAEVNQAYEILGDEKKRTAFDNGEIDAAGKPRYQDF
AEAGADPFAGFRRGGGGPGRAHFEFRTSGVGGDAGDIFSEIFGQAFRGNQGARSARPEGIGDINVTLDVSVEDIATEAKV
NAVFPDGRRIAVKLPRYVEDGQTIRLKGQGAETPFGERGDALVKLRLRPHPQYRVEGRDLHVDLPVSLRDAVLGAKVAVG
TPTGKVAVTIPAWSSSDRTLRLKGRGLPLKAGGNGDLYTHVRIMLPEGGDPALEALFRKADA
>Mature_302_residues
MRDPYEVLGVSKSASAKDIKAAFRRLAKKYHPDQRPDDPQAKERFAEVNQAYEILGDEKKRTAFDNGEIDAAGKPRYQDF
AEAGADPFAGFRRGGGGPGRAHFEFRTSGVGGDAGDIFSEIFGQAFRGNQGARSARPEGIGDINVTLDVSVEDIATEAKV
NAVFPDGRRIAVKLPRYVEDGQTIRLKGQGAETPFGERGDALVKLRLRPHPQYRVEGRDLHVDLPVSLRDAVLGAKVAVG
TPTGKVAVTIPAWSSSDRTLRLKGRGLPLKAGGNGDLYTHVRIMLPEGGDPALEALFRKADA

Specific function: DNA-Binding Protein That Preferentially Recognizes A Curved DNA Sequence. It Is Probably A Functional Analog Of Dnaj; Displays Overlapping Activities With Dnaj, But Functions Under Different Conditions, Probably Acting As A Molecular Chaperone In An Adapt

COG id: COG2214

COG function: function code O; DnaJ-class molecular chaperone

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 J domain [H]

Homologues:

Organism=Homo sapiens, GI205360838, Length=332, Percent_Identity=30.7228915662651, Blast_Score=130, Evalue=1e-30,
Organism=Homo sapiens, GI205360840, Length=332, Percent_Identity=30.7228915662651, Blast_Score=130, Evalue=1e-30,
Organism=Homo sapiens, GI6631085, Length=341, Percent_Identity=27.5659824046921, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI7706495, Length=293, Percent_Identity=30.0341296928328, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI5453690, Length=323, Percent_Identity=27.8637770897833, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI194328760, Length=339, Percent_Identity=26.5486725663717, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI194328758, Length=339, Percent_Identity=26.5486725663717, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI4504511, Length=331, Percent_Identity=25.0755287009063, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI23503241, Length=124, Percent_Identity=40.3225806451613, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI201862587, Length=354, Percent_Identity=25.9887005649718, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI56549115, Length=354, Percent_Identity=25.9887005649718, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI201862518, Length=354, Percent_Identity=25.9887005649718, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI45504382, Length=61, Percent_Identity=50.8196721311475, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI29126218, Length=61, Percent_Identity=52.4590163934426, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI56687498, Length=63, Percent_Identity=50.7936507936508, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI24308127, Length=97, Percent_Identity=39.1752577319588, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI4885495, Length=66, Percent_Identity=53.030303030303, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI47777312, Length=124, Percent_Identity=39.5161290322581, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI17388799, Length=66, Percent_Identity=53.030303030303, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI27151736, Length=125, Percent_Identity=40, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI88501736, Length=125, Percent_Identity=40, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI39204547, Length=323, Percent_Identity=25.3869969040248, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI21553335, Length=66, Percent_Identity=46.969696969697, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI1787235, Length=322, Percent_Identity=35.0931677018634, Blast_Score=147, Evalue=9e-37,
Organism=Escherichia coli, GI1786197, Length=340, Percent_Identity=27.9411764705882, Blast_Score=119, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI212645553, Length=292, Percent_Identity=29.4520547945205, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17534355, Length=334, Percent_Identity=25.748502994012, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17554644, Length=63, Percent_Identity=50.7936507936508, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17554900, Length=75, Percent_Identity=45.3333333333333, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17553096, Length=120, Percent_Identity=34.1666666666667, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI115532476, Length=63, Percent_Identity=49.2063492063492, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17553098, Length=120, Percent_Identity=34.1666666666667, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI115532378, Length=63, Percent_Identity=47.6190476190476, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI86563276, Length=124, Percent_Identity=34.6774193548387, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6324265, Length=342, Percent_Identity=26.9005847953216, Blast_Score=84, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6322194, Length=93, Percent_Identity=39.7849462365591, Blast_Score=71, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6323870, Length=71, Percent_Identity=40.8450704225352, Blast_Score=66, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6322388, Length=106, Percent_Identity=36.7924528301887, Blast_Score=63, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24658562, Length=332, Percent_Identity=30.421686746988, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24658555, Length=332, Percent_Identity=30.421686746988, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI45549272, Length=341, Percent_Identity=29.3255131964809, Blast_Score=104, Evalue=6e-23,
Organism=Drosophila melanogaster, GI45552813, Length=341, Percent_Identity=29.3255131964809, Blast_Score=104, Evalue=7e-23,
Organism=Drosophila melanogaster, GI45552811, Length=341, Percent_Identity=29.3255131964809, Blast_Score=104, Evalue=9e-23,
Organism=Drosophila melanogaster, GI19920464, Length=307, Percent_Identity=26.3843648208469, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI85726398, Length=335, Percent_Identity=26.2686567164179, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI17737735, Length=62, Percent_Identity=51.6129032258064, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI28574723, Length=62, Percent_Identity=51.6129032258064, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24668523, Length=62, Percent_Identity=51.6129032258064, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24654066, Length=74, Percent_Identity=47.2972972972973, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24654070, Length=74, Percent_Identity=47.2972972972973, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24654068, Length=74, Percent_Identity=47.2972972972973, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24654072, Length=74, Percent_Identity=47.2972972972973, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24762799, Length=92, Percent_Identity=40.2173913043478, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI161077138, Length=66, Percent_Identity=46.969696969697, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24668492, Length=65, Percent_Identity=46.1538461538462, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI21355911, Length=104, Percent_Identity=38.4615384615385, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21355073, Length=75, Percent_Identity=40, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002939
- InterPro:   IPR001623
- InterPro:   IPR018253
- InterPro:   IPR008971
- InterPro:   IPR015609
- InterPro:   IPR003095 [H]

Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]

EC number: NA

Molecular weight: Translated: 32632; Mature: 32632

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDPYEVLGVSKSASAKDIKAAFRRLAKKYHPDQRPDDPQAKERFAEVNQAYEILGDEKK
CCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHH
RTAFDNGEIDAAGKPRYQDFAEAGADPFAGFRRGGGGPGRAHFEFRTSGVGGDAGDIFSE
HCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHH
IFGQAFRGNQGARSARPEGIGDINVTLDVSVEDIATEAKVNAVFPDGRRIAVKLPRYVED
HHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHHHCCCEEEEECCCCCEEEEECCCCCCC
GQTIRLKGQGAETPFGERGDALVKLRLRPHPQYRVEGRDLHVDLPVSLRDAVLGAKVAVG
CCEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEECCCEEEEECCCHHHHHHHCCEEEEC
TPTGKVAVTIPAWSSSDRTLRLKGRGLPLKAGGNGDLYTHVRIMLPEGGDPALEALFRKA
CCCCEEEEEEECCCCCCCEEEEECCCCEEEECCCCCEEEEEEEEEECCCCHHHHHHHHHC
DA
CC
>Mature Secondary Structure
MRDPYEVLGVSKSASAKDIKAAFRRLAKKYHPDQRPDDPQAKERFAEVNQAYEILGDEKK
CCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHH
RTAFDNGEIDAAGKPRYQDFAEAGADPFAGFRRGGGGPGRAHFEFRTSGVGGDAGDIFSE
HCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHH
IFGQAFRGNQGARSARPEGIGDINVTLDVSVEDIATEAKVNAVFPDGRRIAVKLPRYVED
HHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHHHCCCEEEEECCCCCEEEEECCCCCCC
GQTIRLKGQGAETPFGERGDALVKLRLRPHPQYRVEGRDLHVDLPVSLRDAVLGAKVAVG
CCEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEECCCEEEEECCCHHHHHHHCCEEEEC
TPTGKVAVTIPAWSSSDRTLRLKGRGLPLKAGGNGDLYTHVRIMLPEGGDPALEALFRKA
CCCCEEEEEEECCCCCCCEEEEECCCCEEEECCCCCEEEEEEEEEECCCCHHHHHHHHHC
DA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]