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The map label for this gene is ydgJ [C]

Identifier: 110632811

GI number: 110632811

Start: 496345

End: 497535

Strand: Direct

Name: ydgJ [C]

Synonym: Meso_0450

Alternate gene names: 110632811

Gene position: 496345-497535 (Clockwise)

Preceding gene: 110632810

Following gene: 110632812

Centisome position: 11.25

GC content: 64.15

Gene sequence:

>1191_bases
ATGGTTTCCGCATCCGCGACGACATTGGCCGCTCGGCCGGTCCGCCTGGGCATGGTGGGAGGAGGGCAGGGCGCGTTCAT
CGGCGCCGTTCACCGCATGGCGGCCCGCCTTGACGGACATTTTATTCTTCTCGCCGGCGCGCTTTCCTCCGATCCTGAGC
GCGCCAGGACATCAGGTGCCGATCTCGGGCTAGAGCCCGATCGCTGCTACGGCAGTTTCCAGGAGATGGCAGAAAAGGAG
GCTGCGCGGCCGGACGGCATCGAGGCGGTGAGCATCGTTACGCCCAACCACATGCATTATCCGGCGGCGAAGGCCTTTCT
GGAAGCCGGCATTCACGTCATTTGCGACAAGCCTCTGACGTCCAGCCTGGAGGATGCCAAGGCCCTGGCCGAGACGGTGA
AGAGAAGCGGAAAGCTCTTCGTGCTCACCCATAATTACTCCGGGTATCCCATGATCCGTCAGGCGCGGCAGATGGTCGGG
GATGGTGCGCTGGGCGAAATCATTCTTGTCCAGGCGGAATATCCGCAGGACTGGCTCGCAGAGCCGGTCGAGCAGAGCGG
CAACAAGCAGGCATCCTGGCGCACGGATCCCAGCCGCTCGGGGGTGGGCGGAGCAATCGGCGATATCGGAACCCACGCAT
ATCAACTCGTCACCTTCGTCACGGGTTTGCACGCCGAGAGCCTGGCCGCCGATCTCGATCGTTTCGTGCCGGGCCGGCAG
CTCGATGACAACGCGCATATCATGCTGCGTTTCGGCGAGCGCGGCGGGCGGCGCGCCAAGGGTATGATCTGGGCCAGCCA
GGTGGCACCGGGTAACGAAAACGGGCTGAAGCTGAGGGTCTATGGAACCAGGGGCGGATTGGAATGGGTGCAGGCCGATC
CGAATTATCTCTGGTTCACCCCGCTTGGCGAGCCGAAAAGGCTGCTGACGCGCGGCGGCGCGGGCGCGGGTCCGGCGGCG
GCCGCGGTCACGCGCATTCCGGGCGGCCATCCAGAAGGTTATCTGGAGGCGTTCGCAACGCTCTATACGGAAGCGGCAAA
AGCCATTCGCGCGGTTCAGAGCGGCGGGCCGCCTCCTGAAGATCTGGTGCTTCCAACGGTCGAGGATGGCCTGGAGGGGA
TGCGCTTCATTCAGGCCTGCGTGAATTCCTCGCACAAGGATGCCGCCTGGACCCGCCTGGATACGCTTTGA

Upstream 100 bases:

>100_bases
CCGCGTTACCGAAAAGGCGTTTGACGATTTCGCCGCTGGTACCAGCGACCGGTCGAGTCTTCGCGCCATGCTCGGTATCG
TTTGAAGCAAGGGGAAAGAC

Downstream 100 bases:

>100_bases
AGCCGGTAGCCAGCCTCTCGTGAGTGAGCCAAATGCCATGCACGACGGCTTTGCAGCTTTGCATTTTTAGGAATTGACGA
TAGGTGCCTTCTTGCCGAAG

Product: oxidoreductase-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MVSASATTLAARPVRLGMVGGGQGAFIGAVHRMAARLDGHFILLAGALSSDPERARTSGADLGLEPDRCYGSFQEMAEKE
AARPDGIEAVSIVTPNHMHYPAAKAFLEAGIHVICDKPLTSSLEDAKALAETVKRSGKLFVLTHNYSGYPMIRQARQMVG
DGALGEIILVQAEYPQDWLAEPVEQSGNKQASWRTDPSRSGVGGAIGDIGTHAYQLVTFVTGLHAESLAADLDRFVPGRQ
LDDNAHIMLRFGERGGRRAKGMIWASQVAPGNENGLKLRVYGTRGGLEWVQADPNYLWFTPLGEPKRLLTRGGAGAGPAA
AAVTRIPGGHPEGYLEAFATLYTEAAKAIRAVQSGGPPPEDLVLPTVEDGLEGMRFIQACVNSSHKDAAWTRLDTL

Sequences:

>Translated_396_residues
MVSASATTLAARPVRLGMVGGGQGAFIGAVHRMAARLDGHFILLAGALSSDPERARTSGADLGLEPDRCYGSFQEMAEKE
AARPDGIEAVSIVTPNHMHYPAAKAFLEAGIHVICDKPLTSSLEDAKALAETVKRSGKLFVLTHNYSGYPMIRQARQMVG
DGALGEIILVQAEYPQDWLAEPVEQSGNKQASWRTDPSRSGVGGAIGDIGTHAYQLVTFVTGLHAESLAADLDRFVPGRQ
LDDNAHIMLRFGERGGRRAKGMIWASQVAPGNENGLKLRVYGTRGGLEWVQADPNYLWFTPLGEPKRLLTRGGAGAGPAA
AAVTRIPGGHPEGYLEAFATLYTEAAKAIRAVQSGGPPPEDLVLPTVEDGLEGMRFIQACVNSSHKDAAWTRLDTL
>Mature_396_residues
MVSASATTLAARPVRLGMVGGGQGAFIGAVHRMAARLDGHFILLAGALSSDPERARTSGADLGLEPDRCYGSFQEMAEKE
AARPDGIEAVSIVTPNHMHYPAAKAFLEAGIHVICDKPLTSSLEDAKALAETVKRSGKLFVLTHNYSGYPMIRQARQMVG
DGALGEIILVQAEYPQDWLAEPVEQSGNKQASWRTDPSRSGVGGAIGDIGTHAYQLVTFVTGLHAESLAADLDRFVPGRQ
LDDNAHIMLRFGERGGRRAKGMIWASQVAPGNENGLKLRVYGTRGGLEWVQADPNYLWFTPLGEPKRLLTRGGAGAGPAA
AAVTRIPGGHPEGYLEAFATLYTEAAKAIRAVQSGGPPPEDLVLPTVEDGLEGMRFIQACVNSSHKDAAWTRLDTL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87081947, Length=211, Percent_Identity=28.9099526066351, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787574, Length=217, Percent_Identity=24.8847926267281, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 42201; Mature: 42201

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSASATTLAARPVRLGMVGGGQGAFIGAVHRMAARLDGHFILLAGALSSDPERARTSGA
CCCCCCHHHEECCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCC
DLGLEPDRCYGSFQEMAEKEAARPDGIEAVSIVTPNHMHYPAAKAFLEAGIHVICDKPLT
CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCEEEECCCCC
SSLEDAKALAETVKRSGKLFVLTHNYSGYPMIRQARQMVGDGALGEIILVQAEYPQDWLA
CCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEEECCCHHHHH
EPVEQSGNKQASWRTDPSRSGVGGAIGDIGTHAYQLVTFVTGLHAESLAADLDRFVPGRQ
HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC
LDDNAHIMLRFGERGGRRAKGMIWASQVAPGNENGLKLRVYGTRGGLEWVQADPNYLWFT
CCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCEEEECCCCEEEEE
PLGEPKRLLTRGGAGAGPAAAAVTRIPGGHPEGYLEAFATLYTEAAKAIRAVQSGGPPPE
CCCCHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DLVLPTVEDGLEGMRFIQACVNSSHKDAAWTRLDTL
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCC
>Mature Secondary Structure
MVSASATTLAARPVRLGMVGGGQGAFIGAVHRMAARLDGHFILLAGALSSDPERARTSGA
CCCCCCHHHEECCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCC
DLGLEPDRCYGSFQEMAEKEAARPDGIEAVSIVTPNHMHYPAAKAFLEAGIHVICDKPLT
CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCEEEECCCCC
SSLEDAKALAETVKRSGKLFVLTHNYSGYPMIRQARQMVGDGALGEIILVQAEYPQDWLA
CCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEEECCCHHHHH
EPVEQSGNKQASWRTDPSRSGVGGAIGDIGTHAYQLVTFVTGLHAESLAADLDRFVPGRQ
HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC
LDDNAHIMLRFGERGGRRAKGMIWASQVAPGNENGLKLRVYGTRGGLEWVQADPNYLWFT
CCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCEEEECCCCEEEEE
PLGEPKRLLTRGGAGAGPAAAAVTRIPGGHPEGYLEAFATLYTEAAKAIRAVQSGGPPPE
CCCCHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DLVLPTVEDGLEGMRFIQACVNSSHKDAAWTRLDTL
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]